Cla97C08G150470 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G150470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	S4 RNA-binding domain-containing protein
Location	Cla97Chr08: 18914922 .. 18920910 (+)
RNA-Seq Expression	Cla97C08G150470
Synteny	Cla97C08G150470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATTAGCATCTACTTCATTCTCATTTCTCTCAAAACCTTCGTTTATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCCAATTCCGCTCCCAACGCCTCCTCTTCGTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCCAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAACACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGCAACCTCAAGCTCCAATCTCATCCTCCTACTCGGTTCCTTCATTCCATGTCGGAGGATGAAACTAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGGTTTGTGCTTCTCTAACTAAAATGATAATTCTGGCTTATAGTAGCTCGGCATGTCTTGTTACACAGCATTCTTTTGCGATTGTTATATGCTCTTTACTTGTTGGTCTTTGTTATGTGCTCGTTACCTGTTAGTTATTTCCACAACGGGTTTTGGCAATAGGACGGGGAAGCATCCACTTGTAGTTTAGTTAGTATTAGAATTTGTAAGTATGGTTGTGCAAATCGATGCTAAAGGTGATTTTAGTTGGCATGAACTTCAAGTTATTTATTACATGTGGATAGAATGGAGAGGTTGAACAATCTGAGTGGTTTCTACTCCAGTGTTATGTGTTACACGAGCTTAAATATAGCCTCCATCAACAACTATACTTCAAGGAAAAAGAATCAAAACAGCACAACGGACCCAGATTAACAAAGGCTCTAATCAATTGAGTAGAGGAAAAGTTGATAGGAGCTCAAGCTCTTCCATCTCGCAGCCTTATTTTATTCTTGTTCCAGCCACTTCTTCTTATTTGCGGCCTTTTTTTTTCCTCACTGTCTATGCGTACTTTCTAATTTTGCTGTTTGGTAGTCTTTGCTCTGTTATTTGCTGTTTGTTTGGTTTAAGGGAAATTCTTCTCTTTGAGCTCCATTCTTCTCGTAAAACCACGAATGGAAGACTATGTAAATTGACATGTACTGTAAGGGGTAGAGATATCTTGTGGAGGTCTGGACTACAACTTGGTTAAATGCCATTTGCTATCCTTTGGGCACTTGTTTCCAAAGAGTTGTTTCTATGTATCCTCAATCCATTCTCCCCAACAACTGGATCCTTTTTTACGTAGGCACTTAAGTCGGAATCTTTCCATAGAATACCATGTTGTTACTAGCTTGCCTCAACCCCTGTTAGGAGGAGGGCTGCGGATGAAAGTTCAGTTGTAGACAATTTGGTCAAGCTTTTAAGGATAAATTCTAACTGTTAATTTCTATGATCTAAAAGTTAAACTTCTAAAGCAATCTACTTGATCCTTCTTTTGTGTTCTATTGTTTAGCATTGGTCATGGAGTGTTCTGTTTTGTCTTCTTCTGCAGTGTCCTGTTTACATTAATTACCATTGCCCCCATAAGATCTCATAGTAGGTATTGTACTCCTCTTTTTTCTGTCAGTGGCATCAAGACGGAGCAGTGAAGAGCTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTCTGCAATACTCCTCAGGTTAGTTTTCATGTCATTTGGGTCAGATAGATTTTGTTTTAACTATGAATGAATAAATGATTTCACCTTTCTGCAGACTCGGGTAGATCCTGCAAGAGATGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACAAAAAGTTTATCTAGCTCTAAACAAGCCAAAAGGGTAGGTCACTTATTCTCTAAGATCAATTTCCCTTTCTTACCCCAAGCTTCTCTTGGGAATTTGGCTTTTATGTGCTTCTGTTGCTAATCTTATAAAATGCCACGGCAGGTATATTTGTTCATCTGGGAAAAAGGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGGGTTGGGTATGTCAAACTCAAACCTACTAATCATACCGTTTTCAAGCAAAAGATTAGAAAGTACTGATAATCTTATGATCATTTTGATACATGAAACATTGTTTGCAAGTTATTGAACTAAAACTTTGCATTTGCAGGATAAAACACATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACCACTGGGTTGATTATAGTGACAAATGATGGTATGCTATACAAACTTCTCTTGGTTGCCTCCGTATTTAGGATTGCTGTAAAAAAAGGTTTGGAGTTAAAAGAATAGATCTTGGACCATTTGCAAAATTACCATTGACTTTCCTTTTCAGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAGTAAGTGATCTAAATTTATTTCCTTACTCTTGCTGATGCATTGTAAAGTTACCTACAAAAGTAACTTTTGGCATTATTTTCATGGAATAATTTAGAGATCAACAGATTTATAAAAATCTGTTGAGACCATAAACATCAGAACAGGAATGATTGTGGGCTATGGCCTATAAATCTGTGGCGTATTTATTGAATGAAAATTGATGGAACCTTTACCTACTGACCGTTTCAGGGATGAGAAATATTGTGCTGATCTTCTTTTTTAGTTCTTTTTTCCCTATAAAAATTTGAATTAGAGCATTTTCATTTTTATATTGTGCTTCCTAGGACATATAGCTTTTAAAGTTTTGAATGTTGGATATCTGAAAAATGAAAATGCAACATTTGCCCTTTATAATTGTAGATACATTGCAGCAGTAGATGGTGCTGTTAGTAAGCAGAACCTGATAACAATCAGTGAAGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTAGAGTTACTACCACGACAGCCAGATATATCAAGACCTCGTCTGCGTATCGTGGTGCTTTATCCATCCATATTATAGTTTTAAAATATCTATCTGCTTTCAGCGCTTTCATTACTTCTTGTTTGATCTAATTGGTCATGAAGTAATGATTGTATAGACCAACAAAATCTGTTGCTTTGTACCTTGAGTGTTGTTGGTCTGAGTTTTACTCTATTATTGTTGATGCTATACAGCAGTCGGTGGAGGAAAATGTATTAATACCTTTTTTCTGCATGCAGCGCTCCCGACTAACTTACTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTAGAGGTTAGCATCTGACCTTCTTTAAGACACTTGCCCATTACTTTGATACTTTCCCGCCATAGCCATATAAGATACAAATTAAGTAGTACTATTTCAGGAGGAGGAGGATAATTACAAAAAAAAAAAGAAAAAACAAAGCTCCTACCTAGGATTTAATATCCTATGGATTTTCTTAACACTCAAATGTTGTAGGGTCAGGTGAGTTGTCTTGTGAGATTAGAGTTGTGCGTAAACTGGCCCGGACACTCATGGATAGAGAAAAAAAAAGAGAAAGAAATTGGATAGTTAGAAAAGAATTTTTGGTTGCTATGGCACCACCAAGGAGCAAGGAGCTGTATTTAACTCAAAAAATGCTATAACTAGAGGACTTATCTTCAAAAACCCTGTTGTTTCTTTCCAGCCAACACCTCTACATGAGTGCTCTTGAAGCAAAACCCCAAAGGACTTTGGTCTCGCGCCTTTCACAGTACATTAACAAAAAATTCATAAGTCTGAAATGTCTGATGGTGCTCGAATTATTTTTCCCATTTTGGGGAGGAATGAAGTACGCTGTGGCTGGATGGGACTCTAGGTTTTGCCTGGGAAATTTGGCTATAATATAACAGGAAGGTTTTTGGGCACAAGGCTATGGAGAAATTGGAGCTGGGAAGTCTTCTGAACTTCAATACCTTCATTTGGGCTTCTCTTACTAGGGACTCTCAAGATTATCCTTCACATTTATGATTATTGAGAATTTAGATTTGGGTTTCGTTAAATACTTGAGCCCATCGGTACATTTTCAAACAACTCACTATTGCATGATATATACCACCTGATTTGGAAGGGTCATTACCCTAAGAAGATAAAGTTTTTTATACGGTAGCTCTCTAAAAAAGCCATCAACACACGACAAGCTTCAAAGAAGAATGCCTTACATGGCTTTGTCGCCTCATTGGTGCTCTGTTTGGAAACGACAATCAGAGTCCCAGAGCACCTTATAGTATTTTGTAAGTTTAGGGTTTAGGGTCTTTTCAACTTTTTAATTGGCACACGGCTCGTCTGAAAGACCCTGGAACTCTCCTAAGTCCTATTCCATGTCCTTGGAGGCCACCCTTTCCAAAATGAAAGAAGCTTCTTCGAGAGAATTTTATTAGAGCATTCTACTGGAACATTTGGCAAGAAAGGAATAGAAGAATCTTCCATGAAAAGGAACTCTTTTATTATAGATTTTTTGATGGTATAGTTAATACTCTTGTGATTTGGTGTAAATGCTCTCCCTTATTCCATCACTATTGTTTTTCTAATCTCCTTTCAAATTGGAAATGTCTTTTGTAATCTCTCTACTGGACTTCCTCTTCTTTTGTATTCTCGTACCATCAATAAAATCGTTTCTTATACAAAAAAAAGACGCTTCATTTTCTTTTTGGAGGGCATTGTTGTATCTTTTTGTTCTCGTTGGTACTCTATATTGTAGGCCTTTATTTTTTACGACTATATTTCTTCATGGAAGATTTTTTTTAACCTATAAATATAAACCTGTATTTACCTACCTGTTGTGAGTTTTTTTTTTTCCCATTCATTCATGATAGCCACATTAAATACTCGAACATGAGGAAACTGGGCATATGGCATCAAGGGCTACCTTCGTAGTGCCTTTTCAACTACTTGTCCTATTGTTGGAGTTTGTCTGCTAGTTCCATTTGCATGTGTAATTTCTGGAATTTATTGAAACAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCATCAGATTTGGGGTAATTTCTTGTTATGATCACCTTTGATCTGTTTCTTTGTTGAACTCGTAATTATTTGGGATGGGCACAGAATCAGATTAGATGATCCATTTGCAATTCATTTTCACATAACAGAAACCAAGAAATAAAGGTAAATAATTTCTTATTATTTTGCATGCAAGTATTCGGAAATGTTGGTGAATAGTACGTGTCAGTATATTATAATTATAATTAATTAGATGTCAGAAAACTAACCAAATATAAATGTATCTTTCAATTGAACAACGAAGATCTTAAAAGTTTATTCTTGAAGATAAATTGAAATAAAACAATTTTAATCTTGAAAATAAAATTTATCACAAACGATAATCAGGTGGATAAGATTCATTTTGTCTGTCCTCAAATCTATCTCCAACAATTCCCTTTTTAACTTCGGGCAGAACCCTCGAGATTGTGCAACAAACTTCCCTCTTCCTTTTTTTTCTTCTTTTCTTTTCTCTTTCCTTTTTTTTTTACAGTTTTCGAGGTGAACCTTGAAAATGCTTCGAAGTTTTAGCTGCAACTTATTTATGAATATGAGAATTTAAATGAATGTGATGCCATGTAGATTTATTGAATTGAAAAAATTGCCGCATTATTTCAGGCTGGGAAGTTACACTGAACTAAAACAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTGAGTTTCTGATGGCTACGGAGTCGTCCATAGTCGTTGAAGCTTGAATGTGGTAGGAGTGATTTCAGACATACCACATGCATGGAAGCACCGCTCTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATGATGCTTGGGTTGAAGATTTCAGTCAACATTGA

mRNA sequence

ATGGTTTCATTAGCATCTACTTCATTCTCATTTCTCTCAAAACCTTCGTTTATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCCAATTCCGCTCCCAACGCCTCCTCTTCGTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCCAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAACACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGCAACCTCAAGCTCCAATCTCATCCTCCTACTCGGTTCCTTCATTCCATGTCGGAGGATGAAACTAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGCAGTGAAGAGCTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTCTGCAATACTCCTCAGACTCGGGTAGATCCTGCAAGAGATGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACAAAAAGTTTATCTAGCTCTAAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAGGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGGGTTGGGATAAAACACATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACCACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAATACATTGCAGCAGTAGATGGTGCTGTTAGTAAGCAGAACCTGATAACAATCAGTGAAGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTAGAGTTACTACCACGACAGCCAGATATATCAAGACCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCATCAGATTTGGGGCTGGGAAGTTACACTGAACTAAAACAAAGAGTGATTTCAGACATACCACATGCATGGAAGCACCGCTCTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATGATGCTTGGGTTGAAGATTTCAGTCAACATTGA

Coding sequence (CDS)

ATGGTTTCATTAGCATCTACTTCATTCTCATTTCTCTCAAAACCTTCGTTTATCCTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCGCTCTCCTCCAATTCCGCTCCCAACGCCTCCTCTTCGTCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCCAAACCGAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAACACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGCAACCTCAAGCTCCAATCTCATCCTCCTACTCGGTTCCTTCATTCCATGTCGGAGGATGAAACTAAGCCCAAGAAGAAGAAGGTTTCTGCTGATAAACGCCCAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGATTTTACAATGAGAACATTAGAGACTCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGCAGTGAAGAGCTTATTTTTGAAGGTCGCGTGACTGTTAATGGTTCTGTCTGCAATACTCCTCAGACTCGGGTAGATCCTGCAAGAGATGTTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACAAAAAGTTTATCTAGCTCTAAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAGGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGGGTTGGGATAAAACACATCCAGGACAACCCAAACCACGGCTGTTTACAGTTGGCAGACTTGATGTTGCAACCACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCAAAGGAATACATTGCAGCAGTAGATGGTGCTGTTAGTAAGCAGAACCTGATAACAATCAGTGAAGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTAGAGTTACTACCACGACAGCCAGATATATCAAGACCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTCGGGAACTTGTAAAAGCTGCTGGTCTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCATCAGATTTGGGGCTGGGAAGTTACACTGAACTAAAACAAAGAGTGATTTCAGACATACCACATGCATGGAAGCACCGCTCTACTTCTCTAACTGCTGGGACAGTATATGAACATTTGAAGAGGTTGGATACTGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATGATGCTTGGGTTGAAGATTTCAGTCAACATTGA

Protein sequence

MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVSADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWKHRSTSLTAGTVYEHLKRLDTVYSSSRFTPWPLIIYNDAWVEDFSQH

Homology

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BLAST of Cla97C08G150470 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 746.9 bits (1927), Expect = 1.0e-211
Identity = 380/399 (95.24%), Postives = 387/399 (96.99%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLAS+S SFLSKPSFILNPIRAIPRISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKSEVE PFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           ADKRPTEPPKHSKAARRFYNENIRD+SQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K WDKT+PGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQSISHPSSGLSKEYIAA+DGAV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGTIIDG+HCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGGFRLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAI--GWK 397

[Close]

BLAST of Cla97C08G150470 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 716.8 bits (1849), Expect = 1.1e-202
Identity = 367/399 (91.98%), Postives = 376/399 (94.24%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLAS+S   LSKPS I NPIRAIPRISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKSEVEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAA+DG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGTIIDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGGFRLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAI--GWK 397

[Close]

BLAST of Cla97C08G150470 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 712.6 bits (1838), Expect = 2.1e-201
Identity = 367/399 (91.98%), Postives = 375/399 (93.98%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLAS+S SFLSKPS I N IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAA+DG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGG+RLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAI--GWK 395

[Close]

BLAST of Cla97C08G150470 vs. NCBI nr
Match: XP_022956132.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita moschata] >XP_023515775.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6602297.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 697.6 bits (1799), Expect = 7.0e-197
Identity = 356/399 (89.22%), Postives = 371/399 (92.98%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA++S S LSKPS ILNPIRAI RISCSLSSNSAPN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K W KT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAA+DGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAI--GWK 397

[Close]

BLAST of Cla97C08G150470 vs. NCBI nr
Match: XP_022133495.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Momordica charantia])

HSP 1 Score: 696.8 bits (1797), Expect = 1.2e-196
Identity = 363/402 (90.30%), Postives = 374/402 (93.03%), Query Frame = 0


Query: 1   MVSLAS--TSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPK 60
           M SLA+  +S S LSKPSFILNPIRAIPRISCSLSSNSAPNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKK 120
           PKPKSE++ PFQFID NTGGQL IPWIVRGEDGNL+LQSHPPTRFL SMSE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSADKR-PTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180
            SADKR P  PPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARDVIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVD 300
           DYLK WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAA+D
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GAVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAA 360
           GAVSKQNLI ISEGTIIDGVHCTPDSVELLPRQPD+SR RLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAI--GWK 398

[Close]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.8e-137
Identity = 265/420 (63.10%), Postives = 308/420 (73.33%), Query Frame = 0


Query: 3   SLASTSFSFLSKPSFILNP-IRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPKP 62
           S  S + SFL   +F L+P    I  + CS+        SSSSS  +EF+I+FAPPKPKP
Sbjct: 8   SSISFAASFLKIKAFPLSPRFFPIRTLRCSV--------SSSSSEPIEFDISFAPPKPKP 67

Query: 63  KSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDET--KPKKKKV 122
            S            T  QLFIPWIVR +DG LKLQS PP R +H+++ D T   PKKK  
Sbjct: 68  SSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDK 127

Query: 123 SADKRPTE-------------------PPKHSKAARRFYNENIRDSSQRLSKVLAAAGVA 182
           S  K+P                      PK SKAARRFYNEN ++  QRLSKVLAAAGVA
Sbjct: 128 SKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVA 187

Query: 183 SRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGY 242
           SRR+SEELIF+G+VTVNG +CNTPQTRVDP+RD+IYVNGNR+PKKLP KVY ALNKPKGY
Sbjct: 188 SRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGY 247

Query: 243 ICSSGKKESKSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQS 302
           ICSSG+KE KS ISLFD+YL  WDK +PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ 
Sbjct: 248 ICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQK 307

Query: 303 ISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRI 362
           +SHPSS L KEYI  V G + K++L+ ISEGT+++GVHC PDSVEL+P+Q DI R RLRI
Sbjct: 308 LSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRI 367

Query: 363 VVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWKH 401
           VVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQ  +  +   WK+
Sbjct: 368 VVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAL--GWKN 410

[Close]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-33
Identity = 90/248 (36.29%), Postives = 135/248 (54.44%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           R++K L+ AGVASRR +E+LI EGRV VNG V  +   +V+P  D++ V+G   P K  +
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A V+G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTEL 388
           +  + +     L I  HEGR H V+  + A G ++  LKR+ IG  +L   L  G + EL
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWREL 235

Query: 389 KQRVISDI 395
            Q  ++ +
Sbjct: 245 NQGELAQL 235

[Close]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-30
Identity = 89/227 (39.21%), Postives = 124/227 (54.63%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           RL K+L+ AG+ASRR++E+LI EGRV V+G +     TRVDP   V+ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++G           +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A V GAV +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRL 375
              P   +  +R+ +HEGR   VR L+ AAG  +  L R  IG   L
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL 231

[Close]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 2.4e-30
Identity = 80/219 (36.53%), Postives = 122/219 (55.71%), Query Frame = 0


Query: 148 QRLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLP 207
           +RL KV+A AGVASRR +EELI EG+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 QKVYLALNKPKGYICSSGKKESKSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K   +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A V G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKR 367
                     +++ +HEGRN +VR + +A G E+  LKR
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKR 206

[Close]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot
Match: P9WHQ0 (Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1751.1 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-30
Identity = 87/227 (38.33%), Postives = 124/227 (54.63%), Query Frame = 0


Query: 149 RLSKVLAAAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQ 208
           RL KVL+ AG+ASRR++E++I +GRV V+G V     TRVDP   V+ V+G R+      
Sbjct: 15  RLQKVLSQAGIASRRAAEKMIVDGRVEVDGHVVTELGTRVDPQVAVVRVDGARVVLD-DS 74

Query: 209 KVYLALNKPKGYICSSGKKESKSVI-SLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G   +      +  I  L +  ++G  K         LF VGRLD  T G
Sbjct: 75  LVYLALNKPRGMHSTMSDDRGRPCIGDLIERKVRGTKK---------LFHVGRLDADTEG 134

Query: 269 LIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELL 328
           L+++TNDG+ A  + HPS  + K Y+A V G+V +    T+  G  +D      D   ++
Sbjct: 135 LMLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIELDDGPAFVDDFAVV 194

Query: 329 PRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRL 375
              P   +  +R+ +HEGRN  VR L+ AAG  + +L R  IG   L
Sbjct: 195 DAIP--GKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVSL 229

[Close]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 712.6 bits (1838), Expect = 1.0e-201
Identity = 367/399 (91.98%), Postives = 375/399 (93.98%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLAS+S SFLSKPS I N IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAA+DG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGG+RLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAI--GWK 395

[Close]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 697.6 bits (1799), Expect = 3.4e-197
Identity = 356/399 (89.22%), Postives = 371/399 (92.98%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA++S S LSKPS ILNPIRAI RISCSLSSNSAPN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K W KT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAA+DGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAI--GWK 397

[Close]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 696.8 bits (1797), Expect = 5.8e-197
Identity = 363/402 (90.30%), Postives = 374/402 (93.03%), Query Frame = 0


Query: 1   MVSLAS--TSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPK 60
           M SLA+  +S S LSKPSFILNPIRAIPRISCSLSSNSAPNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKK 120
           PKPKSE++ PFQFID NTGGQL IPWIVRGEDGNL+LQSHPPTRFL SMSE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSADKR-PTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180
            SADKR P  PPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARDVIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVD 300
           DYLK WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAA+D
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GAVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAA 360
           GAVSKQNLI ISEGTIIDGVHCTPDSVELLPRQPD+SR RLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQ  +  I   WK
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAI--GWK 398

[Close]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 9.9e-197
Identity = 355/399 (88.97%), Postives = 371/399 (92.98%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA++S S LSKPS ILNPIRAI RISCSLSSNSAPN SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
            DKR  EPPK+SKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K W KT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAA+DGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLITISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWK 400
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ  +  I   WK
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQCDLKAI--GWK 397

[Close]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 693.0 bits (1787), Expect = 8.4e-196
Identity = 355/379 (93.67%), Postives = 362/379 (95.51%), Query Frame = 0


Query: 1   MVSLASTSFSFLSKPSFILNPIRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPK 60
           MVSLAS+S SFLSKPS I N IRAIPRISCSLSSNS PNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 ADKRPTEPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAVDGAV 300
           K WDKT+PGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAA+DG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]

BLAST of Cla97C08G150470 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 489.6 bits (1259), Expect = 2.7e-138
Identity = 265/420 (63.10%), Postives = 308/420 (73.33%), Query Frame = 0


Query: 3   SLASTSFSFLSKPSFILNP-IRAIPRISCSLSSNSAPNASSSSSSSLEFNITFAPPKPKP 62
           S  S + SFL   +F L+P    I  + CS+        SSSSS  +EF+I+FAPPKPKP
Sbjct: 8   SSISFAASFLKIKAFPLSPRFFPIRTLRCSV--------SSSSSEPIEFDISFAPPKPKP 67

Query: 63  KSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDET--KPKKKKV 122
            S            T  QLFIPWIVR +DG LKLQS PP R +H+++ D T   PKKK  
Sbjct: 68  SSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDK 127

Query: 123 SADKRPTE-------------------PPKHSKAARRFYNENIRDSSQRLSKVLAAAGVA 182
           S  K+P                      PK SKAARRFYNEN ++  QRLSKVLAAAGVA
Sbjct: 128 SKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVA 187

Query: 183 SRRSSEELIFEGRVTVNGSVCNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGY 242
           SRR+SEELIF+G+VTVNG +CNTPQTRVDP+RD+IYVNGNR+PKKLP KVY ALNKPKGY
Sbjct: 188 SRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGY 247

Query: 243 ICSSGKKESKSVISLFDDYLKGWDKTHPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQS 302
           ICSSG+KE KS ISLFD+YL  WDK +PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ 
Sbjct: 248 ICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQK 307

Query: 303 ISHPSSGLSKEYIAAVDGAVSKQNLITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRI 362
           +SHPSS L KEYI  V G + K++L+ ISEGT+++GVHC PDSVEL+P+Q DI R RLRI
Sbjct: 308 LSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRI 367

Query: 363 VVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQRVISDIPHAWKH 401
           VVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQ  +  +   WK+
Sbjct: 368 VVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAL--GWKN 410

[Close]

BLAST of Cla97C08G150470 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 115.9 bits (289), Expect = 8.1e-26
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 306 ITISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLK 365
           + ISEGT+++G+HC PD VEL+P+Q DI R  LRIVVHEGRNHEVRELVK  GLE+ SLK
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60

Query: 366 RVRIGGFRLPSDLG 380
           RVRIGG RLPSDLG
Sbjct: 61  RVRIGGVRLPSDLG 74

The following BLAST results are available for this feature:

BLAST of Cla97C08G150470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884576.1	1.0e-211	95.24	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben...	[more]
XP_004140075.1	1.1e-202	91.98	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]
XP_008456519.1	2.1e-201	91.98	PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi...	[more]
XP_022956132.1	7.0e-197	89.22	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]
XP_022133495.1	1.2e-196	90.30	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Mom...	[more]

BLAST of Cla97C08G150470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L960	3.8e-137	63.10	Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A...	[more]
O67444	2.3e-33	36.29	Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V...	[more]
O05668	1.4e-30	39.21	Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai...	[more]
P35159	2.4e-30	36.53	Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16...	[more]
P9WHQ0	5.3e-30	38.33	Uncharacterized RNA pseudouridine synthase MT1751.1 OS=Mycobacterium tuberculosi...	[more]

BLAST of Cla97C08G150470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I9	1.0e-201	91.98	uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX...	[more]
A0A6J1GVH4	3.4e-197	89.22	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1BVE6	5.8e-197	90.30	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M...	[more]
A0A6J1JT41	9.9e-197	88.97	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A1S4E166	8.4e-196	93.67	ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3...	[more]

BLAST of Cla97C08G150470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39140.1	2.7e-138	63.10	pseudouridine synthase family protein	[more]
AT3G43340.1	8.1e-26	74.32	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 148..207 e-value: 2.8E-14 score: 63.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 148..190 e-value: 4.2E-11 score: 42.4
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 148..215 e-value: 7.64975E-11 score: 55.7186
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 144..204 e-value: 6.5E-19 score: 69.0
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	GENE3D	3.30.70.1560		coord: 288..373 e-value: 4.9E-46 score: 158.3
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 211..352 e-value: 2.4E-15 score: 57.0
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 211..389 e-value: 4.9E-46 score: 158.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..133
None	No IPR available	PANTHER	PTHR47683	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	coord: 40..392
None	No IPR available	PROSITE	PS50889	S4	coord: 148..217 score: 14.38512
None	No IPR available	CDD	cd02870	PseudoU_synth_RsuA_like	coord: 211..369 e-value: 9.60534E-44 score: 148.411
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 117..230
IPR018496	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	PROSITE	PS01149	PSI_RSU	coord: 259..273
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 210..387

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G150470.2	Cla97C08G150470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0032544	plastid translation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016866	intramolecular transferase activity