Cla97C08G146475 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G146475
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	E3 ubiquitin-protein ligase RNF170
Location	Cla97Chr08: 4973800 .. 4976926 (-)
RNA-Seq Expression	Cla97C08G146475
Synteny	Cla97C08G146475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGTTGATTCTTTTGCTTCATTTCCTTTTCCCTTTTGATGCTTTGTTCTTAATTTCATCTCTCTTCAACGATTCTGTTCCTCTATTTCATATTCACATTTCATTTCTCTGCACAGTCCACTAGTTTTCTTCGTATTTGGAGTGTGGTTGCAGTTTTTCCCTTTGTCCTGGTAGTCACATTAACCGTGGCTTCTTCCTTAGTTATCCGAAATCGCGAATTCTATTCTCTTCGAGCTACTTAGTTTTTACCGATGGATAAGTCTGGGAGGAGAACTGCTGTTTATTGGTAACGTGTTTTAGAACTTCTGCACTTCCGCAAATGGCAAATGAAACCAAAATCTGAACAATGGAGTCAATCCCATAAAATTAAGAGAGAGTTCATCTAGTTTTCGGATTAGAAAGGAACTTCGTGGTCTCCATTTCGACTTTGGGAACTTGTTGTGTAAAAAGTGCATTAAATCATGAGATATGCATGAAAATTTTGAATGTTGGAAATAAAAAGTTTTGCTTCTATCCACCCCTATATTTTTGCATCATTAGGTGTCTTAATATCCCTTTTATGAGATTTGTTTGTAAAATACTTGAACAAAAGAAAAAGACATGTTCAACTCTACAAGTTTAGTTTCTTTTAGAAAATTGACCTGAAAAATGAATCTGAATTGAAGGTACTATGTCTTTTTGTTTGTCTTTTTGTCTTTTTTATTTTATTTATTAAATTTTCCTCCTGATGTCTTGATGTTGTAATTTTATGGTATATTGCCTAATTCTTCTTTAGAGAATTATCTTCCATTTACATCTACTGAGGGTAAGAGCCTATTTTTGAGGGTAAACTTAACTCTTCTGGGCTTTGTTTTCCTGGCATTCATCTTTTTGTACGGCCTTAGGCTGTGGTTTTCTTTTCTTGACTCAATATTATTGAACTGGATTGGTTAGTTAGTTGATTTTTTTCTCACTTCCTCGTCTTCTCTGAAGCTCACCGCATTTGCTGCTTTCCTGTATGCAGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGGTAGTTCTCTTTTTTTTGCATAATTTCTGTAATGAACTGCTAGTTAAGTTATTGTTGAATCTGCTTTGGAACGTGAAAAATGATTTGCCATGAAGAATTGACCACAGAGAGTGAGCATAGGTCAATTGCTAGCGCAGGAAGTGTTATTCTGGTCCAGTGAGAACAATTAGGATCAAGAAACTGAAGTAAATGGCCTAGATAGGTCTCTAGTCTCTTCATATGAGGAGATAATGATAAGTCATCAACAATAATAAATTAGTTAATTAATTTTTGAAAAGGATACAAAACTTTTCATTAAGAAAATGAAAAGAGACTAATGCTCAAGGATACATGAAAACAAAGAGACGAAGAGGAAGACAAAGCCTTGAAGGTAGGAAATGGACATTGGACATAGCGTGCTGATTATTCCCCAATTCAAAGCCTTCAGTCTAAGCCCTATTTTCAGCAAGATTCAACATTCTACTAAGGCAATTCAACACAAGAATAATGAATAAAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTCGAGGCAAGAATATCTTCCCTGTAGGATTTTTACATATCAACCTAACTAAGATCCTGCAAATGCAAAAGATAACACCCAAACAAGAAACAGAGCAATGCAAAAAAGGAATATATGTTTATTTCCAGCAATGTCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACGCAATCCTCCAGCCACTTCAAGAGGGCTGGGTTCTCTCCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGGTTACTACCTGTTTTCCCCCTTACATACCAACATTCCCTGCCACCCATACTCTCAAAATCAAGTCCCACTTCCTTTAACTAACCGTTGGGCATACCAATACCCTTTCTACCCCTGCTACTATAAGTTTTCGACACTTGGGGCCTCACTATTTTCCTTTGATGATAATTGAGAAATTAGCCGAAGAGAGACAACCTCTTATCCTTTTTTTAAAAAATATTTTTTATTTTACTATTTTATTATTTTTTTAAAAAAAATTTTTAAAAGAAGAGACAACCTCTAATCTAAAGCCTTTTACTTCCAGATATTGTTGAGAATGTCCTAATCAACTTTATCGAGAACCTTCCCAATATCTAACTTTATAACAACCTTGGGTTTTTGCTTTCGCTTCTCATTTACTTCATTTGTAATAAGAGATGCATCAATGATTTGGCGACTGTTTACAAAAATGGATTGATTTTCTGTGATGGTGGATTTAAGGACTTTTCTTAGTTTCTCTAATAGAACTCTAGCAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGTTGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATTTGTTAGTGCCCAAATCATGTACAACTCTATGAATTTTCTCATCCGAGAAAGGGAGTTCCAGCATCATCCTTGTAATGGGGCTGCAATTAATGGAATGAGGCAGAAATTTGTTGCCAGCTTTTTTAGAATAAAGTTGTCGGTAAAAATCAACAAAAGATTTTTACACAGTTACACAGTCAGCTTTTATGTCACAGTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGATTGTGGTCTTTCTACGTTTTGCAGCTACACGACTATGGAAGAAGGTGGAAATTTCATCACCATCAGCTCACTAATTGGATTCACAGCGCTTTCTCCACATAATCATTTCATTTGCAGCAATGGATAA

mRNA sequence

ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTCGAGGCAAGAATATCTTCCCTCAATGTCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACGCAATCCTCCAGCCACTTCAAGAGGGCTGGGTTCTCTCCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGAACTCTAGCAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGTTGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATTTTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGATTGTGGTCTTTCTACGTTTTGCAGCTACACGACTATGGAAGAAGGTGGAAATTTCATCACCATCAGCTCACTAATTGGATTCACAGCGCTTTCTCCACATAATCATTTCATTTGCAGCAATGGATAA

Coding sequence (CDS)

ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTCGAGGCAAGAATATCTTCCCTCAATGTCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACGCAATCCTCCAGCCACTTCAAGAGGGCTGGGTTCTCTCCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGAACTCTAGCAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGTTGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATTTTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGATTGTGGTCTTTCTACGTTTTGCAGCTACACGACTATGGAAGAAGGTGGAAATTTCATCACCATCAGCTCACTAATTGGATTCACAGCGCTTTCTCCACATAATCATTTCATTTGCAGCAATGGATAA

Protein sequence

MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGDNGAPCGEPLEARISSLNVNDTKQNTMNKQNVSKRNPPATSRGLGSLLYSTQLTFFSKKNSSNDLIEVSGEANGQNQDLASILLGMRQMQVLLMLALVISFSRKPLNTLLLSTLRVFQEIFSEETHPCSGKDFNDCGLSTFCSYTTMEEGGNFITISSLIGFTALSPHNHFICSNG

Homology

[Close]

BLAST of Cla97C08G146475 vs. NCBI nr
Match: XP_038884722.1 (DNA mismatch repair protein MLH1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-50
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP GDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPVGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEV RVLNNIRTYNRHFGGNSTG SQ
Sbjct: 61 PSEVSPIQQSDPEVERVLNNIRTYNRHFGGNSTGLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. NCBI nr
Match: XP_038884720.1 (E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida] >XP_038884721.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-50
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP GDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPVGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEV RVLNNIRTYNRHFGGNSTG SQ
Sbjct: 61 PSEVSPIQQSDPEVERVLNNIRTYNRHFGGNSTGLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. NCBI nr
Match: XP_008463070.1 (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-49
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPAGDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRR I+LLV
Sbjct: 1  MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. NCBI nr
Match: XP_031743956.1 (E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus] >KAE8646587.1 hypothetical protein Csa_005542 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-48
Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP GDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP  PCKCPLCRR I+LLV
Sbjct: 1  MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. NCBI nr
Match: XP_031743949.1 (DNA mismatch repair protein MLH1 isoform X1 [Cucumis sativus] >XP_031743950.1 DNA mismatch repair protein MLH1 isoform X1 [Cucumis sativus] >XP_031743951.1 DNA mismatch repair protein MLH1 isoform X1 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-48
Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP GDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP  PCKCPLCRR I+LLV
Sbjct: 1  MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot
Match: F1MK05 (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus OX=9913 GN=RNF170 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-10
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+P  V     
Sbjct: 88  CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLP--VFGEND 147

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
              +V  +  +I  YNR F G
Sbjct: 148 QSQDVVSLHQDISDYNRRFSG 166

[Close]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot
Match: Q8CBG9 (E3 ubiquitin-protein ligase RNF170 OS=Mus musculus OX=10090 GN=Rnf170 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-10
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+       Q 
Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 174

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
            D  V R+  ++  YNR F G
Sbjct: 175 QD--VIRLRQDVNDYNRRFSG 193

[Close]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot
Match: Q96K19 (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens OX=9606 GN=RNF170 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 8.4e-10
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+       Q 
Sbjct: 87  CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 146

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
            D  V R+  +I  YNR F G
Sbjct: 147 QD--VLRLHQDINDYNRRFSG 165

[Close]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot
Match: Q3V3A7 (RING finger protein 207 OS=Mus musculus OX=10090 GN=Rnf207 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 20/61 (32.79%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 9  ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQ 68
          +C +CHG++  PC  +C H FC  C+      G       CPLC+ Q  +  PS + P+ 
Sbjct: 24 VCPLCHGQYERPCLLDCFHDFCTGCLRGRATDGR----LSCPLCQHQTLVKGPSGLPPVD 80

Query: 69 Q 70
          +
Sbjct: 84 R 80

[Close]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot
Match: A0JNG4 (RING finger protein 207 OS=Bos taurus OX=9913 GN=RNF207 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-04
Identity = 23/76 (30.26%), Postives = 36/76 (47.37%), Query Frame = 0


Query: 1  MDGPPAGD-------ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCR 60
          ++GP A D       +C +CH ++  PC  +C H FC  C+      G       CPLC+
Sbjct: 9  LEGPGALDGTSGHPLVCPLCHAQYERPCLLDCFHEFCAGCLRGRAADGR----LACPLCQ 68

Query: 61 RQISLLVPSEVSPIQQ 70
           Q  +  PS + P+ +
Sbjct: 69 HQTVVKGPSGLPPVDR 80

[Close]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL
Match: A0A1S3CIS2 (E3 ubiquitin-protein ligase RNF170 OS=Cucumis melo OX=3656 GN=LOC103501307 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-50
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPAGDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRR I+LLV
Sbjct: 1  MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL
Match: A0A6J1EVH0 (E3 ubiquitin-protein ligase RNF170 OS=Cucurbita moschata OX=3662 GN=LOC111438431 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-49
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPAGDICSICHGRFNTPCQANCSHWFCG+CIMLVWDHGSP QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSE S  QQ DPEVARVLNNIR YNRHFGGNSTG +Q
Sbjct: 61 PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQ 97

[Close]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL
Match: A0A6J1I9X5 (E3 ubiquitin-protein ligase RNF170 OS=Cucurbita maxima OX=3661 GN=LOC111471404 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPAGDICSICHGRFNTPCQANCSHWFCG+CIMLVWDHGS  QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSTLQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSE S  QQ DPEVARVLNNIR YNRHFGGNSTG +Q
Sbjct: 61 PSEASVTQQSDPEVARVLNNIRNYNRHFGGNSTGLNQ 97

[Close]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL
Match: A0A6J1DFH0 (E3 ubiquitin-protein ligase RNF170 OS=Momordica charantia OX=3673 GN=LOC111019617 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.0e-43
Identity = 80/101 (79.21%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
           MDGPPAGD CSICHG FN PCQANCSHWFCG CIMLVWDHGS  QPCKCPLCRRQI+LLV
Sbjct: 1   MDGPPAGDFCSICHGSFNIPCQANCSHWFCGSCIMLVWDHGSSLQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD 102
           PSE S  QQ +PEVAR+LNNIRTYN HFG NS G  Q   D
Sbjct: 61  PSEASARQQSNPEVARILNNIRTYNHHFGDNSAGLIQRMQD 101

[Close]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL
Match: A0A067JVY1 (E3 ubiquitin-protein ligase RNF170 OS=Jatropha curcas OX=180498 GN=JCGZ_22198 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.4e-37
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
           MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRRQI+LLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD 102
           PSE S  ++ +PEVA +L  + TYNR FGG +TG  Q   D
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQD 101

[Close]

BLAST of Cla97C08G146475 vs. TAIR 10
Match: AT1G22510.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-36
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
           M+ PP  ++CSICHG FN PCQ+NCSHWFCG CIMLVW HGS  +PCKCPLCRR ISLLV
Sbjct: 1   MNAPPENELCSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGSTLRPCKCPLCRRPISLLV 60

Query: 61  PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD 102
           PSE +   + D  V+ VL+++ TYNR FGG S+G  Q   D
Sbjct: 61  PSEETVRSRNDATVSEVLHDVETYNRVFGGQSSGLIQRMQD 101

[Close]

BLAST of Cla97C08G146475 vs. TAIR 10
Match: AT1G72175.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-35
Identity = 64/101 (63.37%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
           M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRR ISLLV
Sbjct: 1   MNSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLV 60

Query: 61  PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD 102
           PSE +   + D  V  VL N+ TYNR FGG S+   Q   D
Sbjct: 61  PSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQRMQD 101

[Close]

BLAST of Cla97C08G146475 vs. TAIR 10
Match: AT4G33940.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-23
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 2   DGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVP 61
           + PP  D+C IC G F  PC+ NC HW+CG CI+  W++ +  +PCKCP+C R I+ L P
Sbjct: 66  ESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSP 125

Query: 62  SEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
            E S  ++ + EV  VL+ +R YNR F G  TGF Q
Sbjct: 126 -EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQ 160

[Close]

BLAST of Cla97C08G146475 vs. TAIR 10
Match: AT1G22510.2 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 31  GKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG 90
           G CIMLVW HGS  +PCKCPLCRR ISLLVPSE +   + D  V+ VL+++ TYNR FGG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG 108

Query: 91  NSTGFSQGKGD 102
            S+G  Q   D
Sbjct: 109 QSSGLIQRMQD 119

The following BLAST results are available for this feature:

BLAST of Cla97C08G146475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884722.1	1.2e-50	93.81	DNA mismatch repair protein MLH1-like isoform X3 [Benincasa hispida]	[more]
XP_038884720.1	1.2e-50	93.81	E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida] >XP_03888...	[more]
XP_008463070.1	1.4e-49	92.78	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
XP_031743956.1	1.5e-48	90.72	E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus] >KAE8646587.1 hy...	[more]
XP_031743949.1	1.5e-48	90.72	DNA mismatch repair protein MLH1 isoform X1 [Cucumis sativus] >XP_031743950.1 DN...	[more]

BLAST of Cla97C08G146475 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F1MK05	4.9e-10	37.04	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus OX=9913 GN=RNF170 PE=3 SV=2	[more]
Q8CBG9	6.5e-10	37.04	E3 ubiquitin-protein ligase RNF170 OS=Mus musculus OX=10090 GN=Rnf170 PE=1 SV=1	[more]
Q96K19	8.4e-10	38.27	E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens OX=9606 GN=RNF170 PE=1 SV=2	[more]
Q3V3A7	1.8e-04	32.79	RING finger protein 207 OS=Mus musculus OX=10090 GN=Rnf207 PE=2 SV=2	[more]
A0JNG4	2.4e-04	30.26	RING finger protein 207 OS=Bos taurus OX=9913 GN=RNF207 PE=2 SV=1	[more]

BLAST of Cla97C08G146475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIS2	6.6e-50	92.78	E3 ubiquitin-protein ligase RNF170 OS=Cucumis melo OX=3656 GN=LOC103501307 PE=4 ...	[more]
A0A6J1EVH0	9.6e-49	89.69	E3 ubiquitin-protein ligase RNF170 OS=Cucurbita moschata OX=3662 GN=LOC111438431...	[more]
A0A6J1I9X5	1.1e-47	88.66	E3 ubiquitin-protein ligase RNF170 OS=Cucurbita maxima OX=3661 GN=LOC111471404 P...	[more]
A0A6J1DFH0	6.0e-43	79.21	E3 ubiquitin-protein ligase RNF170 OS=Momordica charantia OX=3673 GN=LOC11101961...	[more]
A0A067JVY1	6.4e-37	69.31	E3 ubiquitin-protein ligase RNF170 OS=Jatropha curcas OX=180498 GN=JCGZ_22198 PE...	[more]

BLAST of Cla97C08G146475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22510.1	4.1e-36	62.38	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G72175.1	2.7e-35	63.37	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT4G33940.1	1.4e-23	46.88	RING/U-box superfamily protein	[more]
AT1G22510.2	1.0e-18	59.15	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 10..52 e-value: 0.0023 score: 27.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 10..53 score: 10.718918
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 4..96 e-value: 3.3E-12 score: 48.2
IPR038896	E3 ubiquitin-protein ligase RNF170	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 2..98
None	No IPR available	PANTHER	PTHR22894:SF10	BNAC07G13660D PROTEIN	coord: 2..98
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 8..59
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 25..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G146475.1	Cla97C08G146475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity