Cla97C08G144850 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G144850
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionElongation factor 1-gamma
LocationCla97Chr08: 1158676 .. 1159532 (-)
RNA-Seq ExpressionCla97C08G144850
SyntenyCla97C08G144850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCCTTTCTTTTTTCTTTAACCATTCTTTTTCAGGTACAAATCCCCCTTTTGCCTTTTCGAATTCTCTCAATTCCATTCCTGTTTTCTCTTTTAAACTATGGTAGCTAAAGCGACCTGGATTGCCTCAACAATTGTACCTATGATCATTGTTCCTTGCTTTTTCTGCTGAAATTTTGTCTCAATACTTTTTCATCATTATTGCTTTTGGGATAACTTTATTCTGTTTAGTAATGATTTGGGGAATTGTCTTCTTAAATATACATGGCAATTTGTATAGAAATAAGCAAAAAGAATGGTGGGAGAAATGATTCCAGAGTTTCATTGCAATTGCTTCGAATATTACTTCAATATCTCAAATACCCTTTTTGCATCTGTATTGTGTATTTGTGTTTCTTGAGAAAGCATTGAAATGTTCATGATTTAATTCTATACGTTTTTTACTTGTGTGAAAAGGGAAAAAAAAAAAAAACGAAAGACAAGGAATTCCAATTTGAATGCTTTTTGTAGACCTCGAGTTCCAGTTGAATGAGCAAATCAGGTTTTTTGTTTGGTTTTTCTTATCTTTCTAGTGTTGGCAAATGACCATTCAAGTGGTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCAATGGGGATCAAGATAATAATCATATGTCTAGGAGTTGTGACTGTCATTGCCTTTTCTGTGATTCTATTCAAGATATGGCAAAAGAAGAAGAGAGAGGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

mRNA sequence

ATGTACGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCCTTTCTTTTTTCTTTAACCATTCTTTTTCAGTGTTGGCAAATGACCATTCAAGTGGTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCAATGGGGATCAAGATAATAATCATATGTCTAGGAGTTGTGACTGTCATTGCCTTTTCTGTGATTCTATTCAAGATATGGCAAAAGAAGAAGAGAGAGGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

Coding sequence (CDS)

ATGTACGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCCTTTCTTTTTTCTTTAACCATTCTTTTTCAGTGTTGGCAAATGACCATTCAAGTGGTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCAATGGGGATCAAGATAATAATCATATGTCTAGGAGTTGTGACTGTCATTGCCTTTTCTGTGATTCTATTCAAGATATGGCAAAAGAAGAAGAGAGAGGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

Protein sequence

MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Homology
BLAST of Cla97C08G144850 vs. NCBI nr
Match: XP_038890666.1 (uncharacterized protein LOC120080166 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICL 60
           M GSQSSRSLQFLFF+   F HS SVLANDHSS KDGGK+KKDDARRSPSM IKIIIICL
Sbjct: 1   MSGSQSSRSLQFLFFVFLLFLHSLSVLANDHSSAKDGGKSKKDDARRSPSMVIKIIIICL 60

Query: 61  GVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           GVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  GVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 106

BLAST of Cla97C08G144850 vs. NCBI nr
Match: XP_008459655.1 (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo] >KAA0039241.1 uncharacterized protein E6C27_scaffold64G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIIC 60
           M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. NCBI nr
Match: KGN52701.1 (hypothetical protein Csa_009261 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIIC 60
           M GSQSSRSLQFLFF+ SF F+HS SVLA ++SS KDGGKTKKDDARRSPSMGIKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. NCBI nr
Match: XP_023525282.1 (uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-32
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICL 60
           M  S+SS SLQFL FL     HS SVLA DHSS KD GKTKK DA +SPS GIK++IICL
Sbjct: 1   MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKD-GKTKKPDAPKSPSTGIKMLIICL 60

Query: 61  GVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           GVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  GVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 105

BLAST of Cla97C08G144850 vs. NCBI nr
Match: KAG7037155.1 (hypothetical protein SDJN02_00777, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-32
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICL 60
           M  S+SS SLQFL FL     HS SVLA DHSS KD GKTKK DA +SPS GIK++IICL
Sbjct: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICL 126

Query: 61  GVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           GVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 127 GVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 171

BLAST of Cla97C08G144850 vs. ExPASy TrEMBL
Match: A0A5A7TC90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00300 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIIC 60
           M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. ExPASy TrEMBL
Match: A0A1S3CA76 (uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIIC 60
           M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. ExPASy TrEMBL
Match: A0A0A0KXZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.2e-41
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIIC 60
           M GSQSSRSLQFLFF+ SF F+HS SVLA ++SS KDGGKTKKDDARRSPSMGIKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. ExPASy TrEMBL
Match: A0A6J1EBZ0 (uncharacterized protein LOC111432678 OS=Cucurbita moschata OX=3662 GN=LOC111432678 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.5e-31
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIIC 60
           M  SQSSRSLQFL FL     HS SVLA++HSS ++G GK KK D  RS SMGIKI++IC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTVIAFSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of Cla97C08G144850 vs. ExPASy TrEMBL
Match: A0A6J1ICT0 (uncharacterized protein LOC111472607 OS=Cucurbita maxima OX=3661 GN=LOC111472607 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIIC 60
           M  SQSSRSLQFL FL     HS SVLA++HSS + G GK KK D  RS SMGIKI++IC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAEHGDGKAKKGDGWRSRSMGIKIVLIC 60

Query: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           LGVVTV+AFSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  LGVVTVLAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of Cla97C08G144850 vs. TAIR 10
Match: AT1G57765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-16
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 22  HSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKR 81
           H F  ++ D +S   G K +   +  S   G K+I I LG   V   S  L+K+WQKKKR
Sbjct: 25  HFFLGISGDPNSSSTGAKAESHTS--SSKTGTKVIFILLGFGAVAGLSFFLYKLWQKKKR 84

Query: 82  EEQHARLLKLFEDDDELEVELGLRD 107
           +EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 85  DEQYARLLKLFEEDDELEVELGLRD 107

BLAST of Cla97C08G144850 vs. TAIR 10
Match: AT1G09645.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 9.0e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 11  QFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSV 70
           + LFF S      F  L+ D  +   G KT+   +  S   G K+I++ +G V V  FS 
Sbjct: 14  RLLFFASIGLQF-FLGLSGDSKNTNAGVKTESHTS--SSKTGTKVILVLVGFVAVAMFSF 73

Query: 71  ILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
            L+K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 74  FLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 106

BLAST of Cla97C08G144850 vs. TAIR 10
Match: AT1G57765.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1). )

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 14  FFLSFFFNHS-FSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVIL 73
           FFL+  +  S +  ++ D +S   G K +   +  S   G K+I I LG   V   S  L
Sbjct: 26  FFLAMLYLDSVYQCISGDPNSSSTGAKAESHTS--SSKTGTKVIFILLGFGAVAGLSFFL 85

Query: 74  FKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107
           +K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 86  YKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117

BLAST of Cla97C08G144850 vs. TAIR 10
Match: AT3G53490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 33  SGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLF 92
           S K+ G T+K++ +     GI ++I+ L +  V    ++ +K W+KKKR+++ AR LKLF
Sbjct: 151 SNKESG-TEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQQEQARFLKLF 210

Query: 93  EDDDELEVELGLRD 107
           ED D++E ELGL +
Sbjct: 211 EDGDDIEDELGLEN 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038890666.13.4e-4190.57uncharacterized protein LOC120080166 [Benincasa hispida][more]
XP_008459655.13.4e-4190.65PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo] >KAA0039241.1 unc... [more]
KGN52701.11.7e-4088.79hypothetical protein Csa_009261 [Cucumis sativus][more]
XP_023525282.18.4e-3279.25uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo][more]
KAG7037155.18.4e-3279.25hypothetical protein SDJN02_00777, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TC901.7e-4190.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CA761.7e-4190.65uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=... [more]
A0A0A0KXZ08.2e-4188.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1[more]
A0A6J1EBZ04.5e-3176.64uncharacterized protein LOC111432678 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ICT01.3e-3075.70uncharacterized protein LOC111472607 OS=Cucurbita maxima OX=3661 GN=LOC111472607... [more]
Match NameE-valueIdentityDescription
AT1G57765.16.9e-1652.94unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G09645.19.0e-1651.04unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G57765.21.5e-1550.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G53490.15.3e-0840.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..47
NoneNo IPR availablePANTHERPTHR33780EXPRESSED PROTEINcoord: 4..106
NoneNo IPR availablePANTHERPTHR33780:SF2OS05G0419600 PROTEINcoord: 4..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G144850.1Cla97C08G144850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane