Cla97C07G144510 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C07G144510
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Structural maintenance of chromosomes protein
Location	Cla97Chr07: 31864507 .. 31864805 (-)
RNA-Seq Expression	Cla97C07G144510
Synteny	Cla97C07G144510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTATGAGAAAGAATATCAGGTAACAGATGTGTTCATGTGTCAATATCAGGTAAAGCTTGTGTTGGAGTCTCACCCATACAAAGAGGGTCTGTTAGAAGCTTTACAAAAGGTCAGTGCTATTTCTTTGATTTTCTGTACTAACTAATTAATGCATCAATATTGATTTGATTGATCACCCTGTTAATCTATATCTTTATGCAGGAACATGCATTTGAATTGGAGAGAGTACGGAAGTTGAAAGATGAGATACACAACCTTTCAGCACAATTATCTAGCCTTGAATTCAAGTAA

mRNA sequence

ATGGAAGGTTATGAGAAAGAATATCAGGTAACAGATGTGTTCATGTGTCAATATCAGGTAAAGCTTGTGTTGGAGTCTCACCCATACAAAGAGGGTCTGTTAGAAGCTTTACAAAAGGAACATGCATTTGAATTGGAGAGAGTACGGAAGTTGAAAGATGAGATACACAACCTTTCAGCACAATTATCTAGCCTTGAATTCAAGTAA

Coding sequence (CDS)

ATGGAAGGTTATGAGAAAGAATATCAGGTAACAGATGTGTTCATGTGTCAATATCAGGTAAAGCTTGTGTTGGAGTCTCACCCATACAAAGAGGGTCTGTTAGAAGCTTTACAAAAGGAACATGCATTTGAATTGGAGAGAGTACGGAAGTTGAAAGATGAGATACACAACCTTTCAGCACAATTATCTAGCCTTGAATTCAAGTAA

Protein sequence

MEGYEKEYQVTDVFMCQYQVKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK

Homology

[Close]

BLAST of Cla97C07G144510 vs. NCBI nr
Match: KAG6576803.1 (Structural maintenance of chromosomes protein 2-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LEALQKE AFE+ERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLSLESLPYKEGQLEALQKERAFEMERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. NCBI nr
Match: KAA0067664.1 (structural maintenance of chromosomes protein 2-1-like [Cucumis melo var. makuwa] >TYK23668.1 structural maintenance of chromosomes protein 2-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VK  LES PYKEG LEALQKE AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKFALESLPYKEGQLEALQKERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. NCBI nr
Match: XP_023553225.1 (structural maintenance of chromosomes protein 2-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LEALQKE AFE+ERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLSLESLPYKEGQLEALQKERAFEMERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. NCBI nr
Match: XP_022923087.1 (structural maintenance of chromosomes protein 2-1 [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LEALQKE AFE+ERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLSLESLPYKEGQLEALQKERAFEMERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. NCBI nr
Match: XP_008439082.1 (PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 2-1-like [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VK  LES PYKEG LEALQKE AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKFALESLPYKEGQLEALQKERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. ExPASy Swiss-Prot
Match: Q9SN90 (Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis thaliana OX=3702 GN=SMC2-2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEF 68
           VK   +S PYKEG +EAL+K+   ELE   +LKD++H LSAQL++++F
Sbjct: 459 VKRAFDSLPYKEGQMEALEKDRESELEIGHRLKDKVHELSAQLANVQF 506

[Close]

BLAST of Cla97C07G144510 vs. ExPASy Swiss-Prot
Match: Q9C5Y4 (Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=SMC2-1 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEF 68
           VK  LES PY EG +EAL+K+   ELE V++L+D++  LSAQL++ +F
Sbjct: 459 VKKALESIPYNEGQMEALEKDRGAELEVVQRLEDKVRGLSAQLANFQF 506

[Close]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL
Match: A0A5D3DJK7 (Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00340 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VK  LES PYKEG LEALQKE AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKFALESLPYKEGQLEALQKERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL
Match: A0A6J1E568 (Structural maintenance of chromosomes protein OS=Cucurbita moschata OX=3662 GN=LOC111430862 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LEALQKE AFE+ERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLSLESLPYKEGQLEALQKERAFEMERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL
Match: A0A1S3AXY4 (Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC103483977 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VK  LES PYKEG LEALQKE AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKFALESLPYKEGQLEALQKERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL
Match: A0A6J1CJE8 (Structural maintenance of chromosomes protein OS=Momordica charantia OX=3673 GN=LOC111011547 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LE+LQ+E AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLALESLPYKEGHLESLQRERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL
Match: A0A6J1CHH2 (structural maintenance of chromosomes protein 2-1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011547 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEFK 69
           VKL LES PYKEG LE+LQ+E AFELERV+KLKDEI NLSAQL+S+EFK
Sbjct: 459 VKLALESLPYKEGHLESLQRERAFELERVQKLKDEIRNLSAQLASVEFK 507

[Close]

BLAST of Cla97C07G144510 vs. TAIR 10
Match: AT3G47460.1 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEF 68
           VK   +S PYKEG +EAL+K+   ELE   +LKD++H LSAQL++++F
Sbjct: 459 VKRAFDSLPYKEGQMEALEKDRESELEIGHRLKDKVHELSAQLANVQF 506

[Close]

BLAST of Cla97C07G144510 vs. TAIR 10
Match: AT5G62410.1 (structural maintenance of chromosomes 2 )

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-07
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 20  VKLVLESHPYKEGLLEALQKEHAFELERVRKLKDEIHNLSAQLSSLEF 68
           VK  LES PY EG +EAL+K+   ELE V++L+D++  LSAQL++ +F
Sbjct: 459 VKKALESIPYNEGQMEALEKDRGAELEVVQRLEDKVRGLSAQLANFQF 506

The following BLAST results are available for this feature:

BLAST of Cla97C07G144510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576803.1	1.2e-10	81.63	Structural maintenance of chromosomes protein 2-2, partial [Cucurbita argyrosper...	[more]
KAA0067664.1	1.2e-10	81.63	structural maintenance of chromosomes protein 2-1-like [Cucumis melo var. makuwa...	[more]
XP_023553225.1	1.2e-10	81.63	structural maintenance of chromosomes protein 2-1 [Cucurbita pepo subsp. pepo]	[more]
XP_022923087.1	1.2e-10	81.63	structural maintenance of chromosomes protein 2-1 [Cucurbita moschata]	[more]
XP_008439082.1	1.2e-10	81.63	PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 2-...	[more]

BLAST of Cla97C07G144510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN90	3.1e-06	52.08	Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis thaliana OX=370...	[more]
Q9C5Y4	5.3e-06	52.08	Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Cla97C07G144510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJK7	5.7e-11	81.63	Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1E568	5.7e-11	81.63	Structural maintenance of chromosomes protein OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S3AXY4	5.7e-11	81.63	Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1CJE8	1.3e-10	79.59	Structural maintenance of chromosomes protein OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1CHH2	1.3e-10	79.59	structural maintenance of chromosomes protein 2-1-like isoform X2 OS=Momordica c...	[more]

BLAST of Cla97C07G144510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47460.1	2.2e-07	52.08	Structural maintenance of chromosomes (SMC) family protein	[more]
AT5G62410.1	3.8e-07	52.08	structural maintenance of chromosomes 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G144510.1	Cla97C07G144510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0007076	mitotic chromosome condensation
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000793	condensed chromosome
cellular_component	GO:0000796	condensin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003682	chromatin binding