Cla97C07G142080 (gene) Watermelon (97103) v2.5

Overview
NameCla97C07G142080
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerases II and V subunit 8A-like
LocationCla97Chr07: 29595326 .. 29597703 (+)
RNA-Seq ExpressionCla97C07G142080
SyntenyCla97C07G142080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTTTGGAAAATCAAAGTCGTTCTCAGGTAGTATATAGATTTAGCCAAAATTCAATTAAGCCGCTGCTGTCCCCAACCCTCAGCCTCCGATTCTCTCTTCTCAGCTTTCTCCATCTCTGCAATCACCTCTCTCTCGTCTCTGTCTGTACTCTCTGTTCTCTCTCGTCTCCGATTTCGCTGAGGTATGTATAAAGTAAATTTTAAATTTGAGTTTTGAGTTTGATTCTGATGTACGACGTATGTAAATCTCGATCTCACATACTCACATTCAGTCTTTGAGTTTGGGTTCTGATGTGCTTGGGTTCTATGTGCTTGTGAATCTGTAATCTGGGCCTCACTCAGTCGGCTGCCTCCCCTTTTACACTGAATGTTTAATACACTTGTTGCTTTTCAATCTTTTAATCTGTTGTTTTCTGTTTGTTTTTTCGTTGGCCTGGTTCTTTTATCTAACGGGCATACATTTTCTAGCACTGTTTGTTAATTTCCATTATCACCTTGTTAATTTTTCGGGTTTGCATTAACTTTTGACAGGCAGAGTAGTCATTGTAAGGATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGGTACGTTTTTGTGTAGTAGTCACTCTCTTTTCCTTTATATAATATTTCCAGGGAGGCTTAGTTTGTCTCCATGATGGAGTTATAGACTTATAGCCTTGCAACTCTTCAAATAAAATGAAAAAAGTTTCTTTGTGAAAAAATAAATAAACTATGATGATGTAACTGCATTGAATCATTAATCTGATAGATTAAAGTCTTGAAGTCTAAAACGTTGAAAATGGCGTCTGAAGTCTTGTATTTCTCTTGGAAGATGCGAGAATTGGAAACATCTATATGAAATGGTTTTCTTTTGTATTTTTGGATATCTTCGGATATTTCATTTATCAATGAAATTGTCTCTTATCTAAAAAAAGAAAAAAAGAAAAATCTGAAATACCTCTCTAAACGTGCTGATTGTTTTTAATATTTACTTGAGCCTTTTACAAACTTGCTGTGCTATTACTGTATCATGAACCTTTTTTCTTTTGTATCTCCGTCCCTTGTCGACTCACCAATTTGCATACATATTCTTCTTTTACCCATTGATGTGAGTAGAATCTTCTCGTTCATTATTTATTGATCTTGTAGAGGTTTCCTTTCACCCAGTTAGGGATGTCATCTGGAATATAATAATTTCTTTATTACAAGTCATGTAAAATATGTTTAAAAAAAGTTTTCAACAAATTTAGGCAGATGCCATTTATGTTTCCTCAATCTGTCTAACAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGTAACCTGTTCTTCCATTGATTATATAGTCTGTTGCACACTAGACGGAGTGTGGTATTGGTAAGAAAATAATTTCCTGGTATAGCAGTTACTGATCGAATGAAGAATTTAGTAGTCCATTTCGTCATAAACTCTACTAGTTTTGAAATATCACTTCGAACATTAATAGGTAGCTAGAAACTTTCAATCTACTAGGAAATATATGCTTTTCATGGTTAATGCATATGTCTATTTACTGTCATGACTGGTCTTCATTGTTTTCTGACAACTATATTTGTTTCTTGCATCTGTTCAAATACTAATTTGGTCTTAAGCATTCTCAATACTTGAATATGTTTGTTTAAGAATCGTTAGGTTGCATAACAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGTATGTGCTATAACTTCTCGAAACAATTTTGATGCGACACTTTAATTCTACTGTATGAGCATTAGAGAACCGAGAGCTTGACATTTCACAGTGCATTCTCCTGTCTCTGTAATGGCTACATAATTATGTGGTTAAAATTCATTTTAGTTTCTTTTTCTGAACTTCTTGAACATACATATATTCTAGTTGAATTATTATCTTAAAAAAATATATTCCATCTGAATCCAGTGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

mRNA sequence

ATGAAAATTTTGGAAAATCAAAGTCGTTCTCAGGTAGTATATAGATTTAGCCAAAATTCAATTAAGCCGCTGCTGTCCCCAACCCTCAGCCTCCGATTCTCTCTTCTCAGCTTTCTCCATCTCTGCAATCACCTCTCTCTCGTCTCTGTCTGTACTCTCTGTTCTCTCTCGTCTCCGATTTCGCTGAGAGTAGTCATTGTAAGGATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

Coding sequence (CDS)

ATGAAAATTTTGGAAAATCAAAGTCGTTCTCAGGTAGTATATAGATTTAGCCAAAATTCAATTAAGCCGCTGCTGTCCCCAACCCTCAGCCTCCGATTCTCTCTTCTCAGCTTTCTCCATCTCTGCAATCACCTCTCTCTCGTCTCTGTCTGTACTCTCTGTTCTCTCTCGTCTCCGATTTCGCTGAGAGTAGTCATTGTAAGGATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

Protein sequence

MKILENQSRSQVVYRFSQNSIKPLLSPTLSLRFSLLSFLHLCNHLSLVSVCTLCSLSSPISLRVVIVRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGIPHIAASLNLTRGCFFSSGRCEALSFDLNSNDLLLEKLRTSPIAIRNVYC
Homology
[Close]
BLAST of Cla97C07G142080 vs. NCBI nr
Match: KAG6597681.1 (DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-54
Identity = 115/131 (87.79%), Postives = 118/131 (90.08%), Query Frame = 0 

Query: 48  VSVCTLCSLSSPISLRVVIVRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFM 107
           + V T   L  P   RV +VRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFM
Sbjct: 158 LGVATSMYLGLP-QFRVSVVRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFM 217

Query: 108 HLDINSEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRIS 167
           HLDIN+EIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRIS
Sbjct: 218 HLDINTEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRIS 277

Query: 168 ESSGHGGKAGI 179
           ESSGHGGKA I
Sbjct: 278 ESSGHGGKAEI 287

[Close]
BLAST of Cla97C07G142080 vs. NCBI nr
Match: XP_038879439.1 (DNA-directed RNA polymerases II and V subunit 8A-like [Benincasa hispida] >XP_038879448.1 DNA-directed RNA polymerases II and V subunit 8A-like [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. NCBI nr
Match: XP_022932746.1 (DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_022932747.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_023538873.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita pepo subsp. pepo] >XP_023538874.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-52
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDIN+EIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. NCBI nr
Match: XP_004152137.1 (DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus] >KGN53006.1 hypothetical protein Csa_014470 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-52
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. NCBI nr
Match: XP_008454076.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-52
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLD+NSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDVNSEIYPLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match: Q9M1A8 (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.6e-36
Identity = 66/105 (62.86%), Postives = 89/105 (84.76%), Query Frame = 0 

Query: 72  LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 131
           ++F+DIF +++L+PDGKKFDKVTR+EA+S   +MFMHLD+N+E+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 132 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 177
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match: O81097 (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 0 

Query: 72  LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 131
           +LF+DIF +++L+PDGKKFDKVTR++A S   +MFMHLD+N+E+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 132 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 177
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match: Q54YW8 (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-19
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           M  +LF+D F+++ ++PDGKKFD+V+R    SE ++M + +DI + IY L   E+F M L
Sbjct: 1   MTSILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLGH-ERFKMVL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESS 171
           A +LNLDG+ D       N+ SLAD+Y+YVM GK+F+  + +
Sbjct: 61  ASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKEN 101

[Close]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match: P52434 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=9606 GN=POLR2H PE=1 SV=4)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-19
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           M  +LF+DIF ++ ++P+GKKFD+V+R+  +SE F M + LD+N +IY +  G+KF + +
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 129 APTLNLDGTPDTG-YFLQGNRKSLADRYEYVMQGKLFRI 167
           A TL  DGT D G Y    +R S AD++EYVM GK++RI
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRI 99

[Close]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match: Q923G2 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus OX=10090 GN=Polr2h PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-19
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           M  +LF+DIF ++ ++P+GKKFD+V+R+  +SE F M + LD+N +IY +  G+KF + +
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 129 APTLNLDGTPDTG-YFLQGNRKSLADRYEYVMQGKLFRI 167
           A TL  DGT D G Y    +R S AD++EYVM GK++RI
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRI 99

[Close]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match: A0A6J1EXM3 (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucurbita moschata OX=3662 GN=LOC111439203 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.3e-53
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDIN+EIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match: A0A0A0KYV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011050 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.3e-53
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match: A0A1S3BXS2 (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN=LOC103494598 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.9e-53
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLD+NSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDVNSEIYPLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match: A0A6J1CWD5 (DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015176 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 9.0e-53
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDIN+EIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGY+LQGNRKSLADRYEY+MQGKLFRISESSGHGG+A I
Sbjct: 61  APTLNLDGTPDTGYYLQGNRKSLADRYEYIMQGKLFRISESSGHGGRAEI 110

[Close]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match: A0A6J1I8Y6 (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucurbita maxima OX=3661 GN=LOC111470753 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 5.8e-52
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 69  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 128
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDIN+EIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMAL 60

Query: 129 APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 179
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGH GKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKAEI 110

[Close]
BLAST of Cla97C07G142080 vs. TAIR 10
Match: AT3G59600.1 (RNA polymerase Rpb8 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 66/105 (62.86%), Postives = 89/105 (84.76%), Query Frame = 0 

Query: 72  LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 131
           ++F+DIF +++L+PDGKKFDKVTR+EA+S   +MFMHLD+N+E+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 132 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 177
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

[Close]
BLAST of Cla97C07G142080 vs. TAIR 10
Match: AT1G54250.1 (RNA polymerase Rpb8 )

HSP 1 Score: 151.4 bits (381), Expect = 8.9e-37
Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 0 

Query: 72  LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 131
           +LF+DIF +++L+PDGKKFDKVTR++A S   +MFMHLD+N+E+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 132 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 177
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

The following BLAST results are available for this feature:
BLAST of Cla97C07G142080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597681.11.5e-5487.79DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperm... [more]
XP_038879439.11.3e-5399.09DNA-directed RNA polymerases II and V subunit 8A-like [Benincasa hispida] >XP_03... [more]
XP_022932746.11.1e-5297.27DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_0... [more]
XP_004152137.11.1e-5298.18DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus] >KGN53006.1 h... [more]
XP_008454076.11.4e-5297.27PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo][more]
BLAST of Cla97C07G142080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1A85.6e-3662.86DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=... [more]
O810971.3e-3563.81DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702... [more]
Q54YW82.8e-1944.12DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
P524346.3e-1947.47DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=96... [more]
Q923G26.3e-1947.47DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus OX=10... [more]
BLAST of Cla97C07G142080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EXM35.3e-5397.27DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucurbita moschata OX=3... [more]
A0A0A0KYV55.3e-5398.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011050 PE=3 SV=1[more]
A0A1S3BXS26.9e-5397.27DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN... [more]
A0A6J1CWD59.0e-5395.45DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 OS=Momordica ch... [more]
A0A6J1I8Y65.8e-5296.36DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucurbita maxima OX=366... [more]
BLAST of Cla97C07G142080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G59600.14.0e-3762.86RNA polymerase Rpb8 [more]
AT1G54250.18.9e-3763.81RNA polymerase Rpb8 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 70..214
e-value: 3.8E-38
score: 142.7
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 75..171
e-value: 3.2E-32
score: 111.6
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 69..175
NoneNo IPR availableGENE3D2.40.50.140coord: 74..185
e-value: 1.5E-36
score: 127.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 72..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G142080.2Cla97C07G142080.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity