Cla97C07G140795 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C07G140795
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	40S ribosomal protein S3
Location	Cla97Chr07: 28652055 .. 28653408 (-)
RNA-Seq Expression	Cla97C07G140795
Synteny	Cla97C07G140795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTCTCTCAGACTCTCTATCCGTCTCGCTCTCTCTCCTCTCGCTCTCGCGCGCTCTCCCTTGCATCGCTCTCTCAGTCTCTCTCTCGCTCTCGTGCTCTCTTTCAGTGTCGCTCTCGCTCTTGCCCTCTCTCAGCTCGCAAACTCGCTCCCTCTCTCAGACTCTCTCTTGCTTTCGTTGGGTCTTGCTTCCAGCGAGGTCTCGCTCTCGCTCTAGCTCTCAGTGTCGCATCCCGTCCCTCTTCTCTAAACGCATCACTTCCCTCTTCTCTAAACACAACGCCCTTCACTTCCCTCTTCTCTAAACGCAACACCCTTCACTTCCCTCTTCTTTAAACGCCTCCCATCTGAATCCCAATTTGAATCCCATTTTTCCTCTTCACCTCCGAATCCCAATCAGAATCTCATTTTTCTTCTTCACCTCCGAATCCCATTCTTCTTTCCCGCTCCCCTGTTCTTCCAATTCAGCCATAATACCAATATTATTAAAAAAAAAAAAAAAATTTTTGGTCGAGGGTTCAGAAGATTCCCCAAATTCCAATTCCAAAAAAAACTACAATATTTTTCTAAATAATTTATAAAACCACAATATACTTTTAAATTTTCCTTTTAATTAGGTGTTAAAATATTTAAATATATATATATATATATATATATGTAACTAAATGATTTGCAGCGAAGAAAACGACTTCTTTTAAATTAGTACGAGATACAAACTTTCTAACTCTATAATTCAATGGGTATTGTTTCAATTTACTTCAAGATACACCAATCTCTATGATATATTCTTATTAGTCCGCACCAAAAAAGAAAATATATATATTAAAATGGCCACCCAGTAAATTATGAACACAGCGATCTCCACCGCCCGGAAACACTCAACAAATATTATAGCGTATAGATAAAAGAACTGAAAAGGTCAAGATATTGTTATAGACATTGTTGGGCCTTGGCATCATGGTCGTCGTTCAAGTCTTTTTGATCGTCCTCCACTTTTCTCCACCCCAATTTTTTAGGGTTTCCGAGAGATTTTGAGACCAAATCGAAGAGAGGAGCAGTAGTGCACAATAGGGCGTCAATCATGGTGTCCCAAATTAGCAAGAAACGAAAGGTTACTTCCTCCGATTCACAACCAATTAAGAGATGGATCCCCTTTTTCGTTCATCTGACGTGTATTTTGGTTCCTAATTGGATTCAGTTTGTCGCTGATGGAGTTTTCTTCGCTGAGATCAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTCAGGGTTACGCCGATGCGTACTCAGATTATAATCAGGGCATCACGAACACAAAATGTTCTAGCTTAG

mRNA sequence

ATGTCGCTCTCTCAGACTCTCTATCCGTCTCGCTCTCTCTCCTCTCGCTCTCGCGCGCTCTCCCTTGCATCGCTCTCTCAGTCTCTCTCTCGCTCTCGTGCTCTCTTTCAGTGTCGCTCTCGCTCTTGCCCTCTCTCAGCTCGCAAACTCGCTCCCTCTCTCAGACTCTCTCTTGCTTTCGTTGGGTCTTGCTTCCAGCGAGGGTTTCCGAGAGATTTTGAGACCAAATCGAAGAGAGGAGCAGTAGTGCACAATAGGGCGTCAATCATGGTGTCCCAAATTAGCAAGAAACGAAAGTTTGTCGCTGATGGAGTTTTCTTCGCTGAGATCAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTCAGGGTTACGCCGATGCGTACTCAGATTATAATCAGGGCATCACGAACACAAAATGTTCTAGCTTAG

Coding sequence (CDS)

ATGTCGCTCTCTCAGACTCTCTATCCGTCTCGCTCTCTCTCCTCTCGCTCTCGCGCGCTCTCCCTTGCATCGCTCTCTCAGTCTCTCTCTCGCTCTCGTGCTCTCTTTCAGTGTCGCTCTCGCTCTTGCCCTCTCTCAGCTCGCAAACTCGCTCCCTCTCTCAGACTCTCTCTTGCTTTCGTTGGGTCTTGCTTCCAGCGAGGGTTTCCGAGAGATTTTGAGACCAAATCGAAGAGAGGAGCAGTAGTGCACAATAGGGCGTCAATCATGGTGTCCCAAATTAGCAAGAAACGAAAGTTTGTCGCTGATGGAGTTTTCTTCGCTGAGATCAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTCAGGGTTACGCCGATGCGTACTCAGATTATAATCAGGGCATCACGAACACAAAATGTTCTAGCTTAG

Protein sequence

MSLSQTLYPSRSLSSRSRALSLASLSQSLSRSRALFQCRSRSCPLSARKLAPSLRLSLAFVGSCFQRGFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVLA

Homology

[Close]

BLAST of Cla97C07G140795 vs. NCBI nr
Match: KAF3508316.1 (hypothetical protein F2Q69_00001453 [Brassica cretica])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-21
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 47  ARKLAPSLRLSLAFVGSCFQRGFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVF 106
           ++ L  +L LS  FV    +R   R F T S++ A   N    M +QISKKRKFVADGVF
Sbjct: 4   SKSLRETLALSYLFVSRPLRRPDSRVF-TLSQQSANFKNHN--MATQISKKRKFVADGVF 63

Query: 107 FAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           +AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 64  YAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 102

[Close]

BLAST of Cla97C07G140795 vs. NCBI nr
Match: EXB38920.1 (40S ribosomal protein S3-3 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 55/62 (88.71%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 87  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQN 146
           A+IM +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQN
Sbjct: 81  AAIMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQN 140

Query: 147 VL 149
           VL
Sbjct: 141 VL 142

[Close]

BLAST of Cla97C07G140795 vs. NCBI nr
Match: CAB4087203.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-20
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 68  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVE 127
           GF  +  +   + +  H   + M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVE
Sbjct: 32  GFRYEISSGCGQSSSPHTLPANMATQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVE 91

Query: 128 VRVTPMRTQIIIRASRTQNVL 149
           VRVTPMRT+IIIRA+RTQNVL
Sbjct: 92  VRVTPMRTEIIIRATRTQNVL 112

[Close]

BLAST of Cla97C07G140795 vs. NCBI nr
Match: KAB1214744.1 (Filament-like plant protein 7 [Morella rubra])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-20
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 70   PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGV 129
            P++   K ++ AV     S+   M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGV
Sbjct: 1096 PKETTEKRRKAAVKLPSKSLESKMATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGV 1155

Query: 130  EVRVTPMRTQIIIRASRTQNVL 149
            EVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1156 EVRVTPMRTEIIIRATRTQNVL 1177

[Close]

BLAST of Cla97C07G140795 vs. NCBI nr
Match: XP_006854617.1 (40S ribosomal protein S3-3 [Amborella trichopoda] >ERN16084.1 hypothetical protein AMTR_s00030p00157370 [Amborella trichopoda])

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           MV+QISKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MVTQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-22
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-22
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-22
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M  QISKKRKFVADG+F AE+NE LTRELAEDGYSGVEVRVTP RT+III A+RTQNVL
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot
Match: P79891 (40S ribosomal protein S3 OS=Ambystoma mexicanum OX=8296 GN=RPS3 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M  QISKKRKFVADG+F AE+NE LTRELAEDGYSGVEVRVTP RT+III A+RTQNVL
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL
Match: A0A803NY91 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 68  GFPRDFETKSKR---GAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYS 127
           GF R  + KS R    A   + +++M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYS
Sbjct: 9   GFARLQQVKSGRTYPSAFSRSISTVMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYS 68

Query: 128 GVEVRVTPMRTQIIIRASRTQNVL 149
           GVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 69  GVEVRVTPMRTEIIIRATRTQNVL 92

[Close]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL
Match: W9QJX2 (40S ribosomal protein S3-3 OS=Morus notabilis OX=981085 GN=L484_027355 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.8e-21
Identity = 55/62 (88.71%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 87  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQN 146
           A+IM +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQN
Sbjct: 81  AAIMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQN 140

Query: 147 VL 149
           VL
Sbjct: 141 VL 142

[Close]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL
Match: A0A6S7MH16 (30S ribosomal protein S3, chloroplastic OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS15332 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 68  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVE 127
           GF  +  +   + +  H   + M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVE
Sbjct: 32  GFRYEISSGCGQSSSPHTLPANMATQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVE 91

Query: 128 VRVTPMRTQIIIRASRTQNVL 149
           VRVTPMRT+IIIRA+RTQNVL
Sbjct: 92  VRVTPMRTEIIIRATRTQNVL 112

[Close]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL
Match: A0A6A1VPG4 (Filament-like plant protein 7 OS=Morella rubra OX=262757 GN=CJ030_MR5G004895 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 70   PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGV 129
            P++   K ++ AV     S+   M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGV
Sbjct: 1096 PKETTEKRRKAAVKLPSKSLESKMATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGV 1155

Query: 130  EVRVTPMRTQIIIRASRTQNVL 149
            EVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1156 EVRVTPMRTEIIIRATRTQNVL 1177

[Close]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL
Match: W1PMI4 (KH type-2 domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00024p00219330 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           MV+QISKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MVTQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-23
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-23
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

[Close]

BLAST of Cla97C07G140795 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-23
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 90  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL 149
           M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 59

The following BLAST results are available for this feature:

BLAST of Cla97C07G140795 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3508316.1	2.5e-21	64.71	hypothetical protein F2Q69_00001453 [Brassica cretica]	[more]
EXB38920.1	1.6e-20	88.71	40S ribosomal protein S3-3 [Morus notabilis]	[more]
CAB4087203.1	2.1e-20	69.14	unnamed protein product [Lactuca saligna]	[more]
KAB1214744.1	2.7e-20	70.73	Filament-like plant protein 7 [Morella rubra]	[more]
XP_006854617.1	3.6e-20	93.22	40S ribosomal protein S3-3 [Amborella trichopoda] >ERN16084.1 hypothetical prote...	[more]

BLAST of Cla97C07G140795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIP7	3.0e-22	89.83	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
Q9M339	3.0e-22	89.83	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9FJA6	3.0e-22	89.83	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
P02350	5.4e-19	83.05	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
P79891	5.4e-19	83.05	40S ribosomal protein S3 OS=Ambystoma mexicanum OX=8296 GN=RPS3 PE=2 SV=1	[more]

BLAST of Cla97C07G140795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803NY91	2.7e-21	71.43	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
W9QJX2	7.8e-21	88.71	40S ribosomal protein S3-3 OS=Morus notabilis OX=981085 GN=L484_027355 PE=3 SV=1	[more]
A0A6S7MH16	1.0e-20	69.14	30S ribosomal protein S3, chloroplastic OS=Lactuca saligna OX=75948 GN=LSAL_LOCU...	[more]
A0A6A1VPG4	1.3e-20	70.73	Filament-like plant protein 7 OS=Morella rubra OX=262757 GN=CJ030_MR5G004895 PE=...	[more]
W1PMI4	1.7e-20	93.22	KH type-2 domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00...	[more]

BLAST of Cla97C07G140795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31610.1	2.2e-23	89.83	Ribosomal protein S3 family protein	[more]
AT3G53870.1	2.2e-23	89.83	Ribosomal protein S3 family protein	[more]
AT5G35530.1	2.2e-23	89.83	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 86..149 e-value: 1.6E-27 score: 97.3
None	No IPR available	PANTHER	PTHR11760:SF49	40S RIBOSOMAL PROTEIN S3-2-LIKE	coord: 90..148
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 90..148
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 99..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G140795.1	Cla97C07G140795.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding