Cla97C07G135730 (gene) Watermelon (97103) v2.5

Overview
NameCla97C07G135730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description30S ribosomal protein S11, chloroplastic
LocationCla97Chr07: 21537205 .. 21537412 (-)
RNA-Seq ExpressionCla97C07G135730
SyntenyCla97C07G135730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGGTTAATTTTCTAGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

mRNA sequence

ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

Coding sequence (CDS)

ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

Protein sequence

MTYNCDCYKRTGSSSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGLEFYH
Homology
[Close]
BLAST of Cla97C07G135730 vs. NCBI nr
Match: QYH50881.1 (ribosomal protein S11 [Saussurea tanguensis])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14 SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
          SS  TCGF+GTRRGT FA QT AENAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 52 SSAGTCGFRGTRRGTPFAAQTAAENAIRAVVDQGMQRAEVMIKGPGL 98

[Close]
BLAST of Cla97C07G135730 vs. NCBI nr
Match: YP_009634717.1 (ribosomal protein S11 [Nyctanthes arbor-tristis] >QBS49769.1 ribosomal protein S11 [Nyctanthes arbor-tristis])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAENAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. NCBI nr
Match: KAD4981935.1 (hypothetical protein E3N88_18606 [Mikania micrantha])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 512 SSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIKGPGL 558

[Close]
BLAST of Cla97C07G135730 vs. NCBI nr
Match: YP_009905930.1 (ribosomal protein S11 [Vasconcellea cundinamarcensis] >QLG90337.1 ribosomal protein S11 [Vasconcellea cundinamarcensis])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTTAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. NCBI nr
Match: YP_009752191.1 (ribosomal protein S11 [Linnaeosicyos amara] >QIT05601.1 ribosomal protein S11 [Linnaeosicyos amara])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAARNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-15
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-15
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match: Q6EW19 (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-15
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match: B2LMM6 (30S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14 SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
          SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 52 SSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGL 98

[Close]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match: A0A5N6NML1 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 512 SSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIKGPGL 558

[Close]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match: A0A4D5Y202 (30S ribosomal protein S11, chloroplastic OS=Nyctanthes arbor-tristis OX=41398 GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAENAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match: A0A7D5QJ83 (30S ribosomal protein S11, chloroplastic OS=Vasconcellea cundinamarcensis OX=35926 GN=rps11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTTAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match: A0A6H0ETH3 (30S ribosomal protein S11, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAARNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match: A0A6M3RIU1 (30S ribosomal protein S11, chloroplastic OS=Euphorbia larica OX=1031526 GN=rps11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QTTA NAIR VVDQGMQRAEVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTTAANAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Cla97C07G135730 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-15
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRAEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQRAEV IKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGL 100

The following BLAST results are available for this feature:
BLAST of Cla97C07G135730 vs. NCBI nr
Match NameE-valueIdentityDescription
QYH50881.11.5e-1287.23ribosomal protein S11 [Saussurea tanguensis][more]
YP_009634717.12.0e-1287.23ribosomal protein S11 [Nyctanthes arbor-tristis] >QBS49769.1 ribosomal protein S... [more]
KAD4981935.12.0e-1287.23hypothetical protein E3N88_18606 [Mikania micrantha][more]
YP_009905930.12.6e-1287.23ribosomal protein S11 [Vasconcellea cundinamarcensis] >QLG90337.1 ribosomal prot... [more]
YP_009752191.12.6e-1287.23ribosomal protein S11 [Linnaeosicyos amara] >QIT05601.1 ribosomal protein S11 [L... [more]
BLAST of Cla97C07G135730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0ZZ685.9e-1587.2330S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q2L9375.9e-1587.2330S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ... [more]
Q6EW195.9e-1587.2330S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3... [more]
B2LMM61.0e-1485.1130S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps11... [more]
B1A9681.3e-1485.1130S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ... [more]
BLAST of Cla97C07G135730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6NML19.7e-1387.23S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 ... [more]
A0A4D5Y2029.7e-1387.2330S ribosomal protein S11, chloroplastic OS=Nyctanthes arbor-tristis OX=41398 GN... [more]
A0A7D5QJ831.3e-1287.2330S ribosomal protein S11, chloroplastic OS=Vasconcellea cundinamarcensis OX=359... [more]
A0A6H0ETH31.3e-1287.2330S ribosomal protein S11, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps... [more]
A0A6M3RIU11.3e-1287.2330S ribosomal protein S11, chloroplastic OS=Euphorbia larica OX=1031526 GN=rps11... [more]
BLAST of Cla97C07G135730 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00750.14.6e-1582.98ribosomal protein S11 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 11..59
e-value: 1.9E-11
score: 44.3
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 14..60
IPR036967Ribosomal protein S11 superfamilyGENE3D3.30.420.80Ribosomal protein S11coord: 6..61
e-value: 8.4E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR11759:SF4930S RIBOSOMAL PROTEIN S11, CHLOROPLASTICcoord: 14..60
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 13..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G135730.1Cla97C07G135730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006413 translational initiation
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003743 translation initiation factor activity