Cla97C07G134635 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C07G134635
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Cla97Chr07: 13836742 .. 13838582 (+)
RNA-Seq Expression	Cla97C07G134635
Synteny	Cla97C07G134635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATTTCGATACATGCAACTCTAAAGCTATTGGCCAAGCTATGGAGGATGGACAAAATTCAAAGGTATACCTATCATGCTTGGAATATGAACACTTTTAAACAAATTAGAGATGCTTGTGATGAATTGATAACTTGTAGAAATACAAGTTATTATTGTCTCTCGCTTAGGAAAATAGAGCTTAAATAGAGAATCATGCGGCAGTTAATGTTAAATTCTATTGATAAATCTTCCTATGCGTTCTACTCTTGTAAATTGATGAAGATACATGTTTTGAAACTTTTTGAGCCTAAAACGCATGCTTTGATGCAGAAAAGCAAGTAACCTGTGGATGCGTTGGCAACCCTTCAACGCAGGTTGATGCGTTACATCCCATGGATGCGTAACGCATGAACCCAAAGTTATCCATGGACGCATATCAACCAGAAACGCAAGGCAGCAGAGAATCAAATAAGAATCTTGAGAGATTGTTGGGAGATTGATATGCTTGATATGCGGCGAGAGTGGTGGATCGAAATTAAACTGGAAATCACGCTATTAGGCGAGATGGACACAAGGCAGAAATTCAGCCTCCAGTCATGCAGATTTACCAGTGATTGCAACGCAACATCTCTAAAAGGGCAGACCTGAAGACGAAATGTGGTTAAACCTCTCGAAAGAATTCCTAAGTGACAATAGAGTTCTCTCCAAATGACAACCAGAGACAAATAGCTCGAAAGAGAAGAGTCTTCCCTCCATCTGACCACTTCACAGCAGAACTCACGCTACCATCTCGCGAGCTCAAGACATTGAGAAGCCATTCCATGCTTTCTATCTCTTTTCTTACTTATGTTTTAGTCTGTTAGCAAGGAATTGTATTTTCTAAAACAATTATTCCGTTCATCAATCTATACATCTTCCATGGCTATTCATTTCTCATCACTTTCCATTTGCTTTTTATCATCCATGAGTAACTAACTCTATCAAGGGTCACGGATTGCGTTATCATCTAAATAAGAACCCTAGAAGACTATTTCATCTTGTCAAATGTATTTTTAATCAAATGCTTATGTCCATCTAGCTAATCAATATAAGTAGTAATAATCAGACTGCTCGGGAGAGTAAGTGATTGTGGAACTCAGTTGACAAGGCTAAGAAGTGTTACCTAGTAGGAATAACCTTGGCACTTAACACCCTCCTAACCGGGAGAAGAGTCAATGGTATGAAATAGACCCAACTATGCATTTCCGACTTTAGATGATAACCAACTCCAACTCTACGTTACCATTCATATAACTTAATTAGCTGTTTTTGCTGTGTTGCACCTCTCCATCAAACCACTCTAGCTTAGTTTTATTGCTTTTTATTTAGTTAAACGCATCACTTCGCATCACCTTCTTTAGACGCATAACTTAAATAATCTGACTAATTATAGAATCTGCATAGTCCCTATGTTCGGCCTCGGACTCACTAAGAAAACCTCATTCTTTGCTTATACTTGGGTAAAGAATAGGGAAACTTGACAGATTAGTAACGCATAGTATTAAGCATGTTGAACGCATAGTCAACTTAATAAAGAATCGCAATAAGATTTGCAACACGAATACTTAGAAGTTTCCAAATAAGCTTAGAAAAATCCAACATTATTGAGGCCAAAATCAAGATAAAAAACAACTACAATGGGCTCATTTCAATGACAATTTACATTAGTGATAAAAAGGGGAATAATAGATTCTTGGTTCAAATAGTCACAATGTCGGAAGGAAGATGGTTGGTTGAAAGAAACTCTAAGAGACACAGTACTTTTTCCAAAAAAGTAGCCATGGACTACGATGAATATGACACTGAAATGAAATAA

mRNA sequence

ATGGATGATTTCGATACATGCAACTCTAAAGCTATTGGCCAAGCTATGGAGGATGGACAAAATTCAAAGATAAAAAACAACTACAATGGGCTCATTTCAATGACAATTTACATTAGTGATAAAAAGGGGAATAATAGATTCTTGGTTCAAATAGTCACAATGTCGGAAGGAAGATGGTTGGTTGAAAGAAACTCTAAGAGACACAGTACTTTTTCCAAAAAAGTAGCCATGGACTACGATGAATATGACACTGAAATGAAATAA

Coding sequence (CDS)

ATGGATGATTTCGATACATGCAACTCTAAAGCTATTGGCCAAGCTATGGAGGATGGACAAAATTCAAAGATAAAAAACAACTACAATGGGCTCATTTCAATGACAATTTACATTAGTGATAAAAAGGGGAATAATAGATTCTTGGTTCAAATAGTCACAATGTCGGAAGGAAGATGGTTGGTTGAAAGAAACTCTAAGAGACACAGTACTTTTTCCAAAAAAGTAGCCATGGACTACGATGAATATGACACTGAAATGAAATAA

Protein sequence

MDDFDTCNSKAIGQAMEDGQNSKIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEYDTEMK

Homology

[Close]

BLAST of Cla97C07G134635 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN K H TF ++ A  +D++
Sbjct: 260 KIRYNYSGFLPANVKIFDQEG-NKFIVQVVTHSEGKWLMERNVKLHGTFKRQAAASFDDF 319

Query: 83  DTE 86
           + E
Sbjct: 320 NPE 321

[Close]

BLAST of Cla97C07G134635 vs. NCBI nr
Match: KAA0034016.1 (hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ++T SEG+WL+ERN + H TF ++ A  +DE+
Sbjct: 339 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVITHSEGKWLMERNVRLHGTFKRQAAASFDEF 398

Query: 83  DTE 86
           + +
Sbjct: 399 NPD 400

[Close]

BLAST of Cla97C07G134635 vs. NCBI nr
Match: KAA0039309.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN + H TF ++ A  +D++
Sbjct: 336 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVVTHSEGKWLMERNVRLHGTFKRQAAASFDDF 395

Query: 83  DTE 86
           + +
Sbjct: 396 NPD 397

[Close]

BLAST of Cla97C07G134635 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN + H TF ++ A  +D++
Sbjct: 336 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVVTHSEGKWLMERNVRLHGTFKRQAAASFDDF 395

Query: 83  DTE 86
           + +
Sbjct: 396 NPD 397

[Close]

BLAST of Cla97C07G134635 vs. NCBI nr
Match: KAA0058103.1 (hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN + H TF ++ A  +D++
Sbjct: 277 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVVTHSEGKWLMERNVRLHGTFKRQAAASFDDF 336

Query: 83  DTE 86
           + +
Sbjct: 337 NPD 338

[Close]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.8e-08
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN K H TF ++ A  +D++
Sbjct: 260 KIRYNYSGFLPANVKIFDQEG-NKFIVQVVTHSEGKWLMERNVKLHGTFKRQAAASFDDF 319

Query: 83  DTE 86
           + E
Sbjct: 320 NPE 321

[Close]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL
Match: A0A5A7SVM5 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00850 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ++T SEG+WL+ERN + H TF ++ A  +DE+
Sbjct: 339 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVITHSEGKWLMERNVRLHGTFKRQAAASFDEF 398

Query: 83  DTE 86
           + +
Sbjct: 399 NPD 400

[Close]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL
Match: A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN + H TF ++ A  +D++
Sbjct: 336 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVVTHSEGKWLMERNVRLHGTFKRQAAASFDDF 395

Query: 83  DTE 86
           + +
Sbjct: 396 NPD 397

[Close]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL
Match: A0A5D3C5P2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002030 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 23 KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
          K++ NY+G +   + I D +G N+F VQ+VT  EG+WL+ERN K H TF ++ A  +D++
Sbjct: 36 KVRYNYSGFLPANVRIFDNEG-NKFSVQVVTHPEGKWLIERNVKLHGTFKRQAAASFDDF 95

Query: 83 DTE 86
          + E
Sbjct: 96 NPE 97

[Close]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL
Match: A0A5A7UQG0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004110 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 23  KIKNNYNGLISMTIYISDKKGNNRFLVQIVTMSEGRWLVERNSKRHSTFSKKVAMDYDEY 82
           KI+ NY+G +   + I D++G N+F+VQ+VT SEG+WL+ERN + H TF ++ A  +D++
Sbjct: 277 KIRYNYSGFLPAYVKIFDQEG-NKFVVQVVTHSEGKWLMERNVRLHGTFKRQAAASFDDF 336

Query: 83  DTE 86
           + +
Sbjct: 337 NPD 338

The following BLAST results are available for this feature:

BLAST of Cla97C07G134635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045262.1	2.0e-07	46.03	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]
KAA0034016.1	1.3e-06	42.86	hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa]	[more]
KAA0039309.1	2.2e-06	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK00493.1	2.2e-06	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0058103.1	2.2e-06	42.86	hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C07G134635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ07	9.8e-08	46.03	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7SVM5	6.4e-07	42.86	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TDG1	1.1e-06	42.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C5P2	1.1e-06	42.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UQG0	1.1e-06	42.86	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cla97C07G134635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G134635.1	Cla97C07G134635.1	mRNA