Cla97C07G134560 (gene) Watermelon (97103) v2.5

Overview
NameCla97C07G134560
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA topoisomerase (ATP-hydrolyzing)
LocationCla97Chr07: 13359734 .. 13362148 (+)
RNA-Seq ExpressionCla97C07G134560
SyntenyCla97C07G134560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTTTTTTCTTGGACTGCCGGTGATCTAGTCACATAAGAATTTCTTGCAAAGTTTAGTGAGTTTCCAACATTCTCAAGAAAGACCCACTTCGGACTTAAGAAGGATCCTTCTATTTCTTCATCTTTCATAACTTGATTTAAACGAACTAAATCAATTGGGTTGGAAAAGCCTTTAACGAACAGGATGCCCTTAACAAACTTCAGAGGATCCAAAATTTCTATATCACCATAATTAAAAAAGATGTTACCTCGGTTCTCATCAGTAATTTTATAATAGCAGGCATGAAACCACATAAATTCTTTTTAACTTGAACTTTGGCTTCTGCTACATTGAAAAGATTAGATGTTTCGTTTGAGATTGATTCCAGCCCTCCATAGTACGCCTTACGGCTTCAAACGTCTTCCTACACCAGTAATCCAATGGAAGGTCCTTAATTGAGATCCAACCTCCATAACCTTTCATCAAACTTGGACGATTGTGTGTGAATTTGTCCCATCTTTCAAACTTCAAATGGAAATTACCATATTCATGCCATTTATTTGGCTGGATAATTAAATCTTCAAAGTTCTCTTGATCTACTTTTATTAAGGCATTCTCTGCGAATAATCACATCATATTTGAAATAAGACTTTAACATGCTTGCAATCTCAGTCCAATCATTGAACTCAAAAAGCCTTAATACTATCCAAAAGATTGCCACCCCTGAGTTGAGTCTCCTGTTGGGACGTGGATGAAACACCTATACCCCTAAAGAGGGCCATACTACACATCTCATTAACCAACCATATGATGTGTATAGTTTAGACAACTTTGTTGTGCCATACCCATCTCTACTCTTTCTTTCATAAAAACTCGATAATGAGCTCTTGGAAAAATCCAATATATTTTCCATAAACTAAATAACTTGCGTCTTTGAGAGGACTATCTTTTTTCTGGCTTCCACATGTTCAATAAAAATTTACTAGATTCAAACCATATACAAAAATGAGCTTCATTCACTAAACAACTTTTTACTTCCATGGCTTTCTCTGTTAGACCTTCGAGCTTAGTAAGAAGCTCGATGAGACGACAAACGATGATGTTGACTGGAAGAGCAAGACTCGGCGGATGATGTTATTGGATGGAGGGACGACAAAAAGGAAGACGAGAGAGGAGAAAGGAGAGAGCATGCTTACCTTAGTTTGACATTGCAAGGCAGTGGATTATTAGATTGAATTTCACTATTCAAGAAGAAATTTGTATTAATGAAATGGAAGCAATTAAGAAGTGGAAAGAAATACAAATTGGAAAGGAGGTCTCTATCTTTGATCACTTGCCCCATTGCTAGCGCTCCGTGGTCTCTTTTCTACAATGTTTTGGTTGGCAATGACCCCTCCCCACAACATTTACAGTACTCTCTCTTCTTTGAAGATCTTGAGGTTGCACGTTCAAATCTTCAGGAAAACCCTTGATGACCAATGAATTTGACTTGACAAGTTGAGATGCATCCCCTAGGTTGAGACAAAGCAACCTTAATAAGGCATGTATCTAGTTTTTCATGATTTGAGATTCGAGTAGAACGAATGTAGGCTTGGAGACACCTTAACAGAACAAGATGGCAAACCAAAGTTGGGGTCATTTGACCAAGTCCATGATGATTGTCGAACTTAAATTTTTTTTAATTAAGTTCTTGCTTTGTTTTTTCCCCTCTCTATACAAGTCATTCTAGTTCTTTGGGCTTTTACTGCTAAATGGTTGCTGATCACTTTTTTACTTTCCTTCATATTTTTGAAGGAACCAAAAATTTCATTGATCAAAGGAGACCTATCCTTCATTATTATAATTTTTGTCACTTCTATTCATAGTTTTAGTTCTAATTCTCATAGTCTCATGCTTTTTATAGGATTTCTCTTTAAGGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAGTACGTTTAAATATGTTTGCTTTTTTAGAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGTATAAAGAAAATCATCATAGAAAGTAGAGTAGTTGTCTTACGATTAAAAGCCATTTTTTTTTTTTTCTTGAGTTTTTTCCCACATTTTGTTCAAACTTCTGTAATTTCTGAAAACCGTCAATCTTTTTGTCATAATTGTTGTATAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

mRNA sequence

GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

Coding sequence (CDS)

GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

Protein sequence

ESSWCVLPTAADLLMPTESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERIQLFEDMKNRFVRPQLPTFPKQIKLNPLFVTGKDQKCLIGHKAYVFACWHVGLN
Homology
[Close]
BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587485.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X4 [Phalaenopsis equestris])

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 13 LLMPTESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
          +L+P  SF   + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 28 ILVPIVSFQ--AKNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 74

[Close]
BLAST of Cla97C07G134560 vs. NCBI nr
Match: CBI29134.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-10
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERIQLF 65
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE I+LF
Sbjct: 78  RCPLIQGHGNFGSVDADPPAAMRYTECRLEVIRLF 112

[Close]
BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587482.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

[Close]
BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587483.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

[Close]
BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587484.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X3 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

[Close]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match: Q9CAF6 (DNA gyrase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GYRA PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLE 60
           +CPLIQGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 192 RCPLIQGHGNFGSIDADPPAAMRYTECRLD 221

[Close]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match: Q5YLB5 (DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana OX=4100 GN=GYRA PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           + PLI+GHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 181 RSPLIRGHGNFGSIDADPPAAMRYTECRLEAL 212

[Close]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match: Q7XZF7 (Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GYRA PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 32  PLIQGHGNFGSIDADPPAAMRYTECRLE 60
           PL+QGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 175 PLVQGHGNFGSIDADPPAAMRYTECRLD 202

[Close]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match: O33926 (DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=gyrA PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 28  TSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI--QLFEDMKNRFV 73
           T + PLI+G GNFGSID DPPAAMRYTE RL R+  ++ ED++   V
Sbjct: 94  TMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLEDIEKNTV 140

[Close]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match: C5CHA8 (DNA gyrase subunit A OS=Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1) OX=521045 GN=gyrA PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-08
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 32  PLIQGHGNFGSIDADPPAAMRYTECRLERI--QLFEDMKNRFVRPQLPTF 80
           PLIQG GNFGSID DPPAAMRYTE R++R+  +L  D+    V+  +P F
Sbjct: 98  PLIQGQGNFGSIDRDPPAAMRYTEARMQRLAEELLADIDKNTVK-MIPNF 146

[Close]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match: A0A6P5MU28 (DNA topoisomerase (ATP-hydrolyzing) OS=Arachis duranensis OX=130453 GN=LOC107471854 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 12 DLLMPTESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
          ++L+    F V  ++ + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 10 NILLLRVLFSVSILDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEEL 59

[Close]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match: A0A6J1K6F5 (DNA topoisomerase (ATP-hydrolyzing) OS=Cucurbita maxima OX=3661 GN=LOC111492096 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 179 RCPLIQGHGNFGSIDADPPAAMRYTECRLEAL 210

[Close]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match: A0A059A928 (DNA topoisomerase (ATP-hydrolyzing) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00313 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 199 RCPLIQGHGNFGSIDADPPAAMRYTECRLEAL 230

[Close]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match: W1NNI3 (DNA topoisomerase (ATP-hydrolyzing) OS=Amborella trichopoda OX=13333 GN=AMTR_s00119p00135690 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 216 RCPLIQGHGNFGSIDADPPAAMRYTECRLEAL 247

[Close]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match: A0A445B1K5 (DNA topoisomerase (ATP-hydrolyzing) OS=Arachis hypogaea OX=3818 GN=Ahy_A10g047099 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 192 RCPLIQGHGNFGSVDADPPAAMRYTECRLEEL 223

[Close]
BLAST of Cla97C07G134560 vs. TAIR 10
Match: AT3G10690.1 (DNA GYRASE A )

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-12
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLE 60
           +CPLIQGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 192 RCPLIQGHGNFGSIDADPPAAMRYTECRLD 221

The following BLAST results are available for this feature:
BLAST of Cla97C07G134560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020587485.19.8e-1067.35DNA gyrase subunit A, chloroplastic/mitochondrial isoform X4 [Phalaenopsis eques... [more]
CBI29134.39.8e-1088.57unnamed protein product, partial [Vitis vinifera][more]
XP_020587482.12.8e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 [Phalaenopsis eques... [more]
XP_020587483.12.8e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Phalaenopsis eques... [more]
XP_020587484.12.8e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X3 [Phalaenopsis eques... [more]
BLAST of Cla97C07G134560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CAF67.0e-1193.33DNA gyrase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q5YLB57.8e-1084.38DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana OX=41... [more]
Q7XZF71.7e-0992.86Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp... [more]
O339261.9e-0859.57DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM ... [more]
C5CHA83.3e-0858.00DNA gyrase subunit A OS=Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TB... [more]
BLAST of Cla97C07G134560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P5MU281.8e-0962.00DNA topoisomerase (ATP-hydrolyzing) OS=Arachis duranensis OX=130453 GN=LOC107471... [more]
A0A6J1K6F56.8e-0990.63DNA topoisomerase (ATP-hydrolyzing) OS=Cucurbita maxima OX=3661 GN=LOC111492096 ... [more]
A0A059A9286.8e-0990.63DNA topoisomerase (ATP-hydrolyzing) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J0... [more]
W1NNI36.8e-0990.63DNA topoisomerase (ATP-hydrolyzing) OS=Amborella trichopoda OX=13333 GN=AMTR_s00... [more]
A0A445B1K56.8e-0987.50DNA topoisomerase (ATP-hydrolyzing) OS=Arachis hypogaea OX=3818 GN=Ahy_A10g04709... [more]
BLAST of Cla97C07G134560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10690.15.0e-1293.33DNA GYRASE A [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013758DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-betaGENE3D3.90.199.10Topoisomerase II, domain 5coord: 29..72
e-value: 1.7E-13
score: 51.9
IPR002205DNA topoisomerase, type IIA, subunit A/C-terminalPFAMPF00521DNA_topoisoIVcoord: 29..69
e-value: 5.6E-10
score: 38.7
NoneNo IPR availablePANTHERPTHR43493DNA GYRASE/TOPOISOMERASE SUBUNIT Acoord: 29..69
IPR013760DNA topoisomerase, type IIA-like domain superfamilySUPERFAMILY56719Type II DNA topoisomerasecoord: 29..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G134560.1Cla97C07G134560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006265 DNA topological change
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity