Cla97C07G130320 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C07G130320
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	AvrRpt-cleavage domain-containing protein
Location	Cla97Chr07: 2021154 .. 2022069 (+)
RNA-Seq Expression	Cla97C07G130320
Synteny	Cla97C07G130320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGTGCGTCTCAGCTGTAGATAATGATAACAAATGATTTAGAGGCAGCTCAAAGCAATTACAAATTCTTGTTTCATATTGTCTACTTTACTTTGAATTTAAGGCCTTAAAAACATTTTTTCAAATATGTTTGGCACACTGAGTGAGTTTTGAAGTTTGGAATTAATATGTTGGAGTTAAGAAGTTAGTGTTTGGGGTGTAGAGTTCTAAGATGGAGTTCCTCGACAAATGTATAAAGGGGAGAAAGAGGCAAAGATGGAGTTTTTCGATAAATATGCAAAATTCAATAGTGAACAATATTGAAGGCGAGTTATTTAACGTTGACTTATCAAGTTGGTGGGTCAAATACCCTCTTAAGATGTAATTTCGAACAGTTCCTATGACAGTATAGATTTTAATTTGCTACTGAAATCTTCCAAAAGGCGTTGTTATCATTACATATGTCTGATCCCTATGAATCTATAGCTTTCTTTATTTCTAATTGATATGGAAATGCAATGGTTGCAAATGAAAGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

mRNA sequence

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

Coding sequence (CDS)

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

Protein sequence

MHLEDIDSSKYCLEDFKFVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMKSFLPFLNQPQEIIVILISIVLRCCLPSKLFRNAVVSHGQENDIVLHLHKHS

Homology

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: XP_038888923.1 (RPM1-interacting protein 4-like [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 3.9e-18
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPG-RARTSSRSIDNSTNNQNHEQN 79
          DNEA +PKFGEWDDRDAKAP+NYTAIF  VREGRQ+PG RA T  RSI+NSTNNQNHE N
Sbjct: 3  DNEATVPKFGEWDDRDAKAPENYTAIFKKVREGRQEPGIRALTPPRSINNSTNNQNHEHN 62

Query: 80 QK 81
          QK
Sbjct: 63 QK 64

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: KAG7036250.1 (hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
          D E A+PKFGEW+DRDA  PDNYTAIF  VRE RQD G    +     N  +NQN EQNQ
Sbjct: 3  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQ 62

Query: 80 KVMKS 85
          KV  S
Sbjct: 63 KVCSS 67

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: KAG6606311.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
          D E A+PKFGEW+DRDA  PDNYTAIF  VRE RQD G    +     N  +NQN EQNQ
Sbjct: 3  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQ 62

Query: 80 K 81
          K
Sbjct: 63 K 63

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: XP_030472812.1 (RPM1-interacting protein 4-like [Syzygium oleosum])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 18  FVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRART 62
           FVD  AA+PKFGEWD+ D  + D YT IFN VRE RQ  G ART
Sbjct: 187 FVDKGAAVPKFGEWDENDPASADGYTHIFNKVREERQ--GGART 228

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: KAG5586585.1 (hypothetical protein H5410_047019 [Solanum commersonii])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +   I N+T   N E+ Q
Sbjct: 191 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQ--GNPSGTPSRISNNTQKHNSEEKQ 250

Query: 80  KV 82
            V
Sbjct: 251 MV 250

[Close]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL
Match: A0A0A0L950 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.7e-14
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
          DNE A+PKFGEWDD DAKAP+NYTAIFN VRE RQD     T +R ID STN+QNHEQNQ
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLID-STNSQNHEQNQ 62

Query: 80 KV 82
          K+
Sbjct: 63 KL 63

[Close]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL
Match: M1CPC9 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 191 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 250

Query: 80  KVMK 84
           K MK
Sbjct: 251 KQMK 250

[Close]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL
Match: M1CPD0 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 190 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 249

Query: 80  KVMK 84
           K MK
Sbjct: 250 KQMK 249

[Close]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL
Match: M1CPD2 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q
Sbjct: 154 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQ--GNPSGTPSRASNNTQKHNSEEKQ 213

Query: 80  KV 82
            V
Sbjct: 214 MV 213

[Close]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL
Match: M1CPC8 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q
Sbjct: 191 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQ--GNPSGTPSRASNNTQKHNSEEKQ 250

Query: 80  KV 82
            V
Sbjct: 251 MV 250

The following BLAST results are available for this feature:

BLAST of Cla97C07G130320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888923.1	3.9e-18	80.65	RPM1-interacting protein 4-like [Benincasa hispida]	[more]
KAG7036250.1	1.8e-10	60.00	hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6606311.1	1.1e-09	60.66	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_030472812.1	2.5e-04	63.64	RPM1-interacting protein 4-like [Syzygium oleosum]	[more]
KAG5586585.1	2.5e-04	46.77	hypothetical protein H5410_047019 [Solanum commersonii]	[more]

BLAST of Cla97C07G130320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L950	3.7e-14	72.58	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G63...	[more]
M1CPC9	1.6e-04	48.44	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
M1CPD0	1.6e-04	48.44	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
M1CPD2	4.6e-04	45.16	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
M1CPC8	4.6e-04	45.16	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]

BLAST of Cla97C07G130320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 21..54 e-value: 6.8E-13 score: 47.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77
None	No IPR available	PANTHER	PTHR33159:SF26	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 20..106
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 20..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G130320.1	Cla97C07G130320.1	mRNA