Cla97C06G128255 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G128255
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Cla97Chr06: 29484372 .. 29485663 (-)
RNA-Seq Expression	Cla97C06G128255
Synteny	Cla97C06G128255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTAGGAGGAAATCCGAAAGCTGCTAGTTTTTGGCAACCGATAATTGAGAAGATTGATAAGAAATTCGATGCTTGGAAATACTCATATATTTCAAAAGGTGGACGATTAACATTATTGCAAGCAGTTCTGAGTAACCTCCCAACATATTATCTTTCTCTGTTTCAGGCCCCAACTGTTGTTTGCAAAACCATTGAGAGATTAATGAGAGATTTCCTTTGGGAGGGGACTGAGAAAAGTGGTGCTTCACATCTTGTACGTTGGGATATTACCACTTCGCCAAAGCACATCGGTGGTTTAGGTATCGAACTACCAATTTGGCTTTGTTAAGCAAATGGCTTTGGAGATATCAAACAGAAGCTGTGAGTCTATGGAGATCCTTAATTATTGCAAAATATAAAGCGGCCTCTCCAAACCATTTCCCTTGTATCAGCAATCACCATAGCTGCAAATCTCCTTGGCATAGCATTGTTAAGCTTCATCACTACATTTCTGAAAATATTGAATGGCGTATTGTTGATGGTAGGAACACTCTCTTCTGGTTCACGAATTGGAATAGCAGGGGATGTCTCAATGTCTCCGTCCCTAGATTCTTCGCCTTGACATCCAATCCAAATCTATCAGTTTTCGAAGCTTAGGACCTAGAAAGTCAGTGCTGGGACTTGCAACCCCGCAGACCATTGATGCAAAGAGAAAAGGACCTATGGAGTGCAACAACAGCAGGCTGGCCACAACCATCTTTCGACTTGAATGGTGATACAATAAGATGGAAGCTGACAACTGATGGTACCTTCACTGTCAAATCCATAAAAGACTGCATTAGACCCCCCTCCCCTCAAAACTACTTGAGCAAATTTGTGGGAAATCTCTGGTCATCTCTCATCCCAAAAAAATGCAAATTCTTTCTTTGGAGCATCTTACACAATGGCATTAATACTATGGATAAATATCAAAAAAGGAACCCCTCTCTCTATCTTAATCCAAACTGGTGTGTGCTGTGCAGGAACAGTTCAGAATCTGCTGAACATATCTTTATGACTTGTAGTTTTTCCTCTGTTTTTTGGGACCAATTGCAGCAGGAAGGCATTACTCTTCATACTCAAACAATTCAAGCTAGCCTTGACTTCATATTCCGACAAACAACGACCAACAAACCCCAAATCCTCAACAGCAACCTGATAGCAGCTACTCTATGGAGCATTTGGCTTGAACTTAATAGAACTTTCCAAGGAAGTTGCGAAAATCAGAACTATCTTTGGGCTGATATTCTATCCCTGGCTGCTCTTTAG

mRNA sequence

ATGCCCCTAGGAGGAAATCCGAAAGCTGCTAGTTTTTGGCAACCGATAATTGAGAAGATTGATAAGAAATTCGATGCTTGGAAATACTCATATATTTCAAAAGGTGGACGATTAACATTATTGCAAGCAGTTCTGAGTAACCTCCCAACATATTATCTTTCTCTGTTTCAGGCCCCAACTGTTGTTTGCAAAACCATTGAGAGATTAATGAGAGATTTCCTTTGGGAGGGGACTGAGAAAAGTGGTGCTTCACATCTTGTACGTTGGGATATTACCACTTCGCCAAAGCACATCGGTGGTTTAGCAATCACCATAGCTGCAAATCTCCTTGGCATAGCATTGTTAAGCTTCATCACTACATTTCTGAAAATATTGAATGGCGTATTGTTGATGGTAGGAACACTCTCTTCTGGTTCACGAATTGGAATAGCAGGGGATGTCTCAATACCATTGATGCAAAGAGAAAAGGACCTATGGAGTGCAACAACAGCAGGCTGGCCACAACCATCTTTCGACTTGAATGGTGATACAATAAGATGGAAGCTGACAACTGATGGTACCTTCACTGTCAAATCCATAAAAGACTGCATTAGACCCCCCTCCCCTCAAAACTACTTGAGCAAATTTGTGGGAAATCTCTGGAACAGTTCAGAATCTGCTGAACATATCTTTATGACTTGTAGTTTTTCCTCTGTTTTTTGGGACCAATTGCAGCAGGAAGGCATTACTCTTCATACTCAAACAATTCAAGCTAGCCTTGACTTCATATTCCGACAAACAACGACCAACAAACCCCAAATCCTCAACAGCAACCTGATAGCAGCTACTCTATGGAGCATTTGGCTTGAACTTAATAGAACTTTCCAAGGAAGTTGCGAAAATCAGAACTATCTTTGGGCTGATATTCTATCCCTGGCTGCTCTTTAG

Coding sequence (CDS)

ATGCCCCTAGGAGGAAATCCGAAAGCTGCTAGTTTTTGGCAACCGATAATTGAGAAGATTGATAAGAAATTCGATGCTTGGAAATACTCATATATTTCAAAAGGTGGACGATTAACATTATTGCAAGCAGTTCTGAGTAACCTCCCAACATATTATCTTTCTCTGTTTCAGGCCCCAACTGTTGTTTGCAAAACCATTGAGAGATTAATGAGAGATTTCCTTTGGGAGGGGACTGAGAAAAGTGGTGCTTCACATCTTGTACGTTGGGATATTACCACTTCGCCAAAGCACATCGGTGGTTTAGCAATCACCATAGCTGCAAATCTCCTTGGCATAGCATTGTTAAGCTTCATCACTACATTTCTGAAAATATTGAATGGCGTATTGTTGATGGTAGGAACACTCTCTTCTGGTTCACGAATTGGAATAGCAGGGGATGTCTCAATACCATTGATGCAAAGAGAAAAGGACCTATGGAGTGCAACAACAGCAGGCTGGCCACAACCATCTTTCGACTTGAATGGTGATACAATAAGATGGAAGCTGACAACTGATGGTACCTTCACTGTCAAATCCATAAAAGACTGCATTAGACCCCCCTCCCCTCAAAACTACTTGAGCAAATTTGTGGGAAATCTCTGGAACAGTTCAGAATCTGCTGAACATATCTTTATGACTTGTAGTTTTTCCTCTGTTTTTTGGGACCAATTGCAGCAGGAAGGCATTACTCTTCATACTCAAACAATTCAAGCTAGCCTTGACTTCATATTCCGACAAACAACGACCAACAAACCCCAAATCCTCAACAGCAACCTGATAGCAGCTACTCTATGGAGCATTTGGCTTGAACTTAATAGAACTTTCCAAGGAAGTTGCGAAAATCAGAACTATCTTTGGGCTGATATTCTATCCCTGGCTGCTCTTTAG

Protein sequence

MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPTVVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAANLLGIALLSFITTFLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNGDTIRWKLTTDGTFTVKSIKDCIRPPSPQNYLSKFVGNLWNSSESAEHIFMTCSFSSVFWDQLQQEGITLHTQTIQASLDFIFRQTTTNKPQILNSNLIAATLWSIWLELNRTFQGSCENQNYLWADILSLAAL

Homology

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BLAST of Cla97C06G128255 vs. NCBI nr
Match: RVW94236.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-33
Identity = 116/340 (34.12%), Postives = 157/340 (46.18%), Query Frame = 0


Query: 1    MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
            +PLGGNPKA  FW P++E+I  + D W+ +Y+S GGR+TL+Q+ L++LP+Y+LSLF+ P 
Sbjct: 1105 LPLGGNPKACGFWDPVVERISSRLDGWQKAYLSFGGRITLIQSCLTHLPSYFLSLFKIPA 1164

Query: 61   VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAA----NLLGIALLS 120
             V   IERL RDFLW G  +    HLVRWD+   PK IGGL +   +     LLG  L S
Sbjct: 1165 SVAAKIERLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGLGNISWRNLALLGKWLWS 1224

Query: 121  FITTFLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPS--FDLN 180
             + T L  L G    +   S  +R  +       L      LW+         S   DL 
Sbjct: 1225 QMVTSLS-LEGYCSSLSGFSLITRYVVGNGEEFVLGPSRPFLWNLNFRRNLSDSEIEDLE 1284

Query: 181  G---------------DTIRWKLTTDGTFTVKSIKDCIRPP--SPQNYLSKFVGNLWNSS 240
            G               D   W L++ G F+VKS    +     S QN+ SKFV   WNS 
Sbjct: 1285 GLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQSSGSSQNFPSKFV---WNSQ 1344

Query: 241  ESAEHIFMTCS------FSSVFWDQ--LQQEGITLHTQTIQASLDFIFRQTTTNKPQILN 300
               +     C+      FSS+F D   + Q GI L      AS+                
Sbjct: 1345 VPFKVKSFVCTGNQQIIFSSLFLDDWVVAQRGIVLWQ---AASI---------------- 1404

Query: 301  SNLIAATLWSIWLELN-RTFQGSCENQNYLWADILSLAAL 309
                 A +  +W E N R F+    N  +LW  I+ LA+L
Sbjct: 1405 -----ALIRVVWWERNARIFEDKARNSEFLWDSIVFLASL 1416

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BLAST of Cla97C06G128255 vs. NCBI nr
Match: CAN81137.1 (hypothetical protein VITISV_018758 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 6.0e-30
Identity = 105/329 (31.91%), Postives = 158/329 (48.02%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           +PLGGNPK   FW P+IE+I  + D W+  Y+S GGR+TL+Q+ L+++P Y+LSLF+ P 
Sbjct: 214 LPLGGNPKXCXFWDPVIERISSRLDGWQKXYLSFGGRITLIQSCLTHMPCYFLSLFKIPA 273

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAA--NL--LGIALLS 120
            V   IERL RDFLW G  +    HLVRWD+   PK IGGL     +  NL  LG  L  
Sbjct: 274 SVAAKIERLQRDFLWXGIGEXKRDHLVRWDVVCKPKAIGGLGFGNISWRNLAFLGKWLWR 333

Query: 121 FITTFLKILNGVLLMV-GTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNG 180
           +      + + V+L + G+ S+G       D +  +    +  W A    +P      + 
Sbjct: 334 YXREGSXLWHQVILSIYGSHSNG------WDANTLVRWSHRCPWKAIAQVFPGVFLVYSD 393

Query: 181 DTIRWKLTTDGTFTVKSI-----------KDCIRPPSPQNYLSKFVGNL-WNSSESAEHI 240
              ++   +   F VKS             D ++   P   LS  +  L     ESA+H+
Sbjct: 394 FPSKFVWNSQVXFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSLDICILCMKHGESADHL 453

Query: 241 FMTCSFSSVFWDQLQQ--EGITLHTQTIQASLDFIFRQTTTNKPQI-LNSNLIAATLWSI 300
           F+ CS +   W ++ Q  +   +   +I   +   F+   T+K  I L      A +  +
Sbjct: 454 FLHCSLTIGLWHRVFQLAKMDWVPPMSISDMMSIKFKGFGTSKRGIVLWQAANIALIRVV 513

Query: 301 WLELN-RTFQGSCENQNYLWADILSLAAL 309
           W E N R F+    N  +LW  I+ LA+L
Sbjct: 514 WWERNARIFEDKTRNSEFLWDSIVFLASL 536

[Close]

BLAST of Cla97C06G128255 vs. NCBI nr
Match: XP_022143310.1 (uncharacterized protein LOC111013210 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-29
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           MPLGGNPKA+ FW PIIE+  +K ++WKYS ISK GRLTL+Q++LS+LPTYYLS+F++P 
Sbjct: 226 MPLGGNPKASPFWDPIIER--RKLESWKYSDISKAGRLTLIQSILSSLPTYYLSIFKSPI 285

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAIT 105
            V K +E+LMRDFLW+G      SHLVRW+I T PK  G L IT
Sbjct: 286 QVTKALEKLMRDFLWKGIGDKRGSHLVRWNIVTLPKSKGSLGIT 327

[Close]

BLAST of Cla97C06G128255 vs. NCBI nr
Match: KAA0035248.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-29
Identity = 108/346 (31.21%), Postives = 148/346 (42.77%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           +PLGGNP++ SFW   IE I KK + WKYS ISK GRLTLL+A LS+LPTY LS F+AP 
Sbjct: 160 VPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPV 219

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAANLLGIALLSFITT 120
            V K IE+  RDFLW G+E    +HLV W I TSPK +GGL I+   +     L  ++  
Sbjct: 220 SVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWR 279

Query: 121 FLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNGDTI-- 180
           +    N   L    + +       GD+ I        +    T   P P    NG TI  
Sbjct: 280 YHNESNS--LWKKCIDAKYTKNHQGDIPI--------VAGFPTMAPPYPFGTANGKTIFL 339

Query: 181 -------------------------RWKLTTDGTFTVKSIKDCI----RPPSPQN----- 240
                                     WK +    ++V S KD +      P   N     
Sbjct: 340 SPTKFLDSMLSRIYNQLLNRGISKPLWKPSDSNVYSVASAKDLVFKETSIPRETNWDLEV 399

Query: 241 -YLSKFVGNLWNSSESAEHIFMTCSFSSVFWDQLQQEGITLHTQTIQASLDFIFRQTTTN 300
            + +K + NLW+S                      + GI +    ++     + R T  N
Sbjct: 400 SHSTKILWNLWSS----------------------ETGIPMANTNVKDLCLSLCRLTGGN 459

Query: 301 KPQILNSNLIAATLWSIWLELNR-TFQGSCENQNYLWADILSLAAL 309
              I++ N   ATLW+IW+  N   F     +    W DI +L  +
Sbjct: 460 AKNIISFNAAIATLWTIWIRRNNLIFTEKDSSYQNAWEDICTLTGI 473

[Close]

BLAST of Cla97C06G128255 vs. NCBI nr
Match: TYK22403.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-29
Identity = 108/346 (31.21%), Postives = 148/346 (42.77%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           +PLGGNP++ SFW   IE I KK + WKYS ISK GRLTLL+A LS+LPTY LS F+AP 
Sbjct: 160 VPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPV 219

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAANLLGIALLSFITT 120
            V K IE+  RDFLW G+E    +HLV W I TSPK +GGL I+   +     L  ++  
Sbjct: 220 SVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWR 279

Query: 121 FLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNGDTI-- 180
           +    N   L    + +       GD+ I        +    T   P P    NG TI  
Sbjct: 280 YHNESNS--LWKKCIDAKYTKNHQGDIPI--------VAGFPTMAPPYPFGTANGKTIFL 339

Query: 181 -------------------------RWKLTTDGTFTVKSIKDCI----RPPSPQN----- 240
                                     WK +    ++V S KD +      P   N     
Sbjct: 340 SPTKFLDSMLSRIYNQLLNRGISKPLWKPSDSNVYSVASAKDLVFKETSIPRETNWDLEV 399

Query: 241 -YLSKFVGNLWNSSESAEHIFMTCSFSSVFWDQLQQEGITLHTQTIQASLDFIFRQTTTN 300
            + +K + NLW+S                      + GI +    ++     + R T  N
Sbjct: 400 SHSTKILWNLWSS----------------------ETGIPMANTNVKDLCLSLCRLTGGN 459

Query: 301 KPQILNSNLIAATLWSIWLELNR-TFQGSCENQNYLWADILSLAAL 309
              I++ N   ATLW+IW+  N   F     +    W DI +L  +
Sbjct: 460 AKNIISFNAAIATLWTIWIRRNNLIFTEKDSSYQNAWEDICTLTGI 473

[Close]

BLAST of Cla97C06G128255 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 16  IIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPTVVCKTIERLMRDFLW 75
           I+E++  +   W+   +S  GRLTL +AVLS++P + +S    P  +   +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 76  EGTEKSGASHLVRWDITTSPKHIGGLAITIAANLLGIALLS 117
             T +    HLV+W    SPK  GGL +  AA  +  AL+S
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVR-AAKSMNRALIS 115

[Close]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL
Match: A0A438IBZ1 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_158 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-33
Identity = 116/340 (34.12%), Postives = 157/340 (46.18%), Query Frame = 0


Query: 1    MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
            +PLGGNPKA  FW P++E+I  + D W+ +Y+S GGR+TL+Q+ L++LP+Y+LSLF+ P 
Sbjct: 1105 LPLGGNPKACGFWDPVVERISSRLDGWQKAYLSFGGRITLIQSCLTHLPSYFLSLFKIPA 1164

Query: 61   VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAA----NLLGIALLS 120
             V   IERL RDFLW G  +    HLVRWD+   PK IGGL +   +     LLG  L S
Sbjct: 1165 SVAAKIERLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGLGNISWRNLALLGKWLWS 1224

Query: 121  FITTFLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPS--FDLN 180
             + T L  L G    +   S  +R  +       L      LW+         S   DL 
Sbjct: 1225 QMVTSLS-LEGYCSSLSGFSLITRYVVGNGEEFVLGPSRPFLWNLNFRRNLSDSEIEDLE 1284

Query: 181  G---------------DTIRWKLTTDGTFTVKSIKDCIRPP--SPQNYLSKFVGNLWNSS 240
            G               D   W L++ G F+VKS    +     S QN+ SKFV   WNS 
Sbjct: 1285 GLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQSSGSSQNFPSKFV---WNSQ 1344

Query: 241  ESAEHIFMTCS------FSSVFWDQ--LQQEGITLHTQTIQASLDFIFRQTTTNKPQILN 300
               +     C+      FSS+F D   + Q GI L      AS+                
Sbjct: 1345 VPFKVKSFVCTGNQQIIFSSLFLDDWVVAQRGIVLWQ---AASI---------------- 1404

Query: 301  SNLIAATLWSIWLELN-RTFQGSCENQNYLWADILSLAAL 309
                 A +  +W E N R F+    N  +LW  I+ LA+L
Sbjct: 1405 -----ALIRVVWWERNARIFEDKARNSEFLWDSIVFLASL 1416

[Close]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-31
Identity = 61/103 (59.22%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1    MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
            MPLGG+P+  SFW+P+++K  K+ D WK +++SKGGRLTL+Q+VLS+LP Y+LSLF+AP 
Sbjct: 1457 MPLGGSPRKWSFWEPVMDKCAKRLDGWKCAFLSKGGRLTLIQSVLSSLPLYFLSLFKAPR 1516

Query: 61   VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAI 104
             V K +E++MRDFLWEG+E SG  HLV WD    P+H GGL I
Sbjct: 1517 SVTKALEKMMRDFLWEGSESSGGEHLVAWDEVCRPRHEGGLGI 1559

[Close]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL
Match: A5BHF0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018758 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-30
Identity = 105/329 (31.91%), Postives = 158/329 (48.02%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           +PLGGNPK   FW P+IE+I  + D W+  Y+S GGR+TL+Q+ L+++P Y+LSLF+ P 
Sbjct: 214 LPLGGNPKXCXFWDPVIERISSRLDGWQKXYLSFGGRITLIQSCLTHMPCYFLSLFKIPA 273

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAA--NL--LGIALLS 120
            V   IERL RDFLW G  +    HLVRWD+   PK IGGL     +  NL  LG  L  
Sbjct: 274 SVAAKIERLQRDFLWXGIGEXKRDHLVRWDVVCKPKAIGGLGFGNISWRNLAFLGKWLWR 333

Query: 121 FITTFLKILNGVLLMV-GTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNG 180
           +      + + V+L + G+ S+G       D +  +    +  W A    +P      + 
Sbjct: 334 YXREGSXLWHQVILSIYGSHSNG------WDANTLVRWSHRCPWKAIAQVFPGVFLVYSD 393

Query: 181 DTIRWKLTTDGTFTVKSI-----------KDCIRPPSPQNYLSKFVGNL-WNSSESAEHI 240
              ++   +   F VKS             D ++   P   LS  +  L     ESA+H+
Sbjct: 394 FPSKFVWNSQVXFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSLDICILCMKHGESADHL 453

Query: 241 FMTCSFSSVFWDQLQQ--EGITLHTQTIQASLDFIFRQTTTNKPQI-LNSNLIAATLWSI 300
           F+ CS +   W ++ Q  +   +   +I   +   F+   T+K  I L      A +  +
Sbjct: 454 FLHCSLTIGLWHRVFQLAKMDWVPPMSISDMMSIKFKGFGTSKRGIVLWQAANIALIRVV 513

Query: 301 WLELN-RTFQGSCENQNYLWADILSLAAL 309
           W E N R F+    N  +LW  I+ LA+L
Sbjct: 514 WWERNARIFEDKTRNSEFLWDSIVFLASL 536

[Close]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL
Match: A0A6J1CNG6 (uncharacterized protein LOC111013210 OS=Momordica charantia OX=3673 GN=LOC111013210 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-30
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           MPLGGNPKA+ FW PIIE+  +K ++WKYS ISK GRLTL+Q++LS+LPTYYLS+F++P 
Sbjct: 226 MPLGGNPKASPFWDPIIER--RKLESWKYSDISKAGRLTLIQSILSSLPTYYLSIFKSPI 285

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAIT 105
            V K +E+LMRDFLW+G      SHLVRW+I T PK  G L IT
Sbjct: 286 QVTKALEKLMRDFLWKGIGDKRGSHLVRWNIVTLPKSKGSLGIT 327

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BLAST of Cla97C06G128255 vs. ExPASy TrEMBL
Match: A0A5A7SXB2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00260 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-30
Identity = 108/346 (31.21%), Postives = 148/346 (42.77%), Query Frame = 0


Query: 1   MPLGGNPKAASFWQPIIEKIDKKFDAWKYSYISKGGRLTLLQAVLSNLPTYYLSLFQAPT 60
           +PLGGNP++ SFW   IE I KK + WKYS ISK GRLTLL+A LS+LPTY LS F+AP 
Sbjct: 160 VPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPV 219

Query: 61  VVCKTIERLMRDFLWEGTEKSGASHLVRWDITTSPKHIGGLAITIAANLLGIALLSFITT 120
            V K IE+  RDFLW G+E    +HLV W I TSPK +GGL I+   +     L  ++  
Sbjct: 220 SVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWR 279

Query: 121 FLKILNGVLLMVGTLSSGSRIGIAGDVSIPLMQREKDLWSATTAGWPQPSFDLNGDTI-- 180
           +    N   L    + +       GD+ I        +    T   P P    NG TI  
Sbjct: 280 YHNESNS--LWKKCIDAKYTKNHQGDIPI--------VAGFPTMAPPYPFGTANGKTIFL 339

Query: 181 -------------------------RWKLTTDGTFTVKSIKDCI----RPPSPQN----- 240
                                     WK +    ++V S KD +      P   N     
Sbjct: 340 SPTKFLDSMLSRIYNQLLNRGISKPLWKPSDSNVYSVASAKDLVFKETSIPRETNWDLEV 399

Query: 241 -YLSKFVGNLWNSSESAEHIFMTCSFSSVFWDQLQQEGITLHTQTIQASLDFIFRQTTTN 300
            + +K + NLW+S                      + GI +    ++     + R T  N
Sbjct: 400 SHSTKILWNLWSS----------------------ETGIPMANTNVKDLCLSLCRLTGGN 459

Query: 301 KPQILNSNLIAATLWSIWLELNR-TFQGSCENQNYLWADILSLAAL 309
              I++ N   ATLW+IW+  N   F     +    W DI +L  +
Sbjct: 460 AKNIISFNAAIATLWTIWIRRNNLIFTEKDSSYQNAWEDICTLTGI 473

The following BLAST results are available for this feature:

BLAST of Cla97C06G128255 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW94236.1	4.5e-33	34.12	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
CAN81137.1	6.0e-30	31.91	hypothetical protein VITISV_018758 [Vitis vinifera]	[more]
XP_022143310.1	1.0e-29	62.50	uncharacterized protein LOC111013210 [Momordica charantia]	[more]
KAA0035248.1	1.8e-29	31.21	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK22403.1	1.8e-29	31.21	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C06G128255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.2e-12	36.63	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IBZ1	2.2e-33	34.12	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A803P465	5.9e-31	59.22	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A5BHF0	2.9e-30	31.91	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018758 PE=4 SV=1	[more]
A0A6J1CNG6	5.0e-30	62.50	uncharacterized protein LOC111013210 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7SXB2	8.5e-30	31.21	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Cla97C06G128255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 305..308
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G128255.1	Cla97C06G128255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity