Cla97C06G124460 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G124460
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description40S ribosomal protein S28
LocationCla97Chr06: 26651184 .. 26652225 (+)
RNA-Seq ExpressionCla97C06G124460
SyntenyCla97C06G124460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGGTTAGTATCGACTCCCTTCTTCGGTGTACGGTGATCTCTTTGGCTCGTTGTTCTGTTCCGAATCCATAGCATTGGCAGCGGTTCGGCTTTGAATTCTCTCGAAGATAGTTAGTTGACAAATTACTGCATTTACTATTCAGTTTTGAATCTTTCGTTCGTTGTTTGTATGATTTTGTTTTCACGATTGGATTCTTACTCTGAAGAAAGTTTCCGACTAATTATTAGATGGAGAACCGTAGTACTGTTTCTATATGTTTCATATTTGACAGATGATTATTGAGATTCAGATTCGAGATTTTTAGATTTATCGTTCTTAGTCTTGCAGGAGATTGTTTATGAGTTGAAAACCTTGTTATTCTATACTATGCAGACATTTTCCTCGGTGTCTTGGTTCATAGTATTGAAGTAATGAGAATTGTAATTCGCATATCTGCTGAAAAAGATGGTCTCTTCTGCACTTATATAATTTCATAGAATATTCTGCACTGACATTCATAAGTTTTTCTGTTTTCCATTAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGTGGGTGGTGGTAGATTGTTTTGCAAAAAGCTACTTAGATTGTTTATAAAGGAAAAGGTTCTTGGATTGTGTAAGATTAAGTTATTGGTGTGTTTGTGCAGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

mRNA sequence

ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Coding sequence (CDS)

ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

MGVYSSSHTIRNPSYVSIWLLYSYIGRFCNPAACLQFYKVLSVLFLFLSRLSLLFLKLQIKLFKLGSGAVEVVIGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Homology
[Close]
BLAST of Cla97C06G124460 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 135 EARRLR 141
           EARRLR
Sbjct: 104 EARRLR 109

[Close]
BLAST of Cla97C06G124460 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 34  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 93

Query: 135 EARRLR 141
           EARRLR
Sbjct: 94  EARRLR 99

[Close]
BLAST of Cla97C06G124460 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 135 EARRLR 141
           EARRLR
Sbjct: 101 EARRLR 106

[Close]
BLAST of Cla97C06G124460 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-26
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 47  GMESQIKHAMVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 106

Query: 135 EARRLR 141
           EARRLR
Sbjct: 107 EARRLR 112

[Close]
BLAST of Cla97C06G124460 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 136 ARRLR 141
           ARRLR
Sbjct: 116 ARRLR 120

[Close]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 80  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 139
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 140 R 141
           R
Sbjct: 69  R 69

[Close]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 80  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 139
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 140 R 141
           R
Sbjct: 69  R 69

[Close]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 135 EARRLR 141
           EARRLR
Sbjct: 101 EARRLR 106

[Close]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 135 EARRLR 141
           EARRLR
Sbjct: 104 EARRLR 109

[Close]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]
BLAST of Cla97C06G124460 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]
BLAST of Cla97C06G124460 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]
BLAST of Cla97C06G124460 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:
BLAST of Cla97C06G124460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922061.12.4e-26100.0040S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata][more]
KAG7023246.12.4e-26100.0040S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022922062.12.4e-26100.0040S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata][more]
KAG6595421.15.4e-2698.4840S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022134697.11.2e-25100.0040S ribosomal protein S28-1-like [Momordica charantia][more]
BLAST of Cla97C06G124460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463021.4e-2490.7740S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR733.1e-2492.3140S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347891.2e-2389.2340S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK32.3e-1980.3340S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP32.3e-1980.3340S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Cla97C06G124460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2261.2e-26100.0040S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1E3361.2e-26100.0040S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1HTG75.8e-26100.0040S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=... [more]
A0A0A0LPR25.8e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
A0A1S3CD615.8e-26100.0040S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
BLAST of Cla97C06G124460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10090.12.2e-2592.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G03850.12.2e-2592.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G64140.18.2e-2589.23ribosomal protein S28 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 79..139
e-value: 1.1E-31
score: 108.5
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 76..140
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 76..140
score: 21.430906
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 81..140
e-value: 3.76251E-35
score: 114.269
NoneNo IPR availableGENE3D2.40.50.140coord: 75..140
e-value: 8.0E-36
score: 123.7
NoneNo IPR availablePANTHERPTHR10769:SF340S RIBOSOMAL PROTEIN S28coord: 76..140
IPR028626Ribosomal protein S28e conserved sitePROSITEPS00961RIBOSOMAL_S28Ecoord: 131..139
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 76..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G124460.1Cla97C06G124460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0006508 proteolysis
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003735 structural constituent of ribosome