Cla97C06G122740 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G122740
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionSyntaxin-6_N domain-containing protein
LocationCla97Chr06: 25014693 .. 25015044 (+)
RNA-Seq ExpressionCla97C06G122740
SyntenyCla97C06G122740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGGCCATCACCGCACACACATTCGATCAAACGGTCGCAAGAAGATCAAGAAATCTATGCCCAATTAGAAGTTTACACGTCATGATAATGGAGGAATATAGGTGTGGCGGGATGCAGCGGCTTAAAACTTGCAACTTCTGCAAATAAGGTGGAAGGGGAAGGAGAAGGGAAGGGAAAGGAAAGGAAAGGAAGGAGAAAGGGGAACGGAATCGCTTTTACGCCTCTCTCTCTCAATTCTCTGTTTATCTTATTAGCAGAGGAGAGGGAAAGAGGGAGTGAAGATTACGATTTCGCTTCCTCTTTTCCTCTGGGATTTCTAATAAACCTAGAAATTTTGAGTTTCTGA

mRNA sequence

ATGGATTTGGCCATCACCGCACACACATTCGATCAAACGGTCGCAAGAAGATCAAGAAATCTATGCCCAATTAGAAGTGTGGCGGGATGCAGCGGCTTAAAACTTGCAACTTCTGCAAATAAGGTGGAAGGGGAAGGAGAAGGGAAGGGAAAGGAAAGGAAAGGAAGGAGAAAGGGGAACGGAATCGCTTTTACGCCTCTCTCTCTCAATTCTCTGTTTATCTTATTAGCAGAGGAGAGGGAAAGAGGGAGTGAAGATTACGATTTCGCTTCCTCTTTTCCTCTGGGATTTCTAATAAACCTAGAAATTTTGAGTTTCTGA

Coding sequence (CDS)

ATGGATTTGGCCATCACCGCACACACATTCGATCAAACGGTCGCAAGAAGATCAAGAAATCTATGCCCAATTAGAAGTGTGGCGGGATGCAGCGGCTTAAAACTTGCAACTTCTGCAAATAAGGTGGAAGGGGAAGGAGAAGGGAAGGGAAAGGAAAGGAAAGGAAGGAGAAAGGGGAACGGAATCGCTTTTACGCCTCTCTCTCTCAATTCTCTGTTTATCTTATTAGCAGAGGAGAGGGAAAGAGGGAGTGAAGATTACGATTTCGCTTCCTCTTTTCCTCTGGGATTTCTAATAAACCTAGAAATTTTGAGTTTCTGA

Protein sequence

MDLAITAHTFDQTVARRSRNLCPIRSVAGCSGLKLATSANKVEGEGEGKGKERKGRRKGNGIAFTPLSLNSLFILLAEERERGSEDYDFASSFPLGFLINLEILSF
Homology
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BLAST of Cla97C06G122740 vs. ExPASy TrEMBL
Match: A0A0A0LUL0 (Syntaxin-6_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423110 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 27  VAGCSGLKLATSANKVEG--EGEGKGKERKGRRKGNGIAFTPLSLNSLFILLAEERERGS 86
           +A CSGLKL TSANK EG  +G+G+GKERK +                   L +ERERGS
Sbjct: 1   MAECSGLKLPTSANK-EGKRKGKGEGKERKKKES-----------------LLQERERGS 57

Query: 87  EDYDFASSFPLGFLI 100
           EDYDFASS    F I
Sbjct: 61  EDYDFASSSSFSFFI 57

The following BLAST results are available for this feature:
BLAST of Cla97C06G122740 vs.
Match NameE-valueIdentityDescription
BLAST of Cla97C06G122740 vs.
Match NameE-valueIdentityDescription
BLAST of Cla97C06G122740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUL07.3e-0550.67Syntaxin-6_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G42311... [more]
BLAST of Cla97C06G122740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G122740.1Cla97C06G122740.1mRNA