Cla97C06G122060 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G122060
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionglycine-rich cell wall structural protein 2-like
LocationCla97Chr06: 24406956 .. 24408782 (-)
RNA-Seq ExpressionCla97C06G122060
SyntenyCla97C06G122060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTGTTTTCATTTAAAATTTTAGACACAAACATTTTCGGTACTGTAATTACTAAAAAAAAAGTTTACTCTCTTTTTTTCAAGTGTAGTCTGATCATTTAAAATGTTTATAACCATCAAATCAGTGGATAGATTATGTAAACAAAAATACCAGAAAAATTATATATTTTTTAAAAGAATTGTTTTTTCGGTTGGAAAATCTAAGATTCTCATAAAATGCCTTCAAATTTACCAAAAACTATAAAATAGATGTATAGTTGATATATAATTACTTAACATATTTTCAAGGGATGTTCTTAAATATGGCAAAATTGTTGAAAATAATTATAAATATAGCAAAATTTCTGTGATAAATCAGATATCTATCACTTTAGCGATAGACAATAATAACGGTCTATCACAAATAAAATTTGTAATTTAATAATTTTATCATTTAAGATAATTTTCTTATTTTTTAACTTTTTTCTGAAAAAATAAACATATAGGAATATATAATATACATTAAACAAATTGAAATTTGACTAATCATGTCATATGACAAAAATTTCGTTACAGTAGAGTAGATTAACACAAAAACACATACCAATCATTGTAAGGCAGGAATTCTCCATTACTCAAGAGATACACACAGACTAATTCTTTTTTTTTAAAAAAAAAAAAAATATATATATATATATATATATATATGAACAGACCGTAGGTATATGTATATTTTCATTTTTAGACCAAAACAAGCAAAATAGTTGTATTGTAGTCTCCTTCACTCAAAAGAATTTTTGAAAAGGAAACCATGAACTTAGGTGCTAGTCTAACTGTTGCTCTAAAAATATTTACCATATATGTATCAATTTATGATGGAGAGTTCAGTGAACTAATGCATTCAAGTATATATATATTTAAAGTATTTTTCTTTTATTGTGAGACATTAAAAAAAATATATATGTGTGTGTGTGTGTGTGTGCAGCTCATGCATCAAAATATTGGTGACGTAAATTTGGAGTGCACTAAAATTAGTGGAGAAACCGAGGAGGAGTGGGCAACAAAAAGTCAGTAATGAAATTCACTTTCCATTGTCAAACTCTCTCCCGCACCAACTTCTTTAATAATTCACCACTTCAATTCCACATAGTTATATGATTAACTACAATCAATCATTCACATAAAAAAAATATTGGCAGCAGCCTTCCACTTCTAAAGAATATTAACACTTGTCCAAACGCCATAATCTTCAAACAATTTTGAGCATCCTCAGCCACAGAATTTGCCCCCCGCAAGCTTTTTGTAGTGGCCACCTCATCGTACCATTTCAAAAATGGCCCCAACAGCCTTCTCAGCAAATTTTATTATAAATATCTCCCCTCAAGCCTCCCCCATAATGCCCACATCAAACCGTTAAACCCTAAACCCTAGAGAACTTAATTTGTTTAAACAATGCCTTCAATCAAGTCCCTTGCGGTTGCTGTTTGCTTTTTACTCTCTTTTTCCGCCATTCTCTCTGAAGGTCGAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGGGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCGAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCGGGATCTGGTTCGGGATATGGCGGAGGTTGGGGCAGAGGAGGCGGTGAAGGTCATGGCTATGGAGGAGGCAACTAA

mRNA sequence

ATGTTATTGTTTTCATTTAAAATTTTAGACACAAACATTTTCGGTACTCTCATGCATCAAAATATTGGTGACGTAAATTTGGAGTGCACTAAAATTAGTGGAGAAACCGAGGAGGAGTGGGCAACAAAAAGTCGAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGGGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCGAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCGGGATCTGGTTCGGGATATGGCGGAGGTTGGGGCAGAGGAGGCGGTGAAGGTCATGGCTATGGAGGAGGCAACTAA

Coding sequence (CDS)

ATGTTATTGTTTTCATTTAAAATTTTAGACACAAACATTTTCGGTACTCTCATGCATCAAAATATTGGTGACGTAAATTTGGAGTGCACTAAAATTAGTGGAGAAACCGAGGAGGAGTGGGCAACAAAAAGTCGAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGGGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCGAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCGGGATCTGGTTCGGGATATGGCGGAGGTTGGGGCAGAGGAGGCGGTGAAGGTCATGGCTATGGAGGAGGCAACTAA

Protein sequence

MLLFSFKILDTNIFGTLMHQNIGDVNLECTKISGETEEEWATKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGGGEGHGYGGGN
Homology
BLAST of Cla97C06G122060 vs. NCBI nr
Match: XP_038879748.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 101/125 (80.80%), Postives = 104/125 (83.20%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSG 101
           ++ RVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSS S SSSSSSGSG
Sbjct: 22  SEGRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSYSSSSSSSSGSG 81

Query: 102 AGSEAGSYAGSRAGS--GSGGNRNGGSGSGSGYGGGWGRGG--------------GEGHG 151
           AGSEAGSYAGS AGS  GSGGNRNGGSGSG+GYGGG GRGG              GEGHG
Sbjct: 82  AGSEAGSYAGSYAGSRAGSGGNRNGGSGSGTGYGGGSGRGGGNGGGEGYGEGHGYGEGHG 141

BLAST of Cla97C06G122060 vs. NCBI nr
Match: XP_008443813.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-21
Identity = 101/131 (77.10%), Postives = 105/131 (80.15%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSS 101
           ++ RVARKDLGIDLGG+GVGLGAGIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSS
Sbjct: 22  SEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSGSGSGSGSGSSSSSSSYSSSSS 81

Query: 102 SGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG------------- 151
           SGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYGGG GRGG             
Sbjct: 82  SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGYGGGSGRGGSNGNGEGYGEGHG 141

BLAST of Cla97C06G122060 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-20
Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSS 101
           +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSS
Sbjct: 21  SQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGSGSGSGSGSSSSSSSSSYSSS 80

Query: 102 SSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG--------GEGHGYG 150
           S SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGGG GRG         GEGHGYG
Sbjct: 81  SGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYG 140

BLAST of Cla97C06G122060 vs. NCBI nr
Match: XP_004146660.2 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_020101 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 99/125 (79.20%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSS 101
           ++ RVARKDLGIDLGGVGVGLG GIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSS
Sbjct: 22  SEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSGSGSGSGSGSSSSSSSYSSSSS 81

Query: 102 SGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG---------GEGH 150
           SGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYGGG GRGG         GEGH
Sbjct: 82  SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGYGGGSGRGGGSNDNGEGYGEGH 141

BLAST of Cla97C06G122060 vs. NCBI nr
Match: XP_023515819.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSS 101
           +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSS
Sbjct: 21  SQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGSGSGSGSGSSSSSSSSSYSSS 80

Query: 102 SSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG--------GEGHGYG 150
           S SGSGAGSEAGSYAGSRAGS SG NRNGGSGSGSGYGGG GRG         GEGHGYG
Sbjct: 81  SGSGSGAGSEAGSYAGSRAGSASGRNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYG 140

BLAST of Cla97C06G122060 vs. ExPASy TrEMBL
Match: A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-21
Identity = 101/131 (77.10%), Postives = 105/131 (80.15%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSS 101
           ++ RVARKDLGIDLGG+GVGLGAGIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSS
Sbjct: 22  SEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSGSGSGSGSGSSSSSSSYSSSSS 81

Query: 102 SGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG------------- 151
           SGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYGGG GRGG             
Sbjct: 82  SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGYGGGSGRGGSNGNGEGYGEGHG 141

BLAST of Cla97C06G122060 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSS 101
           +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSS
Sbjct: 21  SQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGSGSGSGSGSSSSSSSSSYSSS 80

Query: 102 SSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG--------GEGHGYG 150
           S SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGGG GRG         GEGHGYG
Sbjct: 81  SGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYG 140

BLAST of Cla97C06G122060 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.6e-20
Identity = 99/125 (79.20%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSS 101
           ++ RVARKDLGIDLGGVGVGLG GIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSS
Sbjct: 22  SEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSGSGSGSGSGSSSSSSSYSSSSS 81

Query: 102 SGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG---------GEGH 150
           SGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYGGG GRGG         GEGH
Sbjct: 82  SGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGYGGGSGRGGGSNDNGEGYGEGH 141

BLAST of Cla97C06G122060 vs. ExPASy TrEMBL
Match: A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 98/126 (77.78%), Postives = 103/126 (81.75%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG---GSGSGSGSGSGSSSSSSSSSYSSSSSS 101
           +++RVARKDLGIDLGGVGVGLGAGIGLG G   GSG+G+GSGSGS SSSSSSSYSSSSSS
Sbjct: 22  SEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSS 81

Query: 102 GSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGG----------GEGH 151
           GSGAGSE    AGSYAGSRAGSGSGGNR  GSGSGSGYGGG GRG           GEGH
Sbjct: 82  GSGAGSEAGSYAGSYAGSRAGSGSGGNR--GSGSGSGYGGGSGRGSGEGYGEGHGYGEGH 141

BLAST of Cla97C06G122060 vs. ExPASy TrEMBL
Match: A0A6J1JK06 (putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485793 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG--GSGSGSGSGSGSSSSSSSSSYSSSSSSG 101
           +++RVARKDLG+DLGG+GVG+G GIGLGLG  GSGSGSGSGSGS SSSSSSSYSSSSSSG
Sbjct: 21  SQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGSGSGSGSSSSSSSYSSSSSSG 80

Query: 102 SGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGGGEGHGYGGGN 151
           SGAGSEAGSYAGSRAGSGSG NRNGG G G G+      G GEG GYGGGN
Sbjct: 81  SGAGSEAGSYAGSRAGSGSGRNRNGGEGYGEGH------GYGEGRGYGGGN 125

BLAST of Cla97C06G122060 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-15
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGS----SSSSSSSSYSSSSS 101
           ++SRVARKDLG+DLGG+G G+G GIG+G GGSGSG+G+GSGS    SSSSSSSS SSSSS
Sbjct: 24  SESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSSSSSSSSSSSSSS 83

Query: 102 SGSG---AGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGGGEGHGYGGG 150
           SG G   AGSEAGSYAGS AGSGSGG    G G GSG GGG G GGG G G GGG
Sbjct: 84  SGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGGGGGRGGG 138

BLAST of Cla97C06G122060 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 42  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG-----GSGSGSGSGSGSSSSSSSSSYSSSS 101
           T+SR+ARKDLGIDLGG+G+GLG G+G+GLG     G+G+GSGSGSGS SSSSSSS SSSS
Sbjct: 22  TESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGSRSSSSSSSSSSSS 81

Query: 102 SSGSG--AGSEAGSYAGSRAGSGSG 120
           SSGSG  AGS AGS+AGSRAGSGSG
Sbjct: 82  SSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038879748.11.5e-2180.80glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
XP_008443813.19.5e-2177.10PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
XP_022921883.18.0e-2078.69putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... [more]
XP_004146660.21.4e-1979.20glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypoth... [more]
XP_023515819.14.0e-1977.87putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B9N04.6e-2177.10glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1E5213.9e-2078.69putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... [more]
A0A0A0LTK96.6e-2079.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1[more]
A0A6J1C4972.8e-1877.78putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... [more]
A0A6J1JK066.2e-1879.28putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita max... [more]
Match NameE-valueIdentityDescription
AT4G30460.16.3e-1571.30glycine-rich protein [more]
AT4G30450.11.1e-1476.47glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..150
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 42..149
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 42..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G122060.2Cla97C06G122060.2mRNA