Cla97C06G119170 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G119170
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RNA-binding protein 42-like
Location	Cla97Chr06: 15632977 .. 15636272 (-)
RNA-Seq Expression	Cla97C06G119170
Synteny	Cla97C06G119170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCTTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGTTTCTAATCCATCTATTTGGAATTTCACTTATTTGCTTCACTTTATATATATATTTGATCTCTCAAGTTGAAGAAGATTGTGCATATTTATTTCCGATATTTTGAATTGTTTCTAATGCTTTTCTTCTTTAGTTACTGTGCCGCAAAATAACATTTGGTTTTCCATTGTCTGTTTTTGAAAATTAAGCTATACTTCCGCCATAAGTTCATCCATTTTCTACCATGTTCTCATAAACCAAGCTAAGATTTGAAAATTAAGAAAACTAAAATCCCATTTAGTAACCATTCGATTTTTCTTTCTTTTTTCTAAGTTTTTAAAAATTAAGCTTATCAATCCCTCTTCCACCCCAAATCTCTAAAAATAAACCAAATTTTTTAGAATTTGATGGGAGAATATAACTATGGTATTTGAGTAAGATGCAAATTATCTAAAAAAATTAGGGGGAAATATTCCTAATTTTAAAAAATTAAAAACTGAAAACAAAATAGTTATCCAATGGAGTACAGGAATTCAAGTCTTCCTTCAAACAAGATGAAAATCGTAGTTGGGATATTTGGAGTAATCATGCATAATTCTTAATTTAAAAAAAAAAAACATAATAAAGTAAAATAAAAATGGAATCTTTATCAAACAAGGCCGATGTAATTTTAAATTTTTTTGGAAAAAGAAAACCAAGACAAAAGAACTTGCTAAAAAGGACAAATGAGAGCATCTCAGATACGAGAAAACTTGATTAGAAGATCCGCCAAAAAGCTCTGAAAACGATCACCAATAAGAAGCTTTGAAAAGTGCATAGCAAGTTCGCCCTTGAACCAAAAACATAGCAAAATCACTTTCAAATGTAAATATTGTCATATTGAATCATTGAACGCCATGGATTGAGGAATCGAAAGGTTTGAGTCCTTAAGGGGTGGACTCATTGATCAGGATCCTAGTCAAAGTTAATCATTCTTATTGGTTCAAAATCACTTTGAGAATATGATCTCCTTCATTCAAAATCAGTTTAGATAGTAAAAGAATTGGGCTTGAAAGTGTAAAAATCAAATTTGAAATAGATTTTGAATAATTAAAAGCATGTTTTAGGTTGGTTGTAAATACATTACAAGATCACTCCTAATATGTTTATGGTAACAGTGGCTAGATTTTTTGTTTTTGGAGAACTCGTGCACTAATTTTATTAGGGTAATTGGTAATTTAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAGTATGCTACCTTTTCGTTTCTTGCCCCTAATTTGTCTTATGTTATTTGGACCTATCTTTTATAGGAACCAAATATTGAGGTTGGAATTATAGCAACTACCATTTCAGAAATGGAGGACATCATGAGTATTGGATAATTATGGTTAAACTACCAATTCTTATCCTCATATGTGGTAATCTTGACAAGTTTGCACATTCTTTGCGTCTGGATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTGAGTTTCTACTTCATTCTTCTGGAACTCTATTCAGGCCTCATATTTTTTAACACAATCCATTTGTATGGTGTAAACTTCTTTATTTCTTGTTCAGATTTTGATTTGAAGCCCAAAGAGCAGTTAAACATGAAAGGTTGGTTCTAGTCCCACCTAATTTGCGTTTTATTTAATGTTCAATTATATATACTTTTTGGAACACACACACAAGTCGAGATCATATACGTTTCATATTCGGAACTTTTTGTTTTATCTTCCCGTCATGTACTTTGGACTGAATCATTTGCAACGATAAACCAACACATTTGCTCCTGATTGGAGCCCCTTTTGTAGGTCATTTTCTTTTCTTTGTATACGCTGTATTTTTACATCTTTTTCCTCAAAACAACACACTTGCTCATTCTAATTTTTGCATATATGATTGGCTGTGAGTGATAAGAAAGTAGATGTAATTATGGTCGTGGATGTGAATGCAATATGTGTAGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAATGCTTTAGTTTTTATAACAGCATTTGATGATAGAATGAAGCCAACATGGATGATACTTGAAAATGTTGTGCTTTCAGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGGTATTCATGTTTGGAATTGGATTGCACTAATTTTTTATTGTAACTGTACTCTTTCCTAAATTTATGTATTAGCATTCCTCCCTACAATTTTCTCTCATAGGGTATTATTCAACTAGATTATTATTGTTATTGGATAGCACATGCTTAAATCAATATGGTGATTGGTTGTCATGTGGATTTGCAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGAAAAGAAGGAGCATTGATGAAAATTCTCACGTATCGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGTCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAATTTTAGATATATTTAATATCTTACACAATTTTAACATCTGTTTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCATTCATTGTTTTCAAATATGTGGTTTGTAATAG

mRNA sequence

AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCTTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGAAAAGAAGGAGCATTGATGAAAATTCTCACGTATCGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGTCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAATTTTAGATATATTTAATATCTTACACAATTTTAACATCTGTTTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCATTCATTGTTTTCAAATATGTGGTTTGTAATAG

Coding sequence (CDS)

ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA

Protein sequence

MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

Homology

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BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_038877084.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 424.9 bits (1091), Expect = 4.7e-115
Identity = 213/236 (90.25%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVSAPAAAIYPLPQY 60
           MAAPCFWAPS+ISSSQFAYS GPCFPVPFHLQQSAP+ AAA TTAPV APAAA YPLPQY
Sbjct: 1   MAAPCFWAPSAISSSQFAYSVGPCFPVPFHLQQSAPLYAAAPTTAPVVAPAAATYPLPQY 60

Query: 61  HQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPT 120
                +QAQQLF KDAQIITPEALE VKVALARDEMEHKA+TKRKAIPRKAAGQKWEDPT
Sbjct: 61  -----QQAQQLFQKDAQIITPEALESVKVALARDEMEHKAETKRKAIPRKAAGQKWEDPT 120

Query: 121 LADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNP 180
           LADWPENDYRLFCGDLGNEVNDDVLSRAFS+FPSFNMARVVRDKRTGKTKGYGFVSFTNP
Sbjct: 121 LADWPENDYRLFCGDLGNEVNDDVLSRAFSQFPSFNMARVVRDKRTGKTKGYGFVSFTNP 180

Query: 181 LDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH 237
           LDLTAALKE NGKYVGNRPIKLRKSKWKDRIDYEAL +LKNKTQKNWKV+K+SV+H
Sbjct: 181 LDLTAALKERNGKYVGNRPIKLRKSKWKDRIDYEALAKLKNKTQKNWKVQKKSVLH 231

[Close]

BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_038890923.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 334.7 bits (857), Expect = 6.4e-88
Identity = 176/249 (70.68%), Postives = 193/249 (77.51%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------------AATTAPVS 67
           APSS S SQF YS G  FP+PFHLQQSAP +AA                    A+  P  
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAAAAPQYPSPYVAPPGPPAVPLPVASVYPPP 69

Query: 68  APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIP 127
           APA A+Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIP
Sbjct: 70  APAPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIP 129

Query: 128 RKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGK 187
           RKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGK
Sbjct: 130 RKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGK 189

Query: 188 TKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWK 238
           TKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R KN TQK  K
Sbjct: 190 TKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQKKSK 249

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BLAST of Cla97C06G119170 vs. NCBI nr
Match: KAG6598941.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-87
Identity = 177/247 (71.66%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------AATTAPVS----AP 67
           APSS S SQF YS G  FP+PFHLQQSAP  A               A   PV+    AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-87
Identity = 177/247 (71.66%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------AATTAPVS----AP 67
           APSS S SQF YS G  FP+PFHLQQSAP  A               A   PV+    AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-87
Identity = 177/247 (71.66%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------AATTAPVS----AP 67
           APSS S SQF YS G  FP+PFHLQQSAP  A               A   PV+    AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.4e-42
Identity = 83/128 (64.84%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L+ D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 364

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 365 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 424

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 425 RKSMWKDR 430

[Close]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 337 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 396

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 397 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 456

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 457 RKSMWKDR 462

[Close]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 335 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 394

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 395 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 455 RKSMWKDR 460

[Close]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 335 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 394

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 395 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 455 RKSMWKDR 460

[Close]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot
Match: A2VDB3 (RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40
Identity = 99/203 (48.77%), Postives = 127/203 (62.56%), Query Frame = 0


Query: 22  GPCFPVPFHLQQSAP------VSAAAA--TTAPVSAPAAAIYPLPQYHQVGVEQAQQLFH 81
           GP  P P  + QSAP      + AA    T  PV  P   I   P    +  E+ + L +
Sbjct: 177 GPLPPPPRPMVQSAPKINPTVIQAAPTVYTAPPVRKPEEEIVEPP----IIPEEKESLSY 236

Query: 82  KDAQI------ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPEN 141
           ++  I      I P   E V   +  D+ + K +  ++ I R AAG  WED +L +W  +
Sbjct: 237 EETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCI-RTAAGTSWEDQSLLEWEPD 296

Query: 142 DYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAAL 201
           D+R+FCGDLGNEVNDD+L+RAFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A 
Sbjct: 297 DFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAT 356

Query: 202 KEMNGKYVGNRPIKLRKSKWKDR 211
           +EMNGKYVG+RPIKLRKS+WKDR
Sbjct: 357 REMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.2e-87
Identity = 177/247 (71.66%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------AATTAPVS----AP 67
           APSS S SQF YS G  FP+PFHLQQSAP  A               A   PV+    AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL
Match: A0A6J1D848 (RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 2.0e-87
Identity = 178/259 (68.73%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAAA---------------- 60
           MA P   APS+ SSS   QF +S    FP+PFHLQQSAP +AAA                
Sbjct: 1   MAGPSSSAPSAASSSSGAQFTFSNASYFPLPFHLQQSAPPAAAAQYPTPYVAAPGPPPVP 60

Query: 61  ---ATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEH 120
              A+  P  AP  A+Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EH
Sbjct: 61  LPVASVYPTPAPGPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS++FSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DYEALER
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALER 240

[Close]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL
Match: A0A6J1KCL6 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.6e-87
Identity = 174/247 (70.45%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSA-----------------PVSAAAATTAPVSAP 67
           APSS S SQF YS G  FP+PFHLQQSA                 P +     T+   AP
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAP 69

Query: 68  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 127
           A A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRK
Sbjct: 70  APAAYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK 129

Query: 128 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 187
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTK
Sbjct: 130 AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 189

Query: 188 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ 
Sbjct: 190 GYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLP 249

[Close]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.9e-86
Identity = 178/259 (68.73%), Postives = 195/259 (75.29%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAA----------------- 60
           MA P F APS+ SSS   QF YS G  FP+PFHLQQSAP + A                 
Sbjct: 1   MAGP-FSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  --AATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEH 120
              A+  P  APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EH
Sbjct: 61  LPVASVYPTPAPAPAAYNLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WEDPTL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR 240

[Close]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL
Match: A0A6J1HLU5 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 8.4e-86
Identity = 180/263 (68.44%), Postives = 197/263 (74.90%), Query Frame = 0


Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSA---------------------- 60
           MA P F APS+ SSS   QF YS G  FP+PFHLQQSA                      
Sbjct: 1   MAGP-FSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  -PVSAAAATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARD 120
            PV++   T AP SAPAA  Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  
Sbjct: 61  LPVASVYPTPAPASAPAA--YTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASS 120

Query: 121 EMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPS 180
           E+EHKA+TK+KAIPRKAAGQ WEDPTL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPS
Sbjct: 121 EIEHKAETKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS 180

Query: 181 FNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYE 238
           FNMARVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYE
Sbjct: 181 FNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYE 240

[Close]

BLAST of Cla97C06G119170 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-79
Identity = 153/241 (63.49%), Postives = 179/241 (74.27%), Query Frame = 0


Query: 4   PCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPV-SAPAAAIYPLP---- 63
           P   + SS SSSQ+ Y+A   +  P+   Q    + + A  APV S P A +YP P    
Sbjct: 5   PSSGSSSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPVGPV 64

Query: 64  --QYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKW 123
              Y     +QA QLF +DAQ ITPEALE VK ALA  E EHKA+TK++AIPRKAAGQ W
Sbjct: 65  PAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSW 124

Query: 124 EDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVS 183
           EDPTL++WPENDYRLFCGDLGNEVNDDVLS+AF+RFP+FNMA+V+RDKRTGKTKGYGFVS
Sbjct: 125 EDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVS 184

Query: 184 FTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH 238
           F NP DL AALKEMNGKYVGNRPIKLRKS WK+R D EA ER K+ + K  K  K+S++H
Sbjct: 185 FLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILH 244

[Close]

BLAST of Cla97C06G119170 vs. TAIR 10
Match: AT1G54080.1 (oligouridylate-binding protein 1A )

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D  L  +FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207

Query: 189 EMNGKYVGNRPIK 202
           EMNGK+V +R I+
Sbjct: 208 EMNGKWVSSRQIR 220

[Close]

BLAST of Cla97C06G119170 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-14
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 189 EMNGKYVGNRPIK 202
           EMNGK++ +R I+
Sbjct: 204 EMNGKWLSSRQIR 216

[Close]

BLAST of Cla97C06G119170 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 189 EMNGKYVGNRPIK 202
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

[Close]

BLAST of Cla97C06G119170 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 189 EMNGKYVGNRPIK 202
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

The following BLAST results are available for this feature:

BLAST of Cla97C06G119170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877084.1	4.7e-115	90.25	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_038890923.1	6.4e-88	70.68	RNA-binding protein 42-like [Benincasa hispida]	[more]
KAG6598941.1	2.4e-87	71.66	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023545858.1	2.4e-87	71.66	RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929768.1	2.4e-87	71.66	RNA-binding protein 42-like [Cucurbita moschata]	[more]

BLAST of Cla97C06G119170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0P5L0	9.4e-42	64.84	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	1.2e-41	64.84	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	1.2e-41	64.84	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	1.2e-41	64.84	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]
A2VDB3	1.8e-40	48.77	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1	[more]

BLAST of Cla97C06G119170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET57	1.2e-87	71.66	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A6J1D848	2.0e-87	68.73	RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1	[more]
A0A6J1KCL6	7.6e-87	70.45	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=...	[more]
A0A6J1FBP0	2.9e-86	68.73	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]
A0A6J1HLU5	8.4e-86	68.44	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=...	[more]

BLAST of Cla97C06G119170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	1.5e-79	63.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.1	5.0e-14	47.95	oligouridylate-binding protein 1A	[more]
AT3G14100.1	6.5e-14	46.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	2.5e-13	43.84	oligouridylate binding protein 1B	[more]
AT1G17370.2	2.5e-13	43.84	oligouridylate binding protein 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 130..203 e-value: 5.5E-20 score: 82.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 131..201 e-value: 7.0E-19 score: 67.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 129..207 score: 16.159025
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 84..212 e-value: 8.1E-23 score: 83.1
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 40..237
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 40..237
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 123..205 e-value: 2.38202E-57 score: 175.104
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 113..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G119170.2	Cla97C06G119170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding