Cla97C06G119060 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G119060
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr06: 14877771 .. 14879656 (+)
RNA-Seq ExpressionCla97C06G119060
SyntenyCla97C06G119060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAGAGAGATAGGGAGGGGAGTGGGATAGAGGAAGTATAGTAAACTGTTGAGTGGCTATCCAACCATTCAATCGGCTATGGAGGGAGGTTTCAGCAAGCGGGTAAACCGATGCAAAACGGAGGTAGGTCGATCATCGCTCATCCCTCGTGTTCTCTCCCGTGAAGTGATTAATCCGGGTATGCAATCCCTATGGAAAAGAAAGTCTTCCGATTGGAGGAAATTTCCACCCTCTGATTGATGATCCATTCCGCCCTTCCGTATAGCCAGAAAGGTATTCAATCTTATGGATGACTTTCAGTAGTTCTTCCATCCCCTCCTGTTCCACCTATCCCTTCACTCCCCAGGGATTCCGTACAGCTAGACAACCACGGTTCATCGCTCGGAGAGAAAGAATAGAAGCAAGCATTTCCCGTTCAGTCGGTAATGAATCAATACGCAGGGAAACTCTCTTCCATGGGAATGGCAAGTCTCGGACAGGCTCATATTGGTTGGGTATGCTCTTTCCATAGGCGACTTTCCAGAAGGTCTTCAAGGTAGATATGCTCTTCTTCTCAGAAAGACCATACTTTTTTTTGGTCAGGGGGCACAGAAGGGAGAGTGGGCCGGGTTTCAAGCCTGGTTGCATGTGACTGAGTCGGGAGAGGGGGGCGAAGAGATCCGCAACTTTCACTGCAAAATTTCCTTTTTTTTTCCGTCTTTCTTTTTCTAGTAAGATTTCAATATCATCCTTCGAGAATCTTTAATCCTCATGTTCGTCATGCTATGAATATAGGTAGGCAAATCACGCCATTTCTTTTGAAGAGTAGCGTTCATCTGATATAATTCACTTTCACTTCGAAAGCATCTTTTGAAATAGAGGTACCGGTCACCCAAATTCTCGAGTTTGAATAGGGTCGGGGTTCATCATATTGAAAAGTGGCATGGCTTCGGTTTCGATGAAAATGGAAAGAATAGAACCTACTATCCACCCACGCCAGATCCCCTAAACAACCTACATCCAAAGATGAGAGTTGTTGAAGAGCCTTTTTTTTTAACGGCTTATACCCCAAAGTATGACACGCACTAGATGTAATGGAACGGACGGGATGAAGCCCAGAAGAAAACTACAATAAAAAAGAATGGAATGAGGGCATAGGTTGCCAGTTTTCGGAGCTTCTCTTTACGAAAATGTTCTTTGACCCCGGGGGGCTCTATTGTGGAGGGTCTGCCGTTGTTAACCGGGAAAAGAGTGGGACTTGAAAAGAGGATGGGAGAGAGGGGAACTCAAACAAGTAATAGAAGAGAGGAGAGAGCCTTCTAAAAGCCGTACTGCTGCTGTTGTTTCTATACGCAAATTGTGTGAATTTTGTTAGCGGCAGCTATCCCGCATGAGACTTTTGATGAACTCTAATTCCGCCTCCGTTTTTTACAGCAGCATTCCTTTCAAAACAAAAAAGTCAGAGTTAGTGCTCATTGACCCCCTTTTTGTTGTTCGAAGTCAATGAATTCCTTTCTTATCTTACGCAATTTCAGTTGGAAATGTTTTTAGCGCGTATTATTGAGACTTCCAAAGTTGAGGAGGTTTTCGGTTTCGCCTTTCCCCTTGGGCTTTATCTTCTTATGTAGTTGAAGATACAACTTGTACTTTTTCATGTACGAATTCTGTAGAAAAGCTAGTACCTCGTTAGCATTGCAACAACACGAAAAGAAAGCGAGATACTGGAATACGAGGGGAAGGAGCAAAGCAGCTCGACCGATAGGGAGAGGACCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGACAGGAGAGTGTATACTCTTGAACTCCGGGAGCGAGACCCTAAAAAAAGTGCAAGAAGCTATGAAGAGTGGTAAACTCTGA

mRNA sequence

ATGGGTCGATCATCGCTCATCCCTCGTGTTCTCTCCCGTGAAGTGATTAATCCGGGTATGCAATCCCTATGGAAAAGAAATAGTTCTTCCATCCCCTCCTGTTCCACCTATCCCTTCACTCCCCAGGGATTCCGTACAGCTAGACAACCACGGTTCATCGCTCGGAGAGAAAGAATAGAAGCAAGCATTTCCCGTTCAGTCGGTAATGAATCAATACGCAGGGAAACTCTCTTCCATGGGAATGGCAAGTCTCGGACAGGCTCATATTGGTTGGGGGGCACAGAAGGGAGAGTGGGCCGGGTTTCAAGCCTGGTTGCATTAAGATTTCAATATCATCCTTCGAGAATCTTTAATCCTCATAGGTACCGGTCACCCAAATTCTCGAGTTTGAATAGGGTCGGGGTTCATCATATTGAAAAGTGGCATGGCTTCGGTTTCGATGAAAATGGAAAGAATAGAACCTACTATCCACCCACGCCAGATCCCCTAAACAACCTACATCCAAAGATGAGAGTTGTTGAAGAGCCTTTTTTTTTAACGGCTTATACCCCAAAAAAAGCTAGTACCTCGTTAGCATTGCAACAACACGAAAAGAAAGCGAGATACTGGAATACGAGGGGAAGGAGCAAAGCAGCTCGACCGATAGGGAGAGGACCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGACAGGAGAGTGTATACTCTTGAACTCCGGGAGCGAGACCCTAAAAAAAGTGCAAGAAGCTATGAAGAGTGGTAAACTCTGA

Coding sequence (CDS)

ATGGGTCGATCATCGCTCATCCCTCGTGTTCTCTCCCGTGAAGTGATTAATCCGGGTATGCAATCCCTATGGAAAAGAAATAGTTCTTCCATCCCCTCCTGTTCCACCTATCCCTTCACTCCCCAGGGATTCCGTACAGCTAGACAACCACGGTTCATCGCTCGGAGAGAAAGAATAGAAGCAAGCATTTCCCGTTCAGTCGGTAATGAATCAATACGCAGGGAAACTCTCTTCCATGGGAATGGCAAGTCTCGGACAGGCTCATATTGGTTGGGGGGCACAGAAGGGAGAGTGGGCCGGGTTTCAAGCCTGGTTGCATTAAGATTTCAATATCATCCTTCGAGAATCTTTAATCCTCATAGGTACCGGTCACCCAAATTCTCGAGTTTGAATAGGGTCGGGGTTCATCATATTGAAAAGTGGCATGGCTTCGGTTTCGATGAAAATGGAAAGAATAGAACCTACTATCCACCCACGCCAGATCCCCTAAACAACCTACATCCAAAGATGAGAGTTGTTGAAGAGCCTTTTTTTTTAACGGCTTATACCCCAAAAAAAGCTAGTACCTCGTTAGCATTGCAACAACACGAAAAGAAAGCGAGATACTGGAATACGAGGGGAAGGAGCAAAGCAGCTCGACCGATAGGGAGAGGACCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGACAGGAGAGTGTATACTCTTGAACTCCGGGAGCGAGACCCTAAAAAAAGTGCAAGAAGCTATGAAGAGTGGTAAACTCTGA

Protein sequence

MGRSSLIPRVLSREVINPGMQSLWKRNSSSIPSCSTYPFTPQGFRTARQPRFIARRERIEASISRSVGNESIRRETLFHGNGKSRTGSYWLGGTEGRVGRVSSLVALRFQYHPSRIFNPHRYRSPKFSSLNRVGVHHIEKWHGFGFDENGKNRTYYPPTPDPLNNLHPKMRVVEEPFFLTAYTPKKASTSLALQQHEKKARYWNTRGRSKAARPIGRGPVGQRKGEVLMPGRSRMTGECILLNSGSETLKKVQEAMKSGKL
Homology
[Close]
BLAST of Cla97C06G119060 vs. NCBI nr
Match: CAA3027943.1 (ribosomal S7 [Olea europaea subsp. europaea])

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-10
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 204 NTRGRSKAARPIGR--GPVGQRKGEVLMPGRSRMTGECILLNSGSETLKKVQEAMKSGK 261
           N R R    R  G+  GPVGQRKG+VL+PGRSRMT ECILLNSGSETL KVQEA+KS +
Sbjct: 19  NERNRLPRNRKEGQVGGPVGQRKGKVLIPGRSRMTRECILLNSGSETLNKVQEALKSAR 77

[Close]
BLAST of Cla97C06G119060 vs. NCBI nr
Match: KAB9092651.1 (hypothetical protein FH972_026962 [Carpinus fangiana])

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-05
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 30  SIPSCSTYPFTPQGFRTARQPRFIARRERIEASISR-SVGNESIRRETLFHGNG--KSRT 89
           +I S     F+ +GFRTARQ RFIARRE IEASISR SVG+     E L  G      +T
Sbjct: 205 TIQSAMEGGFSKRGFRTARQSRFIARREGIEASISRLSVGDFP---EGLQGGYALILRKT 264

Query: 90  GSYWLGGTEGRVGRVSSLVA 107
              + GGTEGRVGRV SL+A
Sbjct: 265 KLSFSGGTEGRVGRVESLIA 281

[Close]
BLAST of Cla97C06G119060 vs. NCBI nr
Match: GEX46072.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-04
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 52  FIARRERIEASISRSVGNESIRRETLFHGNGKSRTGSYWL 92
           F+AR ERIEASISRSVGNESIR  TLFHG GK     YWL
Sbjct: 225 FMARGERIEASISRSVGNESIRGATLFHGKGK-----YWL 259

[Close]
BLAST of Cla97C06G119060 vs. ExPASy TrEMBL
Match: A0A5N6L5L2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026962 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-05
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 30  SIPSCSTYPFTPQGFRTARQPRFIARRERIEASISR-SVGNESIRRETLFHGNG--KSRT 89
           +I S     F+ +GFRTARQ RFIARRE IEASISR SVG+     E L  G      +T
Sbjct: 205 TIQSAMEGGFSKRGFRTARQSRFIARREGIEASISRLSVGDFP---EGLQGGYALILRKT 264

Query: 90  GSYWLGGTEGRVGRVSSLVA 107
              + GGTEGRVGRV SL+A
Sbjct: 265 KLSFSGGTEGRVGRVESLIA 281

The following BLAST results are available for this feature:
BLAST of Cla97C06G119060 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA3027943.17.7e-1069.49ribosomal S7 [Olea europaea subsp. europaea][more]
KAB9092651.15.7e-0555.00hypothetical protein FH972_026962 [Carpinus fangiana][more]
GEX46072.18.2e-0475.00hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of Cla97C06G119060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C06G119060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6L5L22.8e-0555.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026962 PE=4 SV=1[more]
BLAST of Cla97C06G119060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G119060.2Cla97C06G119060.2mRNA