Cla97C06G115050 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G115050
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like
Location	Cla97Chr06: 5978647 .. 5980373 (+)
RNA-Seq Expression	Cla97C06G115050
Synteny	Cla97C06G115050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCATGGTGAAATTAGGAATTGATGAAACTAGAGAGAGATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAAGCGAATAACATTTTGATATTTTCTTAACCAAAGTATGGATTCACATTTCTCCCGAAAATTGCTTTACTTATCATATGATCGTCTTCTATTCCGCTGGGAACAGAGTTTCGGAAATAAAATAAGGGGCACTTCTTAGGTTTGACATAAAATAATTAGTACAGGTGCTGATAAAATCTTAGGTTGTTAATCATTACATTTTGTGCTTAATGGGCTGCCATTGTATTGTTTTTCTCTCCTCAAATTTCTGGTGGGCACTATTAATAGTATGGAGAAGTTGGGCAGAGATTTTTTTTGGAGTGTTGGTGATTACAAGGCCAGTTGTTATTTGGTGAAGTGAAAATCACCTCTCTCCCTCTTTGTAATGGTGGTTTGGGGATAGGGCCTCTTAAAAACAAAATTGTTGCTCTTCTTTCTGAAGGATCTGTGGATTGGGGAAACCCTTCATGAAGTTTTTCCAGAAATTTATAGCTTCTCTTAGGTTGTTGGGTTGATATTAATGAAATGTGGAATTGGGGCATTAGGAGTGGCATTTTAATTGAGAGATCCAAGCTTGGATTGCTTTGGTTGGCAAATTGGATGTTTTTCGCTTGGGGTAAGGTAGTGCTCTAGTGCTTTCTCTACTAGAACACTTCTCTTGAATTTGACTGGAAATAGGTTGACTATCAAACATACGATGACTGGTCAAAATGAGCATAGCTCAACTGACATAAAAATTGTCGTAAAATATTGTTATTTGTTTCGTTGTCGACCCTTCCTATGTTTCTATGATGGTCCAAGAACACACTCATTCTTTCAGCTGTAGAGACATTACGAGCTCAATATATACGAGTGTTATTCCATAAAATAACTTGAATTTCAAATCATTCACTTGCATCACATACATGAAAGCTATGATGAGCGCTCTCTGAACCGTGCAATAACATCACCCATAATACGACTCTCCTACTTAAACTATGTTTAACCCCAGGCCATGTTATTCAATGATGTTGGAAAAATCAATGGCAACGTAACATATCAAAACGTATTGAAAGTTGGTCACCTCTTGAAGGAGGAAAAAAAAAGCATGAGAAATCAAAGGTTGAATTCCCACCCCATCCCACGTATTAAAAAAAAGAAAATGAGTGGTATATTTGGAATTTTAAATTCCTTTAGAAGCCCTAACTGGTAGGCCCTTGAAAGGCAAAGGCAAGATTCTTTGGAAGTTTGTTGTTGGAGCCACTTTATTGGGTGGACCTTTGAAGATAAGTATCCTACTCTTTAATAATTTTGGAATCCCAAAGGCTTTTTTATTCTCCTCGCTTTTGAAGGTTGGAATCCCAAAGAAGGTTAGAAGTTTTCGCCCGACATTTTTGCATGTGAAAATCAACACTTTGGATCACATTCAGAGGCGTTCCCCTGTGTATTTGGCGTTGCAATGGTGTGTTTGTGCAGAGGAGATTCAAAGGATCTTGATAATTTATTTTGGAATTGTCAGTTCGTGCAATTGA

mRNA sequence

TTTTTCATGGTGAAATTAGGAATTGATGAAACTAGAGAGAGATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTTGGAATCCCAAAGAAGGTTAGAAGTTTTCGCCCGACATTTTTGCATGTGAAAATCAACACTTTGGATCACATTCAGAGGCGTTCCCCTGTGTATTTGGCGTTGCAATGGTGTGTTTGTGCAGAGGAGATTCAAAGGATCTTGATAATTTATTTTGGAATTGTCAGTTCGTGCAATTGA

Coding sequence (CDS)

ATGGCGAGCGTAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCAGTGGTAATGTCCTCATCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTGGCTGTGGCATACCCTCCATTGCAAACACAAGGATTCCAACCCGGGGAAATGCCTCCACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTTGGAATCCCAAAGAAGGTTAGAAGTTTTCGCCCGACATTTTTGCATGTGAAAATCAACACTTTGGATCACATTCAGAGGCGTTCCCCTGTGTATTTGGCGTTGCAATGGTGTGTTTGTGCAGAGGAGATTCAAAGGATCTTGATAATTTATTTTGGAATTGTCAGTTCGTGCAATTGA

Protein sequence

MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVAVAYPPLQTQGFQPGEMPPQRPSSHSMRPLPVGIPKKVRSFRPTFLHVKINTLDHIQRRSPVYLALQWCVCAEEIQRILIIYFGIVSSCN

Homology

[Close]

BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_038893587.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.4e-07
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS V+AAGDPIPTSAV+MSSSKHIANKCRSENVA
Sbjct: 1  MASAVNAAGDPIPTSAVLMSSSKHIANKCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. NCBI nr
Match: KAG6593937.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. NCBI nr
Match: XP_004135555.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_023175 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-06
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIA KCRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          M+S VDA G+PIPTSAV+ +S+KHI  +C  ENVA
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL
Match: A0A6J1KIR7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111494823 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL
Match: A0A6J1EWD6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111436739 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL
Match: A0A6J1KXR2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111499155 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL
Match: A0A6J1H2X4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111459990 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIAN CRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL
Match: A0A5A7UKJ4 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00070 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          MAS VDAAGDPIPTSAV+MSSSKHIA KCRSENVA
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVA 35

[Close]

BLAST of Cla97C06G115050 vs. TAIR 10
Match: AT5G18800.1 (Cox19-like CHCH family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          M+S VDA G+PIPTSAV+ +S+KHI  +C  ENVA
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVA 35

[Close]

BLAST of Cla97C06G115050 vs. TAIR 10
Match: AT5G18800.2 (Cox19-like CHCH family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1  MASVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          M+S VDA G+PIPTSAV+ +S+KHI  +C  ENVA
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVA 35

[Close]

BLAST of Cla97C06G115050 vs. TAIR 10
Match: AT3G06310.1 (Cox19-like CHCH family protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.3e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 3  SVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          + VD  G+PIPTSAV+ +S+KHI  +C  EN+A
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMA 37

[Close]

BLAST of Cla97C06G115050 vs. TAIR 10
Match: AT3G06310.2 (Cox19-like CHCH family protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.3e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 3  SVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          + VD  G+PIPTSAV+ +S+KHI  +C  EN+A
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMA 37

[Close]

BLAST of Cla97C06G115050 vs. TAIR 10
Match: AT3G06310.3 (Cox19-like CHCH family protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.3e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 3  SVVDAAGDPIPTSAVVMSSSKHIANKCRSENVA 36
          + VD  G+PIPTSAV+ +S+KHI  +C  EN+A
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMA 37

The following BLAST results are available for this feature:

BLAST of Cla97C06G115050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893587.1	8.4e-07	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa h...	[more]
KAG6593937.1	1.1e-06	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbi...	[more]
XP_022958837.1	1.1e-06	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022930219.1	1.1e-06	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_004135555.1	2.4e-06	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus]...	[more]

BLAST of Cla97C06G115050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE7	1.8e-04	62.86	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]

BLAST of Cla97C06G115050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIR7	5.3e-07	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1EWD6	5.3e-07	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1KXR2	5.3e-07	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1H2X4	5.3e-07	91.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A5A7UKJ4	1.2e-06	91.43	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis m...	[more]

BLAST of Cla97C06G115050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18800.1	1.3e-05	62.86	Cox19-like CHCH family protein	[more]
AT5G18800.2	1.3e-05	62.86	Cox19-like CHCH family protein	[more]
AT3G06310.1	9.3e-04	54.55	Cox19-like CHCH family protein	[more]
AT3G06310.2	9.3e-04	54.55	Cox19-like CHCH family protein	[more]
AT3G06310.3	9.3e-04	54.55	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G115050.2	Cla97C06G115050.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I