Cla97C06G112940 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G112940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Protein Ycf2
Location	Cla97Chr06: 3998305 .. 3999191 (+)
RNA-Seq Expression	Cla97C06G112940
Synteny	Cla97C06G112940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTTGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTAAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTACCTCAAAACTAAGTATTATCTAAATAAAAAAATTTAAAAAAAAAATTCTATGACTAGAGCCAACCAGGAAAATCTTTCCAAATTAGTTTGGGATGTCACACCCTGAGGAATTTTAGAAATACCTCAAAAAGAAAGAGAAATAAGAATAAAATAAATTTGATTTACTAAGTTCTTGGTGGAAATTACAGATTCACACCTAGATAGTTGAATAAGTATTCACTATCAAAATTGTTTCTTTCTTTTCTTTATTACTTTGTGCATTTCTTGGCAAATACTTAATTTAGTAGAATAGCTTCTACTAGTTGGCAACGAAAAACTCATCTCATTTAATGTAGTGGGAGACATTAAAATGTCGTTCCTTTATGCTGAATATGGTGCTTTTATCACCATAAGAGAAATTCAATTTCTTCAGACTTTATTACTAAATAATTCATAGAGTATGAATGTTTTTTTTAGTGATAAGACATGTTTTCAAAATTGTTTGAAAATATGTTCAGCTTTAAATAATTATATATATATATATATATATTTTTTGTGTTAAAAGTTAACACATTTGAATACAAAACTGATTATTTTCTCCTTAAAGGATACTTGTCTTTGGCTTTTAGGTGACAGTTAAGAGTAATGCTCTAAGAGTGAGTTAA

mRNA sequence

ATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTTGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTGACAGTTAAGAGTAATGCTCTAAGAGTGAGTTAA

Coding sequence (CDS)

ATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTTGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTGACAGTTAAGAGTAATGCTCTAAGAGTGAGTTAA

Protein sequence

MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVTVKSNALRVS

Homology

[Close]

BLAST of Cla97C06G112940 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1921 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1980

Query: 61   GLV 64
            GLV
Sbjct: 1981 GLV 1983

[Close]

BLAST of Cla97C06G112940 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1921 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1980

Query: 61   GLV 64
            GLV
Sbjct: 1981 GLV 1983

[Close]

BLAST of Cla97C06G112940 vs. NCBI nr
Match: QJR53001.1 (hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical protein RF2 [Herpetospermum pedunculosum])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1923 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1982

Query: 61   GLV 64
            GLV
Sbjct: 1983 GLV 1985

[Close]

BLAST of Cla97C06G112940 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1923 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1982

Query: 61   GLV 64
            GLV
Sbjct: 1983 GLV 1985

[Close]

BLAST of Cla97C06G112940 vs. NCBI nr
Match: YP_009752033.1 (Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys macranthus] >QIT05274.1 Ycf2 protein [Cionosicys macranthus] >QIT05292.1 Ycf2 protein [Cionosicys macranthus])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1943 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 2002

Query: 61   GLV 64
            GLV
Sbjct: 2003 GLV 2005

[Close]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-30
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSY
Sbjct: 1758 MKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSY 1817

Query: 61   GLV 64
            GLV
Sbjct: 1818 GLV 1820

[Close]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-30
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSY
Sbjct: 1939 MKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSY 1998

Query: 61   GLV 64
            GLV
Sbjct: 1999 GLV 2001

[Close]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-29
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSY
Sbjct: 1937 MKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSY 1996

Query: 61   GLV 64
            G V
Sbjct: 1997 GFV 1999

[Close]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-29
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSY
Sbjct: 1935 MKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSY 1994

Query: 61   GLV 64
            G V
Sbjct: 1995 GFV 1997

[Close]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot
Match: Q2L949 (Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-29
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPGPDEKNGITSY
Sbjct: 1935 MKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSY 1994

Query: 61   GLV 64
            G V
Sbjct: 1995 GFV 1997

[Close]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1919 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1978

Query: 61   GLV 64
            GLV
Sbjct: 1979 GLV 1981

[Close]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1918 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1977

Query: 61   GLV 64
            GLV
Sbjct: 1978 GLV 1980

[Close]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1921 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1980

Query: 61   GLV 64
            GLV
Sbjct: 1981 GLV 1983

[Close]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL
Match: A0A6H0ESM3 (Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1921 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1980

Query: 61   GLV 64
            GLV
Sbjct: 1981 GLV 1983

[Close]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL
Match: A0A410HFC5 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY
Sbjct: 1921 MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 1980

Query: 61   GLV 64
            GLV
Sbjct: 1981 GLV 1983

[Close]

BLAST of Cla97C06G112940 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 120.6 bits (301), Expect = 5.4e-28
Identity = 57/63 (90.48%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKK TILLYLLSCSAGSV QDLWSLP PDEKN ITSY
Sbjct: 1933 MKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSY 1992

Query: 61   GLV 64
            G V
Sbjct: 1993 GFV 1995

[Close]

BLAST of Cla97C06G112940 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 120.6 bits (301), Expect = 5.4e-28
Identity = 57/63 (90.48%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1    MKKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSY 60
            MKKKSCNEG SYLYKWYFELGTSMKK TILLYLLSCSAGSV QDLWSLP PDEKN ITSY
Sbjct: 1933 MKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPVPDEKNRITSY 1992

Query: 61   GLV 64
            G V
Sbjct: 1993 GFV 1995

The following BLAST results are available for this feature:

BLAST of Cla97C06G112940 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04093.1	3.9e-28	100.00	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
YP_009752370.1	3.9e-28	100.00	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]
QJR53001.1	3.9e-28	100.00	hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical ...	[more]
YP_010131137.1	3.9e-28	100.00	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009752033.1	3.9e-28	100.00	Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys ma...	[more]

BLAST of Cla97C06G112940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08973	9.6e-30	96.83	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
Q0ZIV6	9.6e-30	96.83	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
B1A978	2.8e-29	95.24	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
A0ZZ78	2.8e-29	95.24	Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1	[more]
Q2L949	2.8e-29	95.24	Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Cla97C06G112940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2F1	1.9e-28	100.00	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	1.9e-28	100.00	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	1.9e-28	100.00	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ESM3	1.9e-28	100.00	Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1	[more]
A0A410HFC5	1.9e-28	100.00	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]

BLAST of Cla97C06G112940 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	5.4e-28	90.48	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	5.4e-28	90.48	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR33078:SF64	PROTEIN YCF2	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G112940.1	Cla97C06G112940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity