Cla97C06G109840 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G109840
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	upstream activation factor subunit spp27-like
Location	Cla97Chr06: 521212 .. 523249 (+)
RNA-Seq Expression	Cla97C06G109840
Synteny	Cla97C06G109840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATGTAAAAAATAGGAATGAAATAAGCTTAATTTTTTAAAACAAAAATAAAAAATAAAATGGTCACCACCTAAAATTTGGAATCACTACGCAACATAAACATATGTAATGTGAGTTATGTCACAAATCAATTTATTGAAGTTAGATTTTCCCAAAGTTGGGCCAGAGGCCCACAGTCCATCACTGTGGACCCAAACCAAGGGCAGCCCAATTCCTTCAGCTCATTCTCCGCTTAAAAACTCCCGTTTCCATTTCTTCCAACCTCAGTCGAGCAAAAGCGGCAAAAACCCCTGCACTCACCGTTGTCTTCGTCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAGAACCCTCTTAGATTCTCTCAAATCTGCCACTCAAGCTTACTCTTCTACTCCTGCCGTCGCTCGCAAGGGGAAGCTAAAAGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGACTCGTCCGACGGGGATTCTTAAGGCCGTCCAAGTTTCCCCGACTCTCGCTGGCTTCCTCGGCATGTCCGAGACTTCGCGTGCCGAAGCCGTCAAGCAAATATGGGCCTACATCAAGCTGAATAACCTCCAGGTTACTTTGATTTCTCTATTGTTTTTACTGATATGGTCTCTTTTTTTTTTTTTTTTTTAGTATCGTTGTTCTAGTTCCTTGTTTCCTGCAATCTCTTCGTTTGCCTAGTTAATGTCTTCTTGATTTTAACTTAGTTTAGTGCTTGAAGCTTTGGGTGTTGTGTTCATTTCATAGAGTATCAAATGTTAGTTCTCTGTAAGCGGATTCCTTCTTTCAGTCCTCACCTGCTCAATCGAAGGTATCTGAAATGGAAGTTCCGAATTTGAAACTTAGGTTAAATTATAGGTGATCCCCCGCTATTTTATAGTTCATGAATCAAATAATCTATGCTTGTTCCCAGCCATGAATGCATTTATTCAGCAATGTCGTTTAAAGGATTGAATGCTATTGCGTGACCTTTTCTTTTCAAAAGGATTTGGGTTTGAGCTCTGCTCTGAAAAGCTAGCTGCGACACAGAGCTGGGAGCACCTACCCAAATCCCCGTGATGTCCAATTTTTGGGTATAAATACTTTCATTGAAGTTAATGAGAAGCTAAACCTGGATTTACTGTCTCTTGATCATATGAAATGGTTATGTAGGCTATGAGTTTATGAAGGGTGTGTGAATATGCAGATGCCCAAATTATCTAGCAAAAGAAGCTTGAACTTCTCTCACCTTGCCCTACAATGTGATTTCTTTTTTTTCCCTTTTTGAAACACCCTAGAAGTGAAGTGAACTACTTTAGCTTGTCACTGCTCATCAATTGACATTGTGGTTAAATGAGAATGAAAATGTTGGTAAATGTATCAAATATATTGTTGGTGTTGAGTAGTTAGAACAGTAGTCTCATGTCTGCCAGACCCAAACCAATTAGTATTCTATTAATGGTGTTAAACTGTAGAGATCAAGTGTAATCCTCAATGTATATGAGCTGAAGTTAGAATTTAACATAGTTTCACTTTTTTTTTTTCTTTTTTTTTTTTTTTCTTTTGGAGTTCATAAGATTTTGCTGATTGATACATACACATATATATGCACATTTTGGTGTGCAGAGCCCAGCTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGTCTATATTTGATGGGAGAGAGAAAGTGGGATTCTTAGAGATTGGAAAATTGTTATCCCCTCATTTTGTGAAATCTAGTTAATCATAAACTTCCAAGTGCATGCGTTGACTTAGTTGTTCTAACAGTTCTCTCTCAACCTGTCTTCCAAATCTATGATGTTGTTTTGTTGTGCTGTGTTTGGCCAATACTATGACTTCACTTTACTCTTTGGTTTTACTCTGGTTTAAGAGAAGGGGATGTTTCTTACAAGATATTGTTGTTCATTAGTATTCTATAATTAATTAAGGTAGCTTCTGTCTAAATTTTACTTTTAAAAATCACTTTTTTTGTA

mRNA sequence

AATTAATGTAAAAAATAGGAATGAAATAAGCTTAATTTTTTAAAACAAAAATAAAAAATAAAATGGTCACCACCTAAAATTTGGAATCACTACGCAACATAAACATATGTAATGTGAGTTATGTCACAAATCAATTTATTGAAGTTAGATTTTCCCAAAGTTGGGCCAGAGGCCCACAGTCCATCACTGTGGACCCAAACCAAGGGCAGCCCAATTCCTTCAGCTCATTCTCCGCTTAAAAACTCCCGTTTCCATTTCTTCCAACCTCAGTCGAGCAAAAGCGGCAAAAACCCCTGCACTCACCGTTGTCTTCGTCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAGAACCCTCTTAGATTCTCTCAAATCTGCCACTCAAGCTTACTCTTCTACTCCTGCCGTCGCTCGCAAGGGGAAGCTAAAAGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGACTCGTCCGACGGGGATTCTTAAGGCCGTCCAAGTTTCCCCGACTCTCGCTGGCTTCCTCGGCATGTCCGAGACTTCGCGTGCCGAAGCCGTCAAGCAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGTCTATATTTGATGGGAGAGAGAAAGTGGGATTCTTAGAGATTGGAAAATTGTTATCCCCTCATTTTGTGAAATCTAGTTAATCATAAACTTCCAAGTGCATGCGTTGACTTAGTTGTTCTAACAGTTCTCTCTCAACCTGTCTTCCAAATCTATGATGTTGTTTTGTTGTGCTGTGTTTGGCCAATACTATGACTTCACTTTACTCTTTGGTTTTACTCTGGTTTAAGAGAAGGGGATGTTTCTTACAAGATATTGTTGTTCATTAGTATTCTATAATTAATTAAGGTAGCTTCTGTCTAAATTTTACTTTTAAAAATCACTTTTTTTGTA

Coding sequence (CDS)

ATGTCACAAATCAATTTATTGAAGTTAGATTTTCCCAAAGTTGGGCCAGAGGCCCACAGTCCATCACTGTGGACCCAAACCAAGGGCAGCCCAATTCCTTCAGCTCATTCTCCGCTTAAAAACTCCCGTTTCCATTTCTTCCAACCTCAGTCGAGCAAAAGCGGCAAAAACCCCTGCACTCACCGTTGTCTTCGTCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAGAACCCTCTTAGATTCTCTCAAATCTGCCACTCAAGCTTACTCTTCTACTCCTGCCGTCGCTCGCAAGGGGAAGCTAAAAGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGACTCGTCCGACGGGGATTCTTAAGGCCGTCCAAGTTTCCCCGACTCTCGCTGGCTTCCTCGGCATGTCCGAGACTTCGCGTGCCGAAGCCGTCAAGCAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGTCTATATTTGATGGGAGAGAGAAAGTGGGATTCTTAGAGATTGGAAAATTGTTATCCCCTCATTTTGTGAAATCTAGTTAA

Protein sequence

MSQINLLKLDFPKVGPEAHSPSLWTQTKGSPIPSAHSPLKNSRFHFFQPQSSKSGKNPCTHRCLRRSKMASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS

Homology

[Close]

BLAST of Cla97C06G109840 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-57
Identity = 125/146 (85.62%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKA---AVSGQKSVAGPKKE 128
           MASG  NGTRFFRGCRTL DSLKS TQAYSSTPAV+ KGKLKA   AVSGQKSVAGPKK 
Sbjct: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R TGI K+  VSP LAGFLGMSETSR+EAVKQIWAYIKLNNLQSPADKRQINCDEKLK
Sbjct: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGREKVGFLEIGKLL+PHFVKSS
Sbjct: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 145

[Close]

BLAST of Cla97C06G109840 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 7.0e-54
Identity = 117/146 (80.14%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG++K   AA S +KS AG KKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R  GILK+VQVSP LAGFLGMSE+SRAEAVKQIW+YIKLNNLQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGRE VGFLEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKSS 146

[Close]

BLAST of Cla97C06G109840 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-53
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 62  RCLRRSKMASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKS 121
           R L RSKMASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KGKLK   AA S + S
Sbjct: 49  RRLPRSKMASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNS 108

Query: 122 VAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQI 181
            AG KKE  R  GI K+VQVSP LAGFLGMSE+SR EAVKQIW+YIKLNNLQ+PA+KRQI
Sbjct: 109 EAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQI 168

Query: 182 NCDEKLKSIFDGREKVGFLEIGKLLSPHFVKSS 212
           NCDEKLK+IFDGRE VG LEIGKLLS HFVKSS
Sbjct: 169 NCDEKLKAIFDGRENVGILEIGKLLSAHFVKSS 201

[Close]

BLAST of Cla97C06G109840 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.0 bits (554), Expect = 7.7e-53
Identity = 116/146 (79.45%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R  GILK+VQVSP LAGFLGMSE+SR EAVKQIW+YIKLNNLQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Cla97C06G109840 vs. NCBI nr
Match: XP_023000110.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 215.3 bits (547), Expect = 5.0e-52
Identity = 114/146 (78.08%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Cla97C06G109840 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-10
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 91  KSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSE 150
           K AT+  +       K   K    G++     + +      + K +++SP LA FLG+ +
Sbjct: 76  KRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQ 135

Query: 151 TSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFD 190
            SR + VK++W YIK ++LQ P DKR I CD+KLKS+F+
Sbjct: 136 LSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

[Close]

BLAST of Cla97C06G109840 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 105 RKGKLKAAVSGQKSVAGPKK--EPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWA 164
           RKGK     S  KS    KK   P   +  ++ V +S  L  FLG  E  R + VK IW 
Sbjct: 96  RKGK-----SESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQ 155

Query: 165 YIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPH 207
           YIK ++LQ+P D+R+I CDEK++ IF   +K+    + KLL+ H
Sbjct: 156 YIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of Cla97C06G109840 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 84  RTLLDSLK-SATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTG-----ILKAVQ 143
           R+L D LK +AT A   T  +    +            G   E  + T        + V 
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 144 VSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFL 203
           +S +LA  LG  E +R E V+++WAYIK +NLQ+P +K++I CDEKL+ I    +     
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 204 EIGKLLSPHFVK 210
           E+ K+L+ H  +
Sbjct: 186 EMHKILASHMTE 195

[Close]

BLAST of Cla97C06G109840 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 103 VARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWA 162
           V RKG     V   K +  P++ P R        ++S   A  LG+ E +R + V  +W 
Sbjct: 183 VTRKGDQSVDV---KIMLYPEEHPER-------YKLSKAFANILGIREGTRPDIVSYLWQ 242

Query: 163 YIKLNNLQSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLS 205
           YIK + LQ   +KR INCD+ L+ +F+  +++ F  I +L++
Sbjct: 243 YIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYFPRIPELMN 273

[Close]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.4e-52
Identity = 114/146 (78.08%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA S +KS AG KKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 5.4e-52
Identity = 113/146 (77.40%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGL+NGTR FRGCRTLLDSLKS TQAYSS  AV+ KG+LK   AA + +KS AG KKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
             R  GI K+VQVSP LAGFLGMSE+SR+EAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKSS 212
           +IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 109/145 (75.17%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGLSNGTRFFRGC+TLLDSLK  TQAYSSTPAV+ K KLK   AAVSGQKS A PK++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
                GI+K+++VSPTLAGFLG SE SRA+A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKS 211
           +IF GREKVG LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 109/145 (75.17%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGLSNGTRFFRGC+TLLDSLK  TQAYSSTPAV+ K KLK   AAVSGQKS A PK++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
                GI+K+++VSPTLAGFLG SE SRA+A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKS 211
           +IF GREKVG LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 69  MASGLSNGTRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLK---AAVSGQKSVAGPKKE 128
           MASGLSNGTRFF+GCRTLLDSLKS TQAYSSTP V+ K  LK   AAVSGQKS   PKK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 129 PTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 188
                G+LK  +VSPTLAGFLG SE +R EAVKQIW YIKLNNLQ+P DKRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 189 SIFDGREKVGFLEIGKLLSPHFVKS 211
           +IF GREKVG LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

[Close]

BLAST of Cla97C06G109840 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-31
Identity = 73/135 (54.07%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 80  FRGCRTLLDSLKSATQAY---SSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAV 139
           FRG R+LL     AT +     ST   A K K KA    +     P K+  R TGI K  
Sbjct: 9   FRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVT 68

Query: 140 QVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGF 199
            VSP LA FLG  ETSR +A+K IW YIK ++LQ+PADKR+I CDE LK IF+G++KVGF
Sbjct: 69  PVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGF 128

Query: 200 LEIGKLLSPHFVKSS 212
           LEI KLLSPHFVK++
Sbjct: 129 LEISKLLSPHFVKTA 143

[Close]

BLAST of Cla97C06G109840 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-25
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 130 TGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFD 189
           TGILK V VS  LA F+G +E SR  AVK+IW YIKLNNLQ+P +KR+I CDE+LK+IF 
Sbjct: 28  TGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFS 87

Query: 190 GREKVGFLEIGKLLSPHFVKSS 212
           G++ VGFLEI KLLS HF KS+
Sbjct: 88  GKDTVGFLEISKLLSQHFPKSA 109

[Close]

BLAST of Cla97C06G109840 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-22
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 110 KAAVSGQKSVAGPKKEPTRPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNL 169
           KAA     +VAG  K      GI K   VS  LA F G  E +R  A+K++W Y+KL+NL
Sbjct: 17  KAATVEAVTVAGEGK------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNL 76

Query: 170 QSPADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFVKS 211
           Q+PA+K++I+CD+KLK+IFDG++KVG  EI KLLSPHF KS
Sbjct: 77  QNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of Cla97C06G109840 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-21
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 77  TRFFRGCRTLLDSLKSATQAYSSTPAVARKGKLKAAVSGQKSVAGPKKEPTRPTGILKAV 136
           T  FR   T L SL+     ++S PA A+   ++A  S  +S          P GI+K  
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPA-AKLRLVRAVTSATESSEPTATNKRVPRGIMKPR 75

Query: 137 QVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQSPADKRQINCDEKLKSIFDGREKVGF 196
            VSP +   + + E +R +A+K+IWAYIK ++LQ P +KR+I CDEKLK IF+GR++VGF
Sbjct: 76  PVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGF 135

Query: 197 LEIGKLLSPHFV 209
           LEI KL+ PHF+
Sbjct: 136 LEIAKLIGPHFL 141

[Close]

BLAST of Cla97C06G109840 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 118 SVAGPKKEPT------RPTGILKAVQVSPTLAGFLGMSETSRAEAVKQIWAYIKLNNLQS 177
           S A    +PT       P GI+K   VS  +   +G+ E  R +A+K+IWAYIK ++LQ 
Sbjct: 48  SAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQD 107

Query: 178 PADKRQINCDEKLKSIFDGREKVGFLEIGKLLSPHFV 209
           P +KR I CDEKLK IF+G+E+VGFLEI KL+ PHF+
Sbjct: 108 PQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

The following BLAST results are available for this feature:

BLAST of Cla97C06G109840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906873.1	1.0e-57	85.62	upstream activation factor subunit spp27-like [Benincasa hispida]	[more]
KAG6593744.1	7.0e-54	80.14	hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514456.1	3.5e-53	77.78	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593745.1	7.7e-53	79.45	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000110.1	5.0e-52	78.08	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]

BLAST of Cla97C06G109840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	6.4e-10	36.36	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	1.9e-09	40.38	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	1.2e-08	32.58	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9P7S3	1.6e-05	32.35	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Cla97C06G109840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHF5	2.4e-52	78.08	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	5.4e-52	77.40	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3DMJ2	6.0e-51	75.17	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	6.0e-51	75.17	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A0A0KCY9	4.0e-47	73.79	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]

BLAST of Cla97C06G109840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	6.8e-31	54.07	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	7.3e-25	65.85	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.6e-22	53.47	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.7e-21	43.94	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.9e-20	49.48	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 132..211 e-value: 4.3E-30 score: 116.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 135..207 e-value: 6.1E-30 score: 102.9
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 131..209 score: 21.680744
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 127..211 e-value: 4.7E-28 score: 99.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 129..209
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 75..210
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 75..210
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 136..207 e-value: 2.19912E-34 score: 115.333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G109840.2	Cla97C06G109840.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus