Cla97C05G102870 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G102870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	SKP1-like protein
Location	Cla97Chr05: 31057680 .. 31058165 (+)
RNA-Seq Expression	Cla97C05G102870
Synteny	Cla97C05G102870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGACTGTTAACCTAAAGTCATCTGAGAACGAGATTTTCAAGGTAAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTTGAAGAGGATGAGCCCAATGGCGATGAGATTGTGATTCCGCTGCCGAATATTAGTGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGACGCACGTCGAAAAAAAATTAACAGAGGAAGCGCTTAAAGATTGGGAAAGTAAGTTCGTGGATGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCGGCTAATTACCTGGAAGTCACCGATTTGTTCCATCGAACTTGCCAAAGCGTCGCTGATAAGATTGCCGGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAACGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAATCCACTAGCGGTAGCAGTAGCGGCAGTAAATAG

mRNA sequence

ATGAGGACTGTTAACCTAAAGTCATCTGAGAACGAGATTTTCAAGGTAAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTTGAAGAGGATGAGCCCAATGGCGATGAGATTGTGATTCCGCTGCCGAATATTAGTGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGACGCACGTCGAAAAAAAATTAACAGAGGAAGCGCTTAAAGATTGGGAAAGTAAGTTCGTGGATGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCGGCTAATTACCTGGAAGTCACCGATTTGTTCCATCGAACTTGCCAAAGCGTCGCTGATAAGATTGCCGGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAACGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAATCCACTAGCGGTAGCAGTAGCGGCAGTAAATAG

Coding sequence (CDS)

ATGAGGACTGTTAACCTAAAGTCATCTGAGAACGAGATTTTCAAGGTAAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTTGAAGAGGATGAGCCCAATGGCGATGAGATTGTGATTCCGCTGCCGAATATTAGTGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGACGCACGTCGAAAAAAAATTAACAGAGGAAGCGCTTAAAGATTGGGAAAGTAAGTTCGTGGATGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCGGCTAATTACCTGGAAGTCACCGATTTGTTCCATCGAACTTGCCAAAGCGTCGCTGATAAGATTGCCGGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAACGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAATCCACTAGCGGTAGCAGTAGCGGCAGTAAATAG

Protein sequence

MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWIVTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFESTSGSSSGSK

Homology

[Close]

BLAST of Cla97C05G102870 vs. NCBI nr
Match: XP_038892847.1 (SKP1-like protein 14 [Benincasa hispida])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENE+FKVREEIAKQSVVVRNFLEEDE N DE+ IPLPNISGR+L MVIEWI
Sbjct: 1   MRTVNLRSSENEVFKVREEIAKQSVVVRNFLEEDESNSDEVTIPLPNISGRILAMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
           V HVE+KLTE ALKDW+ KFV DLDLD LFELIMAANYLEVTDLFH+TCQSVADKIAGKS
Sbjct: 61  VKHVEEKLTETALKDWQIKFVGDLDLDSLFELIMAANYLEVTDLFHQTCQSVADKIAGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFESTSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFES +GS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFESGTGSTSGSK 161

[Close]

BLAST of Cla97C05G102870 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 136/162 (83.95%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]

BLAST of Cla97C05G102870 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.2e-67
Identity = 134/161 (83.23%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGS 161
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SG+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGT 161

[Close]

BLAST of Cla97C05G102870 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.2e-67
Identity = 134/161 (83.23%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGS 161
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SG+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGT 161

[Close]

BLAST of Cla97C05G102870 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 9.4e-67
Identity = 136/164 (82.93%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MR VNL+SSENEIFKV EE+AKQSVVVR FLEED+ N DEI IPLPNISGR+LGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
           V HVE+KL EEAL  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE---STSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE   S SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.1e-31
Identity = 75/173 (43.35%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEW 60
           +R + LKSS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IVTHVE---------------------KKLTEEALKDWESKFVDDLDLDLLFELIMAANY 120
              HVE                        ++E LK W+S+F+  +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFI-KVDQGTLFDLILAANY 123

Query: 121 LEVTDLFHRTCQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ+VAD I GK+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-30
Identity = 77/171 (45.03%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 2   RTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEWI 61
           + + LKSS+ E F+V E +A +S  +R+ +E+D   NG    IPLPN++ ++L  VIE+ 
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNG----IPLPNVNSKILSKVIEYC 67

Query: 62  VTHVE------KKLTEEA--------------LKDWESKFVDDLDLDLLFELIMAANYLE 121
             HV        K  ++A              LK+W++ FV  +D   LF+LI+AANYL 
Sbjct: 68  NKHVHAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFV-KVDQATLFDLILAANYLN 127

Query: 122 VTDLFHRTCQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           +  L   TCQ+VAD I GK+PEEIR+ FNI NDFTPEEE EIRR+N W FE
Sbjct: 128 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-30
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 2   RTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEWI 61
           + + LKSS+ E F+V E +A +S  + + +E+D   NG    +PLPN++ ++L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  VTHVE-----------KKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTC 121
             HVE              +++ LK W++ F+  +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFM-KIDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q+VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot
Match: Q9WTX5 (S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-30
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEE--DEPNGDEIVIPLPNISGRMLGMVIE 60
           M T+ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVTHVE----------KKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRT 120
           W   H +          K+   + +  W+ +F+  +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I GK+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot
Match: Q6PEC4 (S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-30
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEE--DEPNGDEIVIPLPNISGRMLGMVIE 60
           M T+ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVTHVE----------KKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRT 120
           W   H +          K+   + +  W+ +F+  +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I GK+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.4e-68
Identity = 136/162 (83.95%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.5e-67
Identity = 134/161 (83.23%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGS 161
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SG+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGT 161

[Close]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.5e-67
Identity = 134/161 (83.23%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRTVNL+SSENEIFKV EE+AKQSVVVRNFLEED  NGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
             HVE+KL EE L  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-STSGSSSGS 161
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE S SGS+SG+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGT 161

[Close]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.5e-67
Identity = 136/164 (82.93%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MR VNL+SSENEIFKV EE+AKQSVVVR FLEED+ N DEI IPLPNISGR+LGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
           V HVE+KL EEAL  W++KF++DLDLDLLFELIMAANYLEVTDLFH TCQ VADKI+GKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE---STSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE   S SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL
Match: A0A6J1JGP3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.7e-51
Identity = 101/154 (65.58%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWI 60
           MRT  LKSS+N+IFKV EEIA QS V++NFLE+   + DEIVIPLPN+ GR+L M+IEW+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60

Query: 61  VTHVEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKS 120
           V HV+++LT+E ++DWE+KF++DL++++  EL+MAANYLEV  L HRTCQS+AD I+GKS
Sbjct: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFESTS 155
           PEEIRRI NIT+DFTPEEEAEIRRQN WV   ++
Sbjct: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPST 154

[Close]

BLAST of Cla97C05G102870 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-32
Identity = 75/173 (43.35%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 1   MRTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEW 60
           +R + LKSS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IVTHVE---------------------KKLTEEALKDWESKFVDDLDLDLLFELIMAANY 120
              HVE                        ++E LK W+S+F+  +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFI-KVDQGTLFDLILAANY 123

Query: 121 LEVTDLFHRTCQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ+VAD I GK+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cla97C05G102870 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 2   RTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEWI 61
           + + LKSS+ E F+V E +A +S  + + +E+D   NG    +PLPN++ ++L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  VTHVE-----------KKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTC 121
             HVE              +++ LK W++ F+  +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFM-KIDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q+VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Cla97C05G102870 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 70/163 (42.94%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 2   RTVNLKSSENEIFKVREEIAKQSVVVRNFLEED-EPNGDEIVIPLPNISGRMLGMVIEWI 61
           + + LKSS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++G +L  VIE+ 
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG----IPLPNVTGAILAKVIEYC 65

Query: 62  VTHVEK------------KLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRT 121
             HVE                 + LK+W+S+FV  +D   LF+LI+AANYL +  L   T
Sbjct: 66  KKHVEAAAEAGGDKDFYGSAENDELKNWDSEFV-KVDQPTLFDLILAANYLNIGGLLDLT 125

Query: 122 CQSVADKIAGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VAD++ GK+PE++R  FNI ND+TPEEEAE+R +N W FE
Sbjct: 126 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Cla97C05G102870 vs. TAIR 10
Match: AT2G03170.1 (SKP1-like 14 )

HSP 1 Score: 127.9 bits (320), Expect = 7.5e-30
Identity = 63/146 (43.15%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 6   LKSSENEIFKVREEIAKQSVVVRNFLEEDEPNGDEIVIPLPNISGRMLGMVIEWIVTHVE 65
           L SS+ E F+V E +A++  +V + +E+D    +   +PL N++G++L +V+E+   HV 
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  KKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKIAGKSPEEIR 125
            + ++E  K W+ +F+   D   +F+L++AANYL +  L   + Q+VAD+I  K+PEEIR
Sbjct: 68  DEESDE-FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 RIFNITNDFTPEEEAEIRRQNAWVFE 152
            IFNI NDFTPEEEA +R++NAW FE
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAWAFE 149

[Close]

BLAST of Cla97C05G102870 vs. TAIR 10
Match: AT3G21850.1 (SKP1-like 9 )

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-29
Identity = 68/155 (43.87%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 2   RTVNLKSSENEIFKVREEIAKQSVVVRNFLEEDE--PNGDEIVIPLPNISGRMLGMVIEW 61
           + + LKSS+   F+V EE A+Q  ++   + E++   NG    IPLPN++G++L MVIE+
Sbjct: 4   KKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNG----IPLPNVTGKILAMVIEY 63

Query: 62  IVTH---VEKKLTEEALKDWESKFVDDLDLDLLFELIMAANYLEVTDLFHRTCQSVADKI 121
              H        +++ LK W+ +F++  D   +F+LI AANYL +  LF   CQ+VA+ I
Sbjct: 64  CNKHHVDAANPCSDDDLKKWDKEFMEK-DTSTIFDLIKAANYLNIKSLFDLACQTVAEII 123

Query: 122 AGKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
            G +PE+IR  FNI ND TPEEEA IRR+N W FE
Sbjct: 124 KGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

The following BLAST results are available for this feature:

BLAST of Cla97C05G102870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892847.1	1.3e-71	87.58	SKP1-like protein 14 [Benincasa hispida]	[more]
XP_008446842.1	1.1e-67	83.95	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
TYK09255.1	7.2e-67	83.23	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
KAA0034704.1	7.2e-67	83.23	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_004142439.1	9.4e-67	82.93	SKP1-like protein 14 [Cucumis sativus]	[more]

BLAST of Cla97C05G102870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	5.1e-31	43.35	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.9e-30	45.03	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q39255	3.3e-30	45.06	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9WTX5	4.3e-30	43.56	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3	[more]
Q6PEC4	4.3e-30	43.56	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 S...	[more]

BLAST of Cla97C05G102870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGP6	5.4e-68	83.95	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A5A7SU15	3.5e-67	83.23	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	3.5e-67	83.23	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A0A0KRJ8	4.5e-67	82.93	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A6J1JGP3	2.7e-51	65.58	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1	[more]

BLAST of Cla97C05G102870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	3.6e-32	43.35	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	2.3e-31	45.06	S phase kinase-associated protein 1	[more]
AT1G20140.1	1.5e-30	42.94	SKP1-like 4	[more]
AT2G03170.1	7.5e-30	43.15	SKP1-like 14	[more]
AT3G21850.1	1.7e-29	43.87	SKP1-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 e-value: 4.3E-23 score: 92.7
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..152 e-value: 5.4E-54 score: 184.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 2..67
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 e-value: 5.2E-12 score: 45.7
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..149 e-value: 5.5E-23 score: 80.7
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..152 e-value: 6.9E-51 score: 170.2
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..151
None	No IPR available	PANTHER	PTHR11165:SF110	SCF UBIQUITIN LIGASE, SKP1 COMPONENT	coord: 2..151
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 73..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G102870.1	Cla97C05G102870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity