Cla97C05G090890 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G090890
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Arabinogalactan peptide 22
Location	Cla97Chr05: 8906248 .. 8907051 (-)
RNA-Seq Expression	Cla97C05G090890
Synteny	Cla97C05G090890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGATTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTAGTTTTCTTTTCTTCCTGGTTTTCTCTTTGTTTTGTTTGTTTCTTGAGAAATTTTCTGGGAAAAAGACGGGAAATCCGAGAAAATGGCTTTGAAAATACTCTTCCCTTTAAATTCTAGATTCTAAGAAGCACCAATCAATTCAATTGGGTCTCCTTGAATTGGAAATGGGGTTTGGGGAATTTGGCTCCTTGTTTGAAAAGAAGCAAAATTTACTCCTTTTCTCCCATGCCATTTTTAGACATTTTTCTGTTAGTTTCTTGAGAGGGGACTGACAGGGAATATGAGAATGGCTTTGAAATCAACTCTCATCTTCAAATACAAAGGTGAATCTCCTTAAATTGAAAATGGGTTTCTGGTATTTGAAGAGAAGAGTTGATTTCAAAGGCAAATAGAGTTGTTGGAATTGAATCTCCTTCCTAAATTGGGAAAGTTGACTCCTTGTTTGAATAGAAAACAATATCTACTCTTTTTTCTTCCTCAAGTCAAGAAGAAGAAGCCACCATTTTAGGACATTTTCTTAAAGAAACCTTGCTTAGCTATTAATGGTGTTAAACTCCAAAAATAACATTAATTTGGGATTTCATATGTTGCAGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA

mRNA sequence

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGATTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCCAGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA

Coding sequence (CDS)

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGATTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCCAGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA

Protein sequence

MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Homology

[Close]

BLAST of Cla97C05G090890 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          MAVL+ACFGIYAAVI+AVFYVV+LP  VSAAE SSSPAPAPTSDGTTIDQGIAYVLML+A
Sbjct: 1  MAVLKACFGIYAAVIIAVFYVVTLP--VSAAEFSSSPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 66

[Close]

BLAST of Cla97C05G090890 vs. NCBI nr
Match: TYK03143.1 (arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLL 60
          MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALP--VSSAELSSSPAPAPTSDGTTIDQGIAYVLMLV 60

Query: 61 ALVLTYIIH 69
          ALVLTYIIH
Sbjct: 61 ALVLTYIIH 67

[Close]

BLAST of Cla97C05G090890 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 3.8e-17
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          MAVLRACFGIY AVI+A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLA
Sbjct: 1  MAVLRACFGIY-AVIIAIFYVVMLP--VSRAEHASSPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 69
          L LTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Cla97C05G090890 vs. NCBI nr
Match: XP_008465391.1 (PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLL 60
          MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLAL--SVSSAELSSSPAPAPTSDGTTIDQGIAYVLMLV 60

Query: 61 ALVLTYIIH 69
          ALVLTYIIH
Sbjct: 61 ALVLTYIIH 67

[Close]

BLAST of Cla97C05G090890 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-16
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          MAV RACFGIYA +I A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLA
Sbjct: 1  MAVSRACFGIYAGII-AILFVIILP--VSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 65

[Close]

BLAST of Cla97C05G090890 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-11
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 15 IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          I+AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Cla97C05G090890 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-10
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          M+  R  FG+  + I+++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+A
Sbjct: 1  MSGSRLFFGV--STIVSIIFAILLPMAHA---QSAAPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTY+IH
Sbjct: 61 LVLTYLIH 63

[Close]

BLAST of Cla97C05G090890 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 17 AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 11 ALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Cla97C05G090890 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 12 AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          +  ++A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLL 60
          MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALP--VSSAELSSSPAPAPTSDGTTIDQGIAYVLMLV 60

Query: 61 ALVLTYIIH 69
          ALVLTYIIH
Sbjct: 61 ALVLTYIIH 67

[Close]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          MAVLRACFGIY AVI+A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLA
Sbjct: 1  MAVLRACFGIY-AVIIAIFYVVMLP--VSRAEHASSPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 69
          L LTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL
Match: A0A5A7U3P4 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00750 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-17
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLL 60
          MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLAL--SVSSAELSSSPAPAPTSDGTTIDQGIAYVLMLV 60

Query: 61 ALVLTYIIH 69
          ALVLTYIIH
Sbjct: 61 ALVLTYIIH 67

[Close]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL
Match: A0A1S3CNS5 (arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-17
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLL 60
          MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLAL--SVSSAELSSSPAPAPTSDGTTIDQGIAYVLMLV 60

Query: 61 ALVLTYIIH 69
          ALVLTYIIH
Sbjct: 61 ALVLTYIIH 67

[Close]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          MAV RACFGIYA +I A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLA
Sbjct: 1  MAVSRACFGIYAGII-AILFVIILP--VSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 65

[Close]

BLAST of Cla97C05G090890 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 15 IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          I+AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Cla97C05G090890 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-11
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLA 60
          M+  R  FG+  + I+++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+A
Sbjct: 1  MSGSRLFFGV--STIVSIIFAILLPMAHA---QSAAPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTY+IH
Sbjct: 61 LVLTYLIH 63

[Close]

BLAST of Cla97C05G090890 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-09
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 17 AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 11 ALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Cla97C05G090890 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-09
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 12 AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH 69
          +  ++A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Cla97C05G090890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898060.1	1.4e-19	89.71	arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac...	[more]
TYK03143.1	2.2e-17	85.51	arabinogalactan peptide 22 [Cucumis melo var. makuwa]	[more]
XP_022945187.1	3.8e-17	83.82	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]
XP_008465391.1	1.1e-16	84.06	PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalact...	[more]
XP_022140891.1	9.3e-16	79.41	arabinogalactan peptide 22-like [Momordica charantia]	[more]

BLAST of Cla97C05G090890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	1.1e-11	68.52	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	6.0e-10	57.35	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	4.3e-08	61.54	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.3e-08	54.39	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of Cla97C05G090890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTZ5	1.1e-17	85.51	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1G081	1.8e-17	83.82	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]
A0A5A7U3P4	5.3e-17	84.06	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CNS5	5.3e-17	84.06	arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1	[more]
A0A6J1CHE0	4.5e-16	79.41	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 P...	[more]

BLAST of Cla97C05G090890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	7.8e-13	68.52	arabinogalactan protein 22	[more]
AT5G24105.1	4.3e-11	57.35	arabinogalactan protein 41	[more]
AT2G46330.1	3.1e-09	61.54	arabinogalactan protein 16	[more]
AT3G61640.1	3.1e-09	54.39	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 36..68 e-value: 9.5E-19 score: 67.0
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..68
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G090890.1	Cla97C05G090890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane