Cla97C05G089240 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G089240
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	glucose and ribitol dehydrogenase homolog 1-like
Location	Cla97Chr05: 7460048 .. 7460552 (-)
RNA-Seq Expression	Cla97C05G089240
Synteny	Cla97C05G089240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGGGTCCGGAAGTCCATAGTCTCTGGAAAACTCCCTCTCTCCGCCTCTGTCTCCGAAGACGTACGTGTCCGCCGCAAGCCAATGTAAGGACACGTTAACATTGAACAATCACCCCATTTTTCCACCTATAAAACACCTCTCCATGTATCTCAAAATCAATCATACTCCACTCCTACGATTCTAATTTTACATGCTTTCTAGGTTCTGTTCTTTCTCCATTCGACCTCCTCTTTCTTGTTTGTTGGGTGGGTTTTGCAGTGTTGAGTTTATTAATAATAATAATAATAATACTTCCAGTACGCGTAGTTGGGTGAGAAATATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

mRNA sequence

ATGGGCAGGGTCCGGAAGTCCATAGTCTCTGGAAAACTCCCTCTCTCCGCCTCTGTCTCCGAAGACGTACGTGTCCGCCGCAAGCCAATGTTCTGTTCTTTCTCCATTCGACCTCCTCTTTCTTGTTTGTTGGGTGGGTTTTGCAGTGTTGAGTTTATTAATAATAATAATAATAATACTTCCAGTACGCGTAGTTGGGTGAGAAATATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Coding sequence (CDS)

ATGGGCAGGGTCCGGAAGTCCATAGTCTCTGGAAAACTCCCTCTCTCCGCCTCTGTCTCCGAAGACGTACGTGTCCGCCGCAAGCCAATGTTCTGTTCTTTCTCCATTCGACCTCCTCTTTCTTGTTTGTTGGGTGGGTTTTGCAGTGTTGAGTTTATTAATAATAATAATAATAATACTTCCAGTACGCGTAGTTGGGTGAGAAATATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Protein sequence

MGRVRKSIVSGKLPLSASVSEDVRVRRKPMFCSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSWVRNMASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPFLSLSLLPTSLSLISY

Homology

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_038901233.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 118.6 bits (296), Expect = 3.9e-23
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 31  FCSFSI-RPPLSCLLGGFCSVEFINN-NNNNTSSTRSWVRNMASEAQQFPPQKQQAQPGK 90
           FCS+S+ RPPLS LLGGF S +FI     NN+S  RSWVRNMASE QQFP QKQQAQPGK
Sbjct: 5   FCSYSVNRPPLSSLLGGFWSADFIRRCRINNSSIKRSWVRNMASEGQQFPSQKQQAQPGK 64

Query: 91  QHAMDPTPQFTTSDYKPANKLQ 111
           QHAMDPTP FT+ DYKPANKLQ
Sbjct: 65  QHAMDPTPHFTSPDYKPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_008439102.1 (PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-19
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 31  FCSF-SIRPPL--SCLLGGFCSVEFI-----NNNNNNTSSTRSWVRNMASEA-QQFPPQK 90
           FCS+ +IRP +   CLLGGFC  +F      +N N++  S R WVR+MASE  QQFPPQK
Sbjct: 8   FCSYPNIRPLVIPCCLLGGFCGADFTGCSCRSNTNSSIVSRRCWVRSMASEGQQQFPPQK 67

Query: 91  QQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QQAQPGK+HAMDPTPQFT+ DY PANKLQ
Sbjct: 68  QQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_022985493.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 52/86 (60.47%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 32  CSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSW-------VRNMASEAQQFPPQKQQA 91
           CS+SI    S   GGF S EF      N+   RSW       VRNMASE +QFPPQKQQA
Sbjct: 6   CSYSIGASSSAFFGGFRSPEF-----RNSFIPRSWAIGGVGLVRNMASEGRQFPPQKQQA 65

Query: 92  QPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 66  QPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: KAG6576790.1 (Glucose and ribitol dehydrogenase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-15
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 32  CSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSW-------VRNMASEAQQFPPQKQQA 91
           CS+SI    S   GG  S EF      N+   RSW       VRNMASE +QFPPQKQQA
Sbjct: 6   CSYSIGASSSAFFGGCRSAEF-----RNSFIPRSWDIGGVGLVRNMASEGRQFPPQKQQA 65

Query: 92  QPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 66  QPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_022922637.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-15
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 32  CSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSW-------VRNMASEAQQFPPQKQQA 91
           CS+SI    S   GG  S EF      N+   RSW       VRNMASE +QFPPQKQQA
Sbjct: 6   CSYSIGASSSAFFGGCRSAEF-----RNSFIPRSWAIGGVGLVRNMASEGRQFPPQKQQA 65

Query: 92  QPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 66  QPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. ExPASy Swiss-Prot
Match: Q5KTS5 (Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 76  QFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QFPPQKQ++QPGK+H MDP+PQ  +  YKPANKLQ
Sbjct: 6   QFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQ 40

[Close]

BLAST of Cla97C05G089240 vs. ExPASy Swiss-Prot
Match: Q9MA93 (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-07
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 74  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 110
           A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2   ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240 vs. ExPASy Swiss-Prot
Match: Q75KH3 (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 9.0e-07
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 74  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           +QQFPPQ Q+ QPGK+HAMDP P+     YKPANKL+
Sbjct: 3   SQQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLK 39

[Close]

BLAST of Cla97C05G089240 vs. ExPASy Swiss-Prot
Match: Q9FZ42 (NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ChlADR1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 70  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 1   MASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 36

[Close]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL
Match: A0A1S3AYK5 (glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103483994 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 31  FCSF-SIRPPL--SCLLGGFCSVEFI-----NNNNNNTSSTRSWVRNMASEA-QQFPPQK 90
           FCS+ +IRP +   CLLGGFC  +F      +N N++  S R WVR+MASE  QQFPPQK
Sbjct: 8   FCSYPNIRPLVIPCCLLGGFCGADFTGCSCRSNTNSSIVSRRCWVRSMASEGQQQFPPQK 67

Query: 91  QQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QQAQPGK+HAMDPTPQFT+ DY PANKLQ
Sbjct: 68  QQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL
Match: A0A6J1JDR9 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483486 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 52/86 (60.47%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 32  CSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSW-------VRNMASEAQQFPPQKQQA 91
           CS+SI    S   GGF S EF      N+   RSW       VRNMASE +QFPPQKQQA
Sbjct: 6   CSYSIGASSSAFFGGFRSPEF-----RNSFIPRSWAIGGVGLVRNMASEGRQFPPQKQQA 65

Query: 92  QPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 66  QPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL
Match: A0A6J1E3V2 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430586 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 32  CSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSW-------VRNMASEAQQFPPQKQQA 91
           CS+SI    S   GG  S EF      N+   RSW       VRNMASE +QFPPQKQQA
Sbjct: 6   CSYSIGASSSAFFGGCRSAEF-----RNSFIPRSWAIGGVGLVRNMASEGRQFPPQKQQA 65

Query: 92  QPGKQHAMDPTPQFTTSDYKPANKLQ 111
           QPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 66  QPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL
Match: A0A6J1CI89 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011421 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 31  FCSFSIRPPLSCLLGGFCSVEFINNNNNNTSSTRSWVRNMASEAQQFPPQKQQAQPGKQH 90
           FCS+S R P   L+G F       +       +   VRNMASE + FPPQKQQAQPGK+H
Sbjct: 5   FCSYSTRSPSYSLVGVFRQ----RSTKIPVRLSVFLVRNMASERKNFPPQKQQAQPGKEH 64

Query: 91  AMDPTPQFTTSDYKPANKLQ 111
            MDPTPQFT+ DYKPANKLQ
Sbjct: 65  VMDPTPQFTSPDYKPANKLQ 80

[Close]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL
Match: A0A2H5P9V5 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 63  TRSWVRNMASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPF 114
           TR  +RNMAS  QQFPPQKQ+AQPGK+H M+PTPQFT+ DYKP+NKL+  F
Sbjct: 45  TRVIMRNMASGNQQFPPQKQEAQPGKEHVMEPTPQFTSHDYKPSNKLRVRF 95

[Close]

BLAST of Cla97C05G089240 vs. TAIR 10
Match: AT3G05260.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 74  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 110
           A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2   ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240 vs. TAIR 10
Match: AT1G54870.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 62  STRSWVRNMASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 111
           S R  +R MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 40  SPRVCLRAMASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 83

The following BLAST results are available for this feature:

BLAST of Cla97C05G089240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901233.1	3.9e-23	75.61	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Benincasa hispida]	[more]
XP_008439102.1	9.9e-19	64.04	PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis melo]	[more]
XP_022985493.1	7.8e-16	60.47	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima]	[more]
KAG6576790.1	3.9e-15	59.30	Glucose and ribitol dehydrogenase, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022922637.1	3.9e-15	59.30	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Cla97C05G089240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5KTS5	1.4e-07	71.43	Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1	[more]
Q9MA93	5.3e-07	66.67	Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q75KH3	9.0e-07	64.86	Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9FZ42	1.1e-04	58.54	NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cla97C05G089240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYK5	4.8e-19	64.04	glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JDR9	3.8e-16	60.47	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A6J1E3V2	1.9e-15	59.30	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A6J1CI89	1.5e-12	57.50	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Momordica charantia ...	[more]
A0A2H5P9V5	1.4e-10	70.59	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1	[more]

BLAST of Cla97C05G089240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05260.1	3.8e-08	66.67	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G54870.1	1.2e-06	55.10	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089240.2	Cla97C05G089240.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity