Cla97C05G084570 (gene) Watermelon (97103) v2.5

Overview
NameCla97C05G084570
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr05: 3528843 .. 3529070 (+)
RNA-Seq ExpressionCla97C05G084570
SyntenyCla97C05G084570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGAGGAAGAGAAGAGGAGGTGGGTGTGATGATGATGGGACCCAGATGTCTGGTAGTGCGGCTACCAGTGATAGCAGTTACCCACCATGGTTCTCCATTGTTGTCGACAAGAATTTCCCTTTTGAGCTGAATCTCAACACGATTCATGTCTCCTTCACGGATCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTGTCTGCTCTCTGTAGTCTGTAG

mRNA sequence

ATGAGTGTGAGGAAGAGAAGAGGAGGTGGGTGTGATGATGATGGGACCCAGATGTCTGGTAGTGCGGCTACCAGTGATAGCAGTTACCCACCATGGTTCTCCATTGTTGTCGACAAGAATTTCCCTTTTGAGCTGAATCTCAACACGATTCATGTCTCCTTCACGGATCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTGTCTGCTCTCTGTAGTCTGTAG

Coding sequence (CDS)

ATGAGTGTGAGGAAGAGAAGAGGAGGTGGGTGTGATGATGATGGGACCCAGATGTCTGGTAGTGCGGCTACCAGTGATAGCAGTTACCCACCATGGTTCTCCATTGTTGTCGACAAGAATTTCCCTTTTGAGCTGAATCTCAACACGATTCATGTCTCCTTCACGGATCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTGTCTGCTCTCTGTAGTCTGTAG

Protein sequence

MSVRKRRGGGCDDDGTQMSGSAATSDSSYPPWFSIVVDKNFPFELNLNTIHVSFTDLSLSFSFSFSFSLSALCSL
Homology
BLAST of Cla97C05G084570 vs. NCBI nr
Match: KGN56807.1 (hypothetical protein Csa_011656 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.9e-18
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 12 DDDGTQMSGSAATSDSSYPPWFSIVVDKNFPFELNLNTIHVSFTDLSLSFSFSFSFSLSA 71
          ++D  +MSGSAATSDSSYPPWFSIVVDKN PFELNLNTIHVSFTDLSL  S SFSFSLS 
Sbjct: 17 EEDEEEMSGSAATSDSSYPPWFSIVVDKNLPFELNLNTIHVSFTDLSL--SLSFSFSLSP 76

Query: 72 LCSL 76
          LCSL
Sbjct: 77 LCSL 78

BLAST of Cla97C05G084570 vs. ExPASy TrEMBL
Match: A0A0A0L856 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134560 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 12 DDDGTQMSGSAATSDSSYPPWFSIVVDKNFPFELNLNTIHVSFTDLSLSFSFSFSFSLSA 71
          ++D  +MSGSAATSDSSYPPWFSIVVDKN PFELNLNTIHVSFTDLSL  S SFSFSLS 
Sbjct: 17 EEDEEEMSGSAATSDSSYPPWFSIVVDKNLPFELNLNTIHVSFTDLSL--SLSFSFSLSP 76

Query: 72 LCSL 76
          LCSL
Sbjct: 77 LCSL 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56807.14.9e-1884.38hypothetical protein Csa_011656 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8562.4e-1884.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G084570.1Cla97C05G084570.1mRNA