Cla97C05G084170 (gene) Watermelon (97103) v2.5

Overview
NameCla97C05G084170
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr05: 3185297 .. 3186062 (-)
RNA-Seq ExpressionCla97C05G084170
SyntenyCla97C05G084170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGGTAAAAACGATTGACATAAAACCCTTTTACTTCAATTTCTTTCGCTTTCTTCTATGCAATTCGATTTCATTTCATTTCATTTTTGAATCCGCCTCTCTCTTTGACAAAAACCCCTCCAAAATCCCCTTCAATTGCTCTTTTTCTCTCAAATTATCTCTTCTTTTAGATCTCGTTGTTCTCCCTTGTTCCTCTTTTTGATACAAACATTATTTGTTGGGTTTTGCCCTTTGCTTGGATGGTGGGGTTTTCCTGCTTTTTTCTTGTATTCTTTTCTTGATTCCTTTACATATTTTTATCCATTTCTTTACAGATTCTACTGCTCTTGATTATATTTCTTTAATTTATAATTCCTGCTTCACGCACCCACATGCATGTTTTTGGGTTTGTCTGATCTGGATTGGATCACAAGGATCTTATGTTCTTTTTCTACTTGCAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

mRNA sequence

ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

Coding sequence (CDS)

ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

Protein sequence

MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREERKREWGLGSFPAILVSRAGHGRSKQEKEKVSFLELKDIPIGPLEKPFFFV
Homology
[Close]
BLAST of Cla97C05G084170 vs. NCBI nr
Match: KGN56758.1 (hypothetical protein Csa_009575 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-25
Identity = 65/84 (77.38%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1  MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREER 60
          MGKRGRKRKWKCKFLLFWLTWRLSI D LSSSDFVLP  VFFLSNKLP+ +ER  ERE  
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEERGIERE-- 60

Query: 61 KREWGLGSFPAILVSRAGHGRSKQ 85
           R WGLGSFPAILVSR      KQ
Sbjct: 61 -RGWGLGSFPAILVSRERVSWKKQ 81

[Close]
BLAST of Cla97C05G084170 vs. NCBI nr
Match: KAG7028774.1 (hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 13  KFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREERKREWGLGSFPAI 72
           + LL WLTWRLSI+D+LSSSDF+L S +F         +   RER    +  GLGSF   
Sbjct: 11  ELLLLWLTWRLSIMDNLSSSDFLLDSSLFLSDKGFQFAEIILRER----KRVGLGSFSPN 70

Query: 73  LVSRAGHGRSKQEKEKVSFLELKDIPIGPLE 104
           L    GHGRSKQE+EKV +LELKDI IGPLE
Sbjct: 71  LGLYWGHGRSKQEEEKVRYLELKDILIGPLE 97

[Close]
BLAST of Cla97C05G084170 vs. NCBI nr
Match: KAG7018847.1 (hypothetical protein SDJN02_20720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 0 

Query: 1   MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREER 60
           MGK GR+              R + L H+++  F   S  F L   L   +E+ER   ER
Sbjct: 1   MGKGGRRGS------------RSASLAHMATFHFG-QSVFFRLRFTLRCCREKERRERER 60

Query: 61  KREWGLGSFPAILVSRAGHGRSKQ-EKEKVSFLELKDIPIGPLEKPFFFV 110
           +R WG G F   L    GHGRS Q E+EKV FLELKDI  GP +KPFFFV
Sbjct: 61  ERGWGFGPFSCNLGLSRGHGRSTQEEEEKVRFLELKDIATGPFDKPFFFV 97

[Close]
BLAST of Cla97C05G084170 vs. ExPASy TrEMBL
Match: A0A0A0L4R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 65/84 (77.38%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1  MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREER 60
          MGKRGRKRKWKCKFLLFWLTWRLSI D LSSSDFVLP  VFFLSNKLP+ +ER  ERE  
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEERGIERE-- 60

Query: 61 KREWGLGSFPAILVSRAGHGRSKQ 85
           R WGLGSFPAILVSR      KQ
Sbjct: 61 -RGWGLGSFPAILVSRERVSWKKQ 81

The following BLAST results are available for this feature:
BLAST of Cla97C05G084170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56758.14.6e-2577.38hypothetical protein Csa_009575 [Cucumis sativus][more]
KAG7028774.11.6e-1456.04hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7018847.17.1e-1044.55hypothetical protein SDJN02_20720, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C05G084170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C05G084170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4R32.2e-2577.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1[more]
BLAST of Cla97C05G084170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G084170.1Cla97C05G084170.1mRNA