Cla97C05G083600 (gene) Watermelon (97103) v2.5

Overview
NameCla97C05G083600
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr05: 2748123 .. 2750207 (-)
RNA-Seq ExpressionCla97C05G083600
SyntenyCla97C05G083600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGAATTCTTGTGACAGTGATGGAAGGATATCTAGTGGTCCATTTTCTTCAAAATTCCCAAAATCTTTTTCAAAGTTGAGATGTAGCATTCAGAATGCCAGTTTAGCCAATCAAGGTATGACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGCTTCAAAGCAAAATCTGAATAGGTCAACATTTTCATTCTCCAAACATGAAGATGATGGGAAACTCTGCTATTTGTCAAAGAGGTCTGCACCTAACTTGAAGCCATTTTTCTTGCTAATTGTAGTTGAAATGGTTTAATCAAGAGCAAACCCATATGATAAAGCATCAACCTCAACCTCAGAAATGGAGGTTGAGATTAGGCAGTATAGTTTGCCAGTATTTCTAATTCTTCTTTACTTTATTAATTTGTGCACTTCTTCCCCCTTATTTTATAGATATGGTCCTTGAACTTTGTCTGATTTTAGATTGTTTTTTTTTATTGTCAGTATCTGACATCAGTACTTTTGTTGAGACAAGTTTTGATTTAAAAGCTCAAAACTTCACATGGAAGAATAGTATAAGAGAAAATTTGAAATTTAAATATTGAAATTCAAGTTTAAGAATACTTTCCCCTTACATTATGCAAAGTGAATTGGGTAGCCCTACATAGATTCTGACTACTCTGCATAAGGCAACAAAGTGAAAGAGCATAATAGACAGTAGAAAAGTGCTAATCATTGAGACAATTCTTAGGCTTCAAAAGCACACCGCCTTGAGTTTAAAACTTTTAGAAATTCAATAGTTCAGACAATTCTGATCAGTTACCCTCAGCAAAATCCCAAAAAGAAAGAAAAAAAAAACTCTTTAATAAAGCTTTGACAGAATATGATGCATGAGTAACATCTCTGAAGAGGCTTGTAAATTGTAAAATGTACATTCAAATTAAGTCCATCTAGTTTGCTAATCTGGTATGAATCTGGGTTTCTTCTTTGATTTCACCAATATATTACAGAAGTAAGAGTGAAAACTTTTCAAATTTTGTACAGTTTGTAAATCTACTTTCAACTGGGAATGATGCAACTCTTTCCTTTCCCATAGTTTGTAAAACCCAGTTTCCCAGTTGAAATAGATCTATTCATTCTCAAGTTGGAAACCCCTGTTTTGTGATTGGAATTGGAATGCTCTTGAACAAATACTTTTGAAGATCCAATCCCCATTTGCTGTAACTCATTTTCCTCTAACTCTTCCTCACTATCTTGACTGACTCTCAATATATCAGCAACAGAAACCTGCCCTTGCCATGATAAAGAATTCAAGGAAACTGACCTTCTAAATGGCTGAACGACACCATCCACAACATCATATTCCTGTCTAACTTGATTCAGTCTGTCTCTTGCCTCTGAATTTTGACTATCTGATGCAAAACCTTGCCTTTGATTCTTGTAAGCATCATCATTTTCAAGCCTAGAATCAGCAGTCTCTTGCCTCACTTCAGTTAAATCCTGCATATCTTGAACCACTACGACAACTACTGTGTCATTGGTTCTGTGTTGATGCTGATACTGAAAAGCAGATGAAACTAAATGTTGTGTTGTTTGAATTTCTTGAGTTGGGGGTGGGAAAAGATTTGTTGGTGAAATGTTGGAGCGGCAAAGAGGGCAAGTTGAGTGAGATTTAAGCCATGTGTCAATGCAAGGAAGATGAAAGGCATGGCTACACTTTGGGAGCAGTCTTAAGCTCTCATTTTCTTGAAACTCACTCAGGCAAACTGAGCAATCAGTGCCTTCAACTAACCCATCTCCTCTTTTGTATTTGCAGACTGTGATGGACTTGATTAGAGCCTCATCCAAGCCTGGAGGAGGAGGAGGAGCTTGGAGCTGGTTTTCATGGTGGATTTGGGAAAGATTTTCTTCATCCTCCATTTCCATAGCGGCGTTGGAGGTGGAACCTCTGTTCCTGCAATACTTGGAGATGATGGTGTAGTAACTTACCAAAATGAAAGCGCTAGCCAAGATACCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGCCAGAATCTCCATTGCTGCCATAGCCAAAAGGTGGAGGCGGTGGAAAAATGAT

mRNA sequence

ATGGACCAGAATTCTTGTGACAGTGATGGAAGGATATCTAGTGGTCCATTTTCTTCAAAATTCCCAAAATCTTTTTCAAAGTTGAGATGTAGCATTCAGAATGCCAGTTTAGCCAATCAAGTATCTGACATCAGTACTTTTGTTGAGACAAGTTTTGATTTAAAAGCTCAAAACTTCACATGGAAGAATACCTGGAGGAGGAGGAGGAGCTTGGAGCTGGTTTTCATGGTGGATTTGGGAAAGATTTTCTTCATCCTCCATTTCCATAGCGGCGTTGGAGGTGGAACCTCTGTTCCTGCAATACTTGGAGATGATGGTGTAGTAACTTACCAAAATGAAAGCGCTAGCCAAGATACCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGCCAGAATCTCCATTGCTGCCATAGCCAAAAGGTGGAGGCGGTGGAAAAATGAT

Coding sequence (CDS)

ATGGACCAGAATTCTTGTGACAGTGATGGAAGGATATCTAGTGGTCCATTTTCTTCAAAATTCCCAAAATCTTTTTCAAAGTTGAGATGTAGCATTCAGAATGCCAGTTTAGCCAATCAAGTATCTGACATCAGTACTTTTGTTGAGACAAGTTTTGATTTAAAAGCTCAAAACTTCACATGGAAGAATACCTGGAGGAGGAGGAGGAGCTTGGAGCTGGTTTTCATGGTGGATTTGGGAAAGATTTTCTTCATCCTCCATTTCCATAGCGGCGTTGGAGGTGGAACCTCTGTTCCTGCAATACTTGGAGATGATGGTGTAGTAACTTACCAAAATGAAAGCGCTAGCCAAGATACCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGCCAGAATCTCCATTGCTGCCATAGCCAAAAGGTGGAGGCGGTGGAAAAATGAT

Protein sequence

MDQNSCDSDGRISSGPFSSKFPKSFSKLRCSIQNASLANQVSDISTFVETSFDLKAQNFTWKNTWRRRRSLELVFMVDLGKIFFILHFHSGVGGGTSVPAILGDDGVVTYQNESASQDTNDGDDERREISARISIAAIAKRWRRWKND
Homology
[Close]
BLAST of Cla97C05G083600 vs. NCBI nr
Match: KAG7018889.1 (hypothetical protein SDJN02_20762, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-44
Identity = 99/148 (66.89%), Postives = 112/148 (75.68%), Query Frame = 0 

Query: 1   MDQNSCDSDGRISSGPFSSKFPKSFSKLRCSIQNASLANQVSDISTFVETSFDLKAQNFT 60
           MDQNS +SDGRISSGPFS+KFPKSFSKLR S QN+++ANQ            D    + +
Sbjct: 28  MDQNSGESDGRISSGPFSAKFPKSFSKLRSSFQNSNIANQ------------DCDGLDES 87

Query: 61  WKNTWRRRRSLELVFMVDLGKIFFILHFHSGVGGGTSVPAILGDDGVVTYQNESASQDTN 120
                RRRRSL+LVFM DLGKIFFI+HFH  VGG +SVPAI GDDGVV Y NE ASQD+N
Sbjct: 88  MIQACRRRRSLQLVFMADLGKIFFIIHFHDSVGGSSSVPAIFGDDGVVAYHNEGASQDSN 147

Query: 121 DGDDERREISARISIAAIAKRWRRWKND 149
           DGDDERREIS  I+IAAIAKRWR WK+D
Sbjct: 148 DGDDERREISGGIAIAAIAKRWRWWKDD 163

[Close]
BLAST of Cla97C05G083600 vs. NCBI nr
Match: KAG7028734.1 (hypothetical protein SDJN02_09915, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 8.5e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 3  QNSCDSDGRISSGPFSSKFPKSFSKLRCSIQNASLANQ 41
          QNS D+DGRI SGPFS+KFP+SFSKLRC  Q+ASLANQ
Sbjct: 41 QNSGDNDGRIPSGPFSAKFPQSFSKLRCIFQHASLANQ 78

The following BLAST results are available for this feature:
BLAST of Cla97C05G083600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018889.16.0e-4466.89hypothetical protein SDJN02_20762, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7028734.18.5e-0678.95hypothetical protein SDJN02_09915, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C05G083600 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C05G083600 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C05G083600 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G083600.1Cla97C05G083600.1mRNA