Cla97C04G079470 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G079470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RRM domain-containing protein
Location	Cla97Chr04: 26663539 .. 26667187 (-)
RNA-Seq Expression	Cla97C04G079470
Synteny	Cla97C04G079470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTAATTCTAATGTGATACGGGGTCGTTTTAGAGGTATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCCCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTCTTCTCTGTGAGGAAGACTCGCTCAATTTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTACTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGTTGATTTTCTTTCTCCCAATTGTTTATTTAGGCGTAGTTTTGCTAGAGACAATTTGGATTTATTGAATGATTTCAACTTCACGCCTGCAGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTCGTAGAAGGTCGTCGATTAGTACTCTTGTGTATTCTGAATGTTCCATTTTGTCTCTATAGTTGATATCCGGCGCTAACTGTTATCAATTGTTATGAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGGTAATTTAAATGCACAATGGATACTCTGTCTAATTTCTTCCAAATGAGTGTAGTTTTCATAATGCATATTGTTTTCTTCTGTGTTGCATTTATTATCTATTATCCTCTTAATCGCCAAAATTCGACTTAAAATGCTCTTTTCTTATCCACTGTAGTTTGCAGTGCATATGACTCGCTGTCTAGAAGTATATCTCATCTAGTCATCATCTCTAGCCGAAGACGGTAGATGCATCCATAAGAACTGTAAATAACTATAATCTAGAAATTGCGAAGTTTGATTCCATTACCTGCCATCTTGAGCAAGCCTTTCAGTATCTATGAAATAAAATCATAGAAATTAAAACCCTCCAGTTTAGGCATTTCACAAAGCAGCAAGAAACCTTGAAATTCTCTATAAATTTAGATAGAAAATTGATATCTAGGTAGGAGAAGTTGGATGTAATAGTTTTAAGGTAACATTAAGAGGATATAAGGTAGCGTTCATCCAGTTATTCTTAATCTTGCTCCTTTCCCAGCTGTGGAAAATTATAACCGTTATACCTTCAAACGAAAAAAATGAACTGCTTCAGTGGATAGTTAATAGTTGAATGCTGATCTAATCATTTGTTATTACAACTTTGTTTTATGACATCGAACGTGTATATATCAGCAGGTAGATTACTTGTCATCGTTAGATTAACACTGTTAGGAGGAAAAGAGCCAATTAATTAAACCTGCCCTAGCCATCGACTTTCTGTTTTCCTACATTCAAAACCTTGGATGGAACTCACTAGACATTTGTACATGATCTTATAATATTGAAGAGGCATTGTCTCTTCCCCTGTCTCCTCAGCCAAGTGAAACTTACCAGCAGGCAGTAACTAATTCACTCCCTATTTCTCTCCTCCTCAAAGCTTTCCTATTTATAATCACTTACCTAAGAAACTAACTAGTTCCCATTCATTAAATATAAAGCAACAATAACTAATATAGAAGATTCTTGAAGTATCTGCAAAATGACATAAAAGTGTAAGCAAGCTTTTTCTAGAATTATGTCGAAATATGGAAATTATAAATAAATACCACAAAAGTAAGGATCTAAAATTGTCCTGGATTTTCTTTAGGTTTAAGAAATTCTTGAATTCCTTTAAATAAGAATGAACCAAGAAATAACTAAAATATTTAGGCTCCAAGGATCTCATGTCTATAAATAAGAGGTGTGGCACCATAGGTAAGCCAAAAAAAGTAGGAGAGTTAGAGAGAAACTTAGAATGAAAAGTGAGTGAATGTGCCTTGAAAAAGTGAAAAAGTATTCTTTGGAAAGTATCAATCTTTGTACATTCTCAATAAAAGATTCTTTCTTTCAAGAGATTATCTCTCTTCCTTTTGGGCCAATTTCTTCCCTAGTTTCAACTAACTTTGGCTAAGGGCAAAAGTGTTTAAAACGAAAGCACGGGTTTTTTTTTTTTTAAATCTTCAAAAAGATTTTTATTATTTAACTAAATACTACGAGAATTTTTAAAAATACTTTTAAGTAATTTTTCACCCTTCTAAAAGTGAGTCCAACTCACTACCACTGATGGTCATTCTCGTCTTTGTCCTTGAGCTTGATATTATAAATAAACCATGTGGGAGGCTTATGAGGCCTATAAAACACTGCTTAAACCAAAATATCAAATGTTTCTTGATTTTTCGGCATGTCCTACATAATTAATTGCAATAAAATTCAGCATAATTTAATATGGACTTGGAAGAGAAATGATTAGAGACATATCATGGTTAGACCCTAATTGCTGGCTTGACTTGTCATAAAACGATAACTGTTTAATGAACTTGTTATATGAAAGGATTTATTTTTAATTAAACTCAGACAACACTAGATTCAATAAATTCACGTTTTTAGCGAAAATATTTCCGAGTTCCAATAACTGGCCAAATTGCTGTTAAGTATGTGGCACTTTTTGGCCTCGAGGCTTCCTCCAATTTGTAGTGACAACTATTTTTGTCGAAGTTAACAGTCAGAGAACTTATTCCCTGGTTTATTTGATGGATATACCCTCCCCACCTCTCCCCATTGGGAAGCATGAATTGATATGATATTCTCTTCTAGGGTTCCATGGATAAAATTCCGATGCCACCTCAAGGAAAAAAAAGGCTACTTTTGAAATCAAGGTCATAGCTGGGAGGGTCTGATCTATGCTAACTGATTATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAATAATTTTATTATCTGTATATACACACATACATATATATTTTTAATAAAATAAAAAAAGAATCTTTGATGATCTTGTTGTCTTAAATTTATTGGTGCATGGTATTTTCAATCATAGTAGCACCCATCATGGGCTAATAGGGGAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAATTGCTAGTACATGGGGAGTCATTGTTTCCCTCAAAATTCAGATTCATTTTTAAAAGAGCCGTAACTTATTTTAGGAATATCAATAATATGCAAATCAATGGGCTCTCTGGTTGTTATTGGTATGAGAAAGCTTGATCTTGATTGTATGATTATGATATAGTCAAAGTGTATTTCAGGAGCAGCGTTTTCTGTTGAAATTAAATGATATTATTATCGGGGATTGGTGAAGTTGATCACCTAACCAAATCTGAACTTCTGAGACATGGGCTATGGTCAAAGATCGCAGGTTGAAACAAGAATATGAATGCTTAATCAAGGATTCCTATTATAATCACAGGCACCTACCAAGTTTTTACTTTTAATTAGACTAATAAGTCAGTTTTTGTACTTGATTGTTCA

mRNA sequence

TAGTAATTCTAATGTGATACGGGGTCGTTTTAGAGGTATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCCCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTCTTCTCTGTGAGGAAGACTCGCTCAATTTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTACTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTCGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAATTGCTAGTACATGGGGAGTCATTGTTTCCCTCAAAATTCAGATTCATTTTTAAAAGAGCCGTAACTTATTTTAGGAATATCAATAATATGCAAATCAATGGGCTCTCTGGTTGTTATTGGTATGAGAAAGCTTGATCTTGATTGTATGATTATGATATAGTCAAAGTGTATTTCAGGAGCAGCGTTTTCTGTTGAAATTAAATGATATTATTATCGGGGATTGGTGAAGTTGATCACCTAACCAAATCTGAACTTCTGAGACATGGGCTATGGTCAAAGATCGCAGGTTGAAACAAGAATATGAATGCTTAATCAAGGATTCCTATTATAATCACAGGCACCTACCAAGTTTTTACTTTTAATTAGACTAATAAGTCAGTTTTTGTACTTGATTGTTCA

Coding sequence (CDS)

ATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCCCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTCTTCTCTGTGAGGAAGACTCGCTCAATTTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTACTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTCGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MDSEKWGTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS

Homology

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BLAST of Cla97C04G079470 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 318.2 bits (814), Expect = 5.5e-83
Identity = 168/205 (81.95%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFPITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TP  FFSV+KTRSISDSPLFSV C S+SP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFL 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHGKFL
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFL 181

Query: 187 DGRVIFVEVAKSRSELRQGLKENSS 212
           DGRVIFVEVAKS+ ELRQGLKENSS
Sbjct: 182 DGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Cla97C04G079470 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.8 bits (813), Expect = 7.2e-83
Identity = 168/205 (81.95%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFPITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TPL FFSV+KTRSISDSPL SV C S+SP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFL 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHGKFL
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFL 181

Query: 187 DGRVIFVEVAKSRSELRQGLKENSS 212
           DGRVIFVEVAKS+ ELRQGLKENSS
Sbjct: 182 DGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Cla97C04G079470 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-81
Identity = 161/178 (90.45%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQLAYSSTPL FFSVRKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 94  ISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           ISDSPLFS+AC S+SP PSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           DKVANRPRGFAFLRYATEEES+KAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of Cla97C04G079470 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 153/178 (85.96%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC S+S  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           D+VANRPRGFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVE+AK RSELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Cla97C04G079470 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 2.1e-74
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P FQ QTTHH +I STET MRI+SIQS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSTSP--PPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 153
           ISDS LFSVAC S+SP    SPRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 154 VMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           VMD++ANRPRGFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVEVAKSRSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 87  SVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 146
           S R+ R I    + S     +S  P      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 147 VEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSEL 203
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 108 SPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLR 167
           S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 168 YATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENS 211
           YAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-18
Identity = 43/84 (51.19%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 121 RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEG 180
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 181 MHGKFLDGRVIFVEVAKSRSELRQ 205
           M+G+ ++G +I V+VAK RS  RQ
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 41/83 (49.40%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 121 RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEG 180
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 181 MHGKFLDGRVIFVEVAKSRSELR 204
           M+G+ ++G +I V+VAK+RS  R
Sbjct: 360 MNGQIINGWMIVVDVAKTRSRDR 382

[Close]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 105 NSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 164
           +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+A
Sbjct: 273 DSESPP------VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 332

Query: 165 FLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSR 200
           FL Y TEE +  A++ M+GK ++G +I V+VAK++
Sbjct: 333 FLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 168/205 (81.95%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFPITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TP  FFSV+KTRSISDSPLFSV C S+SP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFL 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHGKFL
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFL 181

Query: 187 DGRVIFVEVAKSRSELRQGLKENSS 212
           DGRVIFVEVAKS+ ELRQGLKENSS
Sbjct: 182 DGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 153/178 (85.96%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC S+S  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           D+VANRPRGFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVE+AK RSELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P FQ QTTHH +I STET MRI+SIQS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSTSP--PPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 153
           ISDS LFSVAC S+SP    SPRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 154 VMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           VMD++ANRPRGFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVEVAKSRSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.6e-73
Identity = 151/178 (84.83%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F  +A P P FQ Q+T + NIRST T MRIQSIQS+LAYS+TPL FFSV+KTRS
Sbjct: 1   MTAGLLF--SAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 60

Query: 94  ISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           ISDSPLFSV C S+SP PSPRRY+PSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           DKVANRPRGFAFLRYATEEES+KAIEGMHGKFLDGRVIFVEVAKS+ ELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.1e-63
Identity = 130/153 (84.97%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 34  MTAGLPFPITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P FQ QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC S+S  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKFL 187
           D+VANRPRGFAFLRYA+EEES+KAIEGMHGK L
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of Cla97C04G079470 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.6e-34
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 87  SVRKTRSISDSPLFSVACNSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 146
           S R+ R I    + S     +S  P      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 147 VEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSEL 203
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Cla97C04G079470 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-21
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 108 SPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLR 167
           S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 168 YATEEESRKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENS 211
           YAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Cla97C04G079470 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 119 STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAI 178
           S +L+VS LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + +E+++RKA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 179 EGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 212
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of Cla97C04G079470 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-18
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 105 NSTSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 164
           +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+A
Sbjct: 273 DSESPP------VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 332

Query: 165 FLRYATEEESRKAIEGMHGKFLDGRVIFVEVAKSR 200
           FL Y TEE +  A++ M+GK ++G +I V+VAK++
Sbjct: 333 FLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Cla97C04G079470 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 119 STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAI 178
           S RL+VSGLS  TT E L++AF SFGQLV+  ++ D+ + R +GF F+ YAT E++ KA 
Sbjct: 33  SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92

Query: 179 EGMHGKFLDGRVIFVEVAKSRSELR 204
             M+ KFLDG VIFV+ A+ R   R
Sbjct: 93  AEMNAKFLDGWVIFVDPARPREPRR 117

The following BLAST results are available for this feature:

BLAST of Cla97C04G079470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949592.1	5.5e-83	81.95	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
KAG6607420.1	7.2e-83	81.95	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]
XP_038895072.1	1.4e-81	90.45	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_008439477.1	2.9e-76	85.96	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_011649648.1	2.1e-74	84.44	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]

BLAST of Cla97C04G079470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	1.2e-32	60.34	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.2e-19	48.54	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	1.7e-18	51.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
C0HFE5	1.1e-17	49.40	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q8L440	1.9e-17	45.26	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Cla97C04G079470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCJ4	2.7e-83	81.95	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A1S3AYF6	1.4e-76	85.96	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	1.0e-74	84.44	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A6J1KDG6	5.6e-73	84.83	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A5A7SXY0	3.1e-63	84.97	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of Cla97C04G079470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	8.6e-34	60.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	8.3e-21	48.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	4.1e-20	46.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.3e-18	45.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	2.5e-17	51.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 1.8E-25 score: 100.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..191 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..198 score: 19.535994
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 121..194 e-value: 0.0017 score: 27.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 88..207 e-value: 2.2E-29 score: 104.4
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 42..209
None	No IPR available	PANTHER	PTHR48029:SF4	ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 42..209
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 107..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G079470.2	Cla97C04G079470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding