Cla97C04G078660 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G078660
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Glycine-rich RNA-binding protein 3
Location	Cla97Chr04: 26122033 .. 26123980 (+)
RNA-Seq Expression	Cla97C04G078660
Synteny	Cla97C04G078660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCAACCAAAAAAGTTACAGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGGTATTCATTCTCCTATTTATAATCCAACGGTGTACGTACAAGCTTTAGTGTCTACTTATATCGCTCTTTCAAATCGGCTATCACAAAACCCTGCTCGAATTGAAGGCTTAGGGTTTAAGCTTGGCCGTGAAAGAAAGGAAGAAGAGAACGAACAAAGGTTCTATTTTCATTTCCGATTCATTTTTCCTTTCCTTTCCTTATTTTGTAATGATGCTAATCTTAATTCTTATGTTTCTGTATCTCTTTATTCTTCGTTGTGGATTTTGATTGCTTGTGTTTGTGTTTAGATCTTTTGTTTTTCTGTAGAGATATTTTATTTGTCCATTTGAAGAAATACAAAGATTATTCTGGAAGATTATTCTTCCTGACTGAACTTAGATACGTTCTGATTTGAAGTTTTTTTTTCATTCTTCTTTTGTGTTTGCGTTCTTTTTTCGATTTTGAAAGTCAAGATTTCCACGATAACGTTCTGGGTATATATGCTCTGCTTAAAAATGATTCTGATCGTTATTGAGTGCTCTTCTGCTACGGTTAGGACGGTTTGATCTGATGCCTCTATAGAACATCTATTCAAAGCGTGCATGAGAACATGATTAGTTTGATGTGGTAAAGATTGGCTATAATGGGTTTAATTTTAAGCTTTTTCACTTTTGAGATCACTTTGATCGCATGTTTCCACAATTTTTCTTTGTTTATCGTTTATTATGGATTATACAGTAGTACCTAAAACTTTCTTTTTTATTATGAAGTTGATGTACATTGTCGTTCAAAATATTTGCAGGTACGGTGTTATCTTGCACAACTACTTTTGTTCCCCATGGGGTTTAATTTCTTTTTTTGGGTAATTCTTTCAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGTTAGCTGGAATTCCAGTCCAGTTCTGTTCTTTCTTACACCTTGGTGATCCTTTAGAACTTTCCCTGAGATCAAGTTGCTTTGTACTGCAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGGTGTGCAGGCAACTTATCTAACTGAACATTATTGAGTGGGAAAGCTAAAATTTTTGTTCTAGTGTACATACCACTGTTGTTCATCCGTTTTGGAAAATTTGATTAAACATTTAAAATTTCTGTAAGAACAGTATTCGTGGGGGCACTTTCACTGCCAATGAAGAAGCATCTAGTGTGAGAATCTGATTTTTGTTTATGTTTACCTTTGTTTTAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGTAAACATCAGCATAACTTTGCCATGAGTTTGTTTGCTGATCTGATGAAGGCCATTAAACCACCAGTTACAAGTAATTCAGTTATGGATTAATATCTTTACTGTTTTCTCTCTTACGTTGGCCCATTTTTGTAATTAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGCTTTGGAGGGGGTGGCGGCTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGTGGTTATAGTGGTGGAGGTTATAATCGCAGCAATGCATCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

mRNA sequence

ATGGCCGTCAACCAAAAAAGTTACAGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGAAAGGAAGAAGAGAACGAACAAAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGCTTTGGAGGGGGTGGCGGCTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGTGGTTATAGTGGTGGAGGTTATAATCGCAGCAATGCATCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

Coding sequence (CDS)

ATGGCCGTCAACCAAAAAAGTTACAGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGAAAGGAAGAAGAGAACGAACAAAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGCTTTGGAGGGGGTGGCGGCTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGTGGTTATAGTGGTGGAGGTTATAATCGCAGCAATGCATCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

Protein sequence

MAVNQKSYSPIEELHVNPNQYISHPTKGRRERTKVVNMAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERARGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGGDDFLGGGKYGDEDNDDDYAKRA

Homology

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BLAST of Cla97C04G078660 vs. NCBI nr
Match: KAG6572904.1 (Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.8 bits (634), Expect = 4.3e-62
Identity = 158/228 (69.30%), Postives = 168/228 (73.68%), Query Frame = 0


Query: 26  TKGRRERTKVVNMAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLS 85
           +K  RERTKVV+MAFLS+VGKIFSQ SASR+GS  QPS+LSIFQ  RFMSSSK+FVGGLS
Sbjct: 46  SKKGRERTKVVSMAFLSKVGKIFSQSSASRVGSISQPSQLSIFQAIRFMSSSKVFVGGLS 105

Query: 86  YGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHG 145
           YGTDD SLREAF KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHG
Sbjct: 106 YGTDDHSLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHG 165

Query: 146 RRIRCNFATERARGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGG--- 205
           RRIR NFATER+R       G F GGGGY GGGG GY GGGG     YNRS+ASQGG   
Sbjct: 166 RRIRVNFATERSR-------GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNY 225

Query: 206 --------------------------DDFLGGGKYGDEDNDDDYAKRA 225
                                     DDFLGGGK  DEDN+DDYAKRA
Sbjct: 226 FSADSGSDFTSNHQSGGGLDSGDNTRDDFLGGGKSEDEDNNDDYAKRA 265

[Close]

BLAST of Cla97C04G078660 vs. NCBI nr
Match: XP_022994220.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-60
Identity = 152/216 (70.37%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  R MSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRLMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGG--------------- 217
           R       G F GGGGY  GGG GY GGGGY    YNRS+ASQGG               
Sbjct: 121 R-------GSFVGGGGYNSGGGGGYSGGGGYGSVDYNRSSASQGGDNYFSADSGSDFTSN 180

Query: 218 --------------DDFLGGGKYGDEDNDDDYAKRA 225
                         DDFLGGGKYGDEDN+DDYAKRA
Sbjct: 181 HQSGGGLDSGDNTRDDFLGGGKYGDEDNNDDYAKRA 209

[Close]

BLAST of Cla97C04G078660 vs. NCBI nr
Match: XP_022137596.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 241.1 bits (614), Expect = 9.1e-60
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ S++RIGSD +P   SIFQT RFMSSSK+FVGGLSYGTDDQSLREAF
Sbjct: 1   MAFLSKVGKIFSQ-SSTRIGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDL GRRIR NFATER+
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGY--SGGGYNRSNASQ------------GGD 217
           R GGFGGGGG  GGGGYGGGG +GYGGGGGY   GGGY  S A+               D
Sbjct: 121 R-GGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAANDQSQSFSGDGDGNQD 180

Query: 218 DFLGGGKYGDE-DNDDDYAKRA 225
           DFLGGGKY DE DN+DDYAKRA
Sbjct: 181 DFLGGGKYRDEDDNNDDYAKRA 197

[Close]

BLAST of Cla97C04G078660 vs. NCBI nr
Match: XP_022954706.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata] >KAG7012092.1 Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 5.9e-59
Identity = 152/216 (70.37%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  RFMSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGG--------------- 217
           R       G F GGGGY GGGG GY GGGG     YNRS+ASQGG               
Sbjct: 121 R-------GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNYFSADSGSDFTSN 180

Query: 218 --------------DDFLGGGKYGDEDNDDDYAKRA 225
                         DDFLGGGK GDEDN+DDYAKRA
Sbjct: 181 HQSGGGLDSGDNTRDDFLGGGKSGDEDNNDDYAKRA 208

[Close]

BLAST of Cla97C04G078660 vs. NCBI nr
Match: XP_038895325.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 7.9e-56
Identity = 144/188 (76.60%), Postives = 157/188 (83.51%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFS+ SASRIGSD Q S LSIFQTFRFMS S++FVGGLSYGTDDQ LRE F
Sbjct: 1   MAFLSKVGKIFSRNSASRIGSDLQASNLSIFQTFRFMSGSRVFVGGLSYGTDDQGLREEF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
           AKYG+VVEA+V++DRD+GRSRGFGFVTF ANEEASSAIQALDGQ+LHGRRIRCN ATER 
Sbjct: 61  AKYGEVVEAKVVMDRDSGRSRGFGFVTFAANEEASSAIQALDGQELHGRRIRCNHATERP 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGY-SGGGYNRSNASQGGDDFLGGGKYGDEDN 217
           RGGG GG GG G GGGYGGGGGS YGGGG + SGGGY             GGGKYG+ED 
Sbjct: 121 RGGG-GGYGGGGYGGGYGGGGGS-YGGGGNFGSGGGY-------------GGGKYGEED- 172

Query: 218 DDDYAKRA 225
           D+DYAKRA
Sbjct: 181 DNDYAKRA 172

[Close]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.0e-39
Identity = 104/180 (57.78%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+ G I  Q +  ++ +    S  S+FQ  R MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VV+ RVILDR+TGRSRGFGFVTF ++E ASSAIQALDG+DLHGR ++ N+A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 158 RGGGFGGGGGFGGGGGYG-----GGGGSGYGGGGGYSGGGYNRSNASQGGDDFLGGGKYG 213
            GGGFGGGG  GGGGGYG     GGG  GYGG GGY GG       S GG      G YG
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAGGYG 180

[Close]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-33
Identity = 104/181 (57.46%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VG++FSQ S+    S       S+ Q+ R MSSSKIFVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
           +KYG+VV+A++I+DR+TGRSRGF FVTF + EEAS+A+Q LDGQDLHGRRIR N+ATE  
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATE-- 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGG------SGYGGGGGYSGGGYNRSNASQGGDDFLGGGKY 213
           RG GFGG G  G GGGYG   G       GYGGG G  GG  + S  + GG  + G   Y
Sbjct: 121 RGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSY 172

[Close]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++G +  Q     I S+      S+  + R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
           A +GDVV+A+VI+DR+TGRSRGFGFV FN    A++AI  +DG++L+GR IR N A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 158 ARGGGFGGGGGF-GGGGGYGGGGGSGYGGGGGYSGGG 193
           +    +GGGGG+ GGGGGYGGGGG   GGGGGY GGG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGG 152

[Close]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-23
Identity = 83/144 (57.64%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 78  KIFVGGLSYGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQA 137
           + FVGGL + TDDQSL+ AF+KYGDV+++++I DR+TGRSRGFGFVTF ++E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 138 LDGQDLHGRRIRCNFATERAR--GGGFGGGGG-------FGGGGGYGGGGGSGYGGGGGY 197
           ++GQDL GR I  N A  R    GGGFGGGGG        GGGGGYGGGGG GYGGG   
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGG-GYGGGRSG 126

Query: 198 SGGGYNRSNASQGGDDFLGGGKYG 213
            GGGY   +   GG    GGG YG
Sbjct: 127 GGGGYGSRDGGGGGYGG-GGGGYG 148

[Close]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-22
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 78  KIFVGGLSYGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQA 137
           + FVGGL++ TD++SL  AF+++G++V++++I DR+TGRSRGFGFVTF   +    AI+ 
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 138 LDGQDLHGRRIRCNFATER---ARGGGFGGGGGFGGGGGYGGGGGSGYGG----GGGYSG 197
           ++GQDL GR I  N A  R   A GGG GGGGG+ GGGGYGGGGG GYGG    GGGYSG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGG-GYGGGRREGGGYSG 128

Query: 198 GGYNRSNASQGGDDFLGGGK 211
           GG   S+   GG  + GGG+
Sbjct: 129 GGGGYSSRGGGGGGYGGGGR 147

[Close]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL
Match: A0A6J1K0M4 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111490023 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.8e-61
Identity = 152/216 (70.37%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  R MSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRLMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGG--------------- 217
           R       G F GGGGY  GGG GY GGGGY    YNRS+ASQGG               
Sbjct: 121 R-------GSFVGGGGYNSGGGGGYSGGGGYGSVDYNRSSASQGGDNYFSADSGSDFTSN 180

Query: 218 --------------DDFLGGGKYGDEDNDDDYAKRA 225
                         DDFLGGGKYGDEDN+DDYAKRA
Sbjct: 181 HQSGGGLDSGDNTRDDFLGGGKYGDEDNNDDYAKRA 209

[Close]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL
Match: A0A6J1C734 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009002 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 4.4e-60
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ S++RIGSD +P   SIFQT RFMSSSK+FVGGLSYGTDDQSLREAF
Sbjct: 1   MAFLSKVGKIFSQ-SSTRIGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDL GRRIR NFATER+
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGY--SGGGYNRSNASQ------------GGD 217
           R GGFGGGGG  GGGGYGGGG +GYGGGGGY   GGGY  S A+               D
Sbjct: 121 R-GGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAANDQSQSFSGDGDGNQD 180

Query: 218 DFLGGGKYGDE-DNDDDYAKRA 225
           DFLGGGKY DE DN+DDYAKRA
Sbjct: 181 DFLGGGKYRDEDDNNDDYAKRA 197

[Close]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL
Match: A0A6J1GRM7 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111456883 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.8e-59
Identity = 152/216 (70.37%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  RFMSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNASQGG--------------- 217
           R       G F GGGGY GGGG GY GGGG     YNRS+ASQGG               
Sbjct: 121 R-------GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNYFSADSGSDFTSN 180

Query: 218 --------------DDFLGGGKYGDEDNDDDYAKRA 225
                         DDFLGGGK GDEDN+DDYAKRA
Sbjct: 181 HQSGGGLDSGDNTRDDFLGGGKSGDEDNNDDYAKRA 208

[Close]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL
Match: A0A0A0LQL8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-53
Identity = 137/187 (73.26%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SAS I S FQPS LS+FQT RFMSSSK+FVGGLSYGTDDQ L EAF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVI+DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDL GRRIRC++AT+RA
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGYGGG-GGYSGGGYNRSNASQGGDDFLGGGKYGDEDN 217
            GGG GGGGG+GGGGGYGGG   GYGGG GGY GGGY             GGG YG    
Sbjct: 121 SGGG-GGGGGYGGGGGYGGG---GYGGGRGGYGGGGY-------------GGGGYGGGGG 170

Query: 218 DDDYAKR 224
            DD+A R
Sbjct: 181 GDDFADR 170

[Close]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL
Match: A0A6J1I6W1 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471699 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-47
Identity = 113/143 (79.02%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGK+F + SAS I SD QPSKLSIFQ+ R MSSSK+FVGGLSYGTDDQSLREAF
Sbjct: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVI DRDTGRSRGFGFVTF ANEEASSAIQALDGQDLHGR IR NFATER+
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 158 RGGGF-GGGGGFGGGGGYGGGGG 180
           RGGG+ GG  G+     Y GGGG
Sbjct: 121 RGGGYDGGSSGYNRSSSYQGGGG 143

[Close]

BLAST of Cla97C04G078660 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 162.2 bits (409), Expect = 5.0e-40
Identity = 104/180 (57.78%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+ G I  Q +  ++ +    S  S+FQ  R MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VV+ RVILDR+TGRSRGFGFVTF ++E ASSAIQALDG+DLHGR ++ N+A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 158 RGGGFGGGGGFGGGGGYG-----GGGGSGYGGGGGYSGGGYNRSNASQGGDDFLGGGKYG 213
            GGGFGGGG  GGGGGYG     GGG  GYGG GGY GG       S GG      G YG
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAGGYG 180

[Close]

BLAST of Cla97C04G078660 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34
Identity = 104/181 (57.46%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VG++FSQ S+    S       S+ Q+ R MSSSKIFVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
           +KYG+VV+A++I+DR+TGRSRGF FVTF + EEAS+A+Q LDGQDLHGRRIR N+ATE  
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATE-- 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGG------SGYGGGGGYSGGGYNRSNASQGGDDFLGGGKY 213
           RG GFGG G  G GGGYG   G       GYGGG G  GG  + S  + GG  + G   Y
Sbjct: 121 RGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSY 172

[Close]

BLAST of Cla97C04G078660 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-28
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++G +  Q     I S+      S+  + R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
           A +GDVV+A+VI+DR+TGRSRGFGFV FN    A++AI  +DG++L+GR IR N A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 158 ARGGGFGGGGGF-GGGGGYGGGGGSGYGGGGGYSGGG 193
           +    +GGGGG+ GGGGGYGGGGG   GGGGGY GGG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGG 152

[Close]

BLAST of Cla97C04G078660 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-27
Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++  I  QG    +         S+  + R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
             +G+V EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR+IR N ATER+
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGY 183
                     FGGGGGYGGGGG GY
Sbjct: 121 S----APRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of Cla97C04G078660 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-27
Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++  I  QG    +         S+  + R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
             +G+V EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR+IR N ATER+
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 158 RGGGFGGGGGFGGGGGYGGGGGSGY 183
                     FGGGGGYGGGGG GY
Sbjct: 121 S----APRSSFGGGGGYGGGGGGGY 136

The following BLAST results are available for this feature:

BLAST of Cla97C04G078660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572904.1	4.3e-62	69.30	Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022994220.1	1.4e-60	70.37	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_022137596.1	9.1e-60	77.72	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]
XP_022954706.1	5.9e-59	70.37	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata] >KAG...	[more]
XP_038895325.1	7.9e-56	76.60	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]

BLAST of Cla97C04G078660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	7.0e-39	57.78	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	2.6e-33	57.46	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	1.1e-26	54.78	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	2.4e-23	57.64	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P49311	1.6e-22	55.00	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Cla97C04G078660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0M4	6.8e-61	70.37	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1C734	4.4e-60	77.72	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A6J1GRM7	2.8e-59	70.37	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A0A0LQL8	2.3e-53	73.26	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV...	[more]
A0A6J1I6W1	9.5e-47	79.02	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Cla97C04G078660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	5.0e-40	57.78	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	1.8e-34	57.46	glycine-rich RNA-binding protein 5	[more]
AT4G13850.1	7.5e-28	54.78	glycine-rich RNA-binding protein 2	[more]
AT3G23830.1	6.3e-27	51.03	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	6.3e-27	51.03	glycine-rich RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 78..151 e-value: 3.4E-29 score: 113.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 79..149 e-value: 7.4E-23 score: 80.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 77..155 score: 21.855528
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..213 e-value: 9.5E-34 score: 118.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..224
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 38..212
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 38..212
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 73..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G078660.2	Cla97C04G078660.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding