Cla97C04G078320 (gene) Watermelon (97103) v2.5

Overview
NameCla97C04G078320
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionGTPase IMAP family member 1, putative
LocationCla97Chr04: 25882971 .. 25883502 (-)
RNA-Seq ExpressionCla97C04G078320
SyntenyCla97C04G078320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGCAGTGGGAAAAATTGATGGTTACAATTTGTGTAACCTCAGCCATAGCCATAGCCACCGTTTCCCTCCAAATTGAAACCAAGTTATCTTTAATGTTTCATTTTCTGTCGATTACGTTAATGGGTTGCTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTACTGTTTTGGTGGGTTCTGGTTGGTGACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATCTAAGTTTCAAATTGTAACATTGGTCATCTACCTCCTCTTCATGGTCATCATTCCAATATGCTATTTCTCTTAGTCCTTGAATTCCACAAGAAGGCGTTGCATTGCATGGGAGATGTTTTGATCATATGTGTGTGTGTGTATGTAAATTAGTGGGCATTTGTATTAGTGTAATAGGAGCCTACCCTTTTCCTCTACTGTATGTCTTAAATTTGTATATTTTGGTTTAATTTCTATAGTTCTCAGACATAGTTGTAATTTGGTTACTATAA

mRNA sequence

ATGGTAATGCAGTGGGAAAAATTGATGGTTACAATTTGTGTAACCTCAGCCATAGCCATAGCCACCGTTTCCCTCCAAATTGAAACCAAGTTATCTTTAATGTTTCATTTTCTGTCGATTACGTTAATGGGTTGCTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTACTGTTTTGGTGGGTTCTGGTTGGTGACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATCTAAGTTTCAAATTGTAACATTGGTCATCTACCTCCTCTTCATGTTCTCAGACATAGTTGTAATTTGGTTACTATAA

Coding sequence (CDS)

ATGGTAATGCAGTGGGAAAAATTGATGGTTACAATTTGTGTAACCTCAGCCATAGCCATAGCCACCGTTTCCCTCCAAATTGAAACCAAGTTATCTTTAATGTTTCATTTTCTGTCGATTACGTTAATGGGTTGCTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTACTGTTTTGGTGGGTTCTGGTTGGTGACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATCTAAGTTTCAAATTGTAACATTGGTCATCTACCTCCTCTTCATGTTCTCAGACATAGTTGTAATTTGGTTACTATAA

Protein sequence

MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMFSDIVVIWLL
Homology
BLAST of Cla97C04G078320 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-24
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQ 60
           M+MQWE +MVT C+ +AIAIATVS+QI+TKLS MF FLS  LMGCF FT  AK+I  K Q
Sbjct: 58  MLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLI--KHQ 117

Query: 61  RVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMF 104
           RVS ILY  GGF  VTAFFIAIAIPYA  FQI+TL +YL+F+F
Sbjct: 118 RVSLILYFLGGFCFVTAFFIAIAIPYAFHFQILTLALYLVFLF 158

BLAST of Cla97C04G078320 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQ 60
           MV +W+ ++V  CV+SAIAIATVS+QIE KL  +F+FLS+TL+ CF F A  K+     +
Sbjct: 39  MVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKSILK 98

Query: 61  RVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMFSDIVV 109
           RVS+ILYC GG   VTA FIA AIPYAS FQI+  +IYL+F    ++V
Sbjct: 99  RVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIYLIFWLMFMLV 146

BLAST of Cla97C04G078320 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQ 60
           MV +W+ +++  CV+SAI IATVS+ I+T+L   F  LSI ++ CFV    A++IN   +
Sbjct: 15  MVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFE 74

Query: 61  RVSQILYCFGGFWLVTAFFIAIAIPY 87
            +S+ILYC GG    ++ FIA AIPY
Sbjct: 75  TLSKILYCVGGLLYASSCFIATAIPY 100

BLAST of Cla97C04G078320 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-07
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 4   QWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVS 63
           +W +L VT C+ SAI IA VS+Q+ ++LS  FH LS+T++  F    ++K I  K    +
Sbjct: 59  EWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTILLAFASFVVSKFIKFKFLVSA 118

Query: 64  QILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLL 101
           Q+L  FG F+ +TAFF+AI IP+    +  +  +Y +
Sbjct: 119 QVLENFGVFFTMTAFFMAITIPFPLYLKFASWAVYTI 155

BLAST of Cla97C04G078320 vs. NCBI nr
Match: KAF3437981.1 (hypothetical protein FNV43_RR20737 [Rhamnella rubrinervis])

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-06
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 5   WEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRVSQ 64
           W K++V  C  SAI IA +S Q+ + L  +FHFLS++++  FV   ++K+IN K    ++
Sbjct: 169 WAKIIVCFCFVSAIEIALLSAQLHSHLFPIFHFLSLSILFGFVSLLISKLINSKFPNTAR 228

Query: 65  ILYCFGGFWLVTAFFIAIAIP------YASKFQ 92
           +L     +++VTAFFIAI+IP      Y  KF+
Sbjct: 229 VLEAASVYFVVTAFFIAISIPDLYEASYKEKFK 261

BLAST of Cla97C04G078320 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIET--KLSLMFHFLSITLMGCFVFTALAKVINVK 60
           MV +W++++V +CV+SAI IATVS+QIET  +L   F FLSI ++ CF F   AK+    
Sbjct: 43  MVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPI 102

Query: 61  QQRVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMF 104
            + VS+ILYC GGF  VTAFFIA AIP+A  FQI+  ++YLLF F
Sbjct: 103 FKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCF 147

BLAST of Cla97C04G078320 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQ 60
           MV + +++++  C++SAI IATVS+Q +TKL   F FLSI ++ CF+    A++I+   +
Sbjct: 30  MVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSIFK 89

Query: 61  RVSQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMFSDIVVI 110
            +S+ILYCFGGF   T  FIA AIPY + F I+ +V+Y +F    +++I
Sbjct: 90  TLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLI 138

BLAST of Cla97C04G078320 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.2e-11
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 1   MVMQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQ 60
           MV +W+ +++  CV+SAI IATVS+ I+T+L   F  LSI ++ CFV    A++IN   +
Sbjct: 29  MVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFE 88

Query: 61  RVSQILYCFGGFWLVTAFFIAIAIPYASKF 91
            +S+ILYC GG    ++ FIA AIPYAS F
Sbjct: 89  TLSKILYCVGGLLYASSCFIATAIPYASSF 118

BLAST of Cla97C04G078320 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 37/98 (37.76%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 3   MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRV 62
           M+W ++++  C+ SA+ IA +S+Q+ T+L  +FH  S+ ++  F    ++K IN K  R 
Sbjct: 80  MEWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILLAFASVVVSKFINPKFLRA 139

Query: 63  SQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLL 101
           +Q+L  FG F+ VTAFFIAI IP+    +  + V+Y +
Sbjct: 140 AQVLEKFGVFFTVTAFFIAITIPFPFYLKFASWVVYAI 177

BLAST of Cla97C04G078320 vs. ExPASy TrEMBL
Match: A0A7N2M5A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.8e-07
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 3   MQWEKLMVTICVTSAIAIATVSLQIETKLSLMFHFLSITLMGCFVFTALAKVINVKQQRV 62
           M W ++M+  C+ SAI IA VS+Q+  +LS  FH LS+  +  F    +++ I  K    
Sbjct: 77  MDWTEIMIGFCLASAIDIALVSVQVHAQLSATFHLLSLAFLFAFACFFVSEFIESKFLVT 136

Query: 63  SQILYCFGGFWLVTAFFIAIAIPYASKFQIVTLVIYLLFMFS 105
           +Q+L   G F+ VTAFFIAIAIP+    +  T  IY + +F+
Sbjct: 137 AQVLQKLGVFFTVTAFFIAIAIPFPLYHKFATWAIYTISVFA 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584385.16.8e-2468.93hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572911.11.2e-1755.56hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652531.14.8e-0946.51hypothetical protein Csa_013077, partial [Cucumis sativus][more]
KAF3947053.17.6e-0739.18hypothetical protein CMV_026760 [Castanea mollissima][more]
KAF3437981.14.9e-0639.78hypothetical protein FNV43_RR20737 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB62.5e-1654.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LCY28.5e-1243.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LSX44.2e-1147.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
A0A7N2R8668.7e-0937.76Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2M5A34.8e-0739.22Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34741IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 2..104
NoneNo IPR availablePANTHERPTHR34741:SF2IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G078320.1Cla97C04G078320.1mRNA