Cla97C04G078110 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G078110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	Cla97Chr04: 25640935 .. 25645312 (-)
RNA-Seq Expression	Cla97C04G078110
Synteny	Cla97C04G078110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACGAGTTTAGCTCAACGAGTAATTGGCAGGGTCTTTACTTCCAAGAAGTTGAAAATTTGATATTATATCCTCGCAATTGTTGTACTAATAAAAATAAAAAGGGTATTTCAAACTTTATAAAAAGTACTATTAAACCTTTTGAAAGTTTGATGCATATATATTTTTATTGATATTATGATCTCTGTTTATCGATATTATTTTTCTAAAGAAGAAACCACATATCTAAACCGTGTATTGTGTCCACAATTTTTTTTCTTTTGAACAAAGTACTTGAATTTGCAAATGATTTATCTTCCCACTTCATATTTATCATTTTTTATTTTATTCACATTATTAAATTATTTTGTTTAAAACTACTCTAAATATGTAATTTTTTTTATTTAAACAACATTATTCCTGAAATTACTCCTTGAAATAAAGTATAAAAATTCATGACAATAATCTATATATAATTTAACCCAGTAAAATCCATGGACGGCTCAACGGGAGAAGTTTTAGACAATAGGCGAAACGACGTCGTAAATTGATGTATGGCTGAAACGAGTGGCTAATTGCCCGGCGGAAAAGATCGCGAGAGTGGGACCCGGGATGAGTAGGATTTAGTGAAGAGAGAACCCACGCGTCGGCAACTAAGCCACTCAGTCGAAGCTCGCTTACATTTTTCTCTGAGCCACTGAAGCTGCTGCACCAAATCACTCACTCTTCATCCTTCTACCCTTCTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGGTATTCAGACTTCTACGAATTTGCTCCCCTTATTTTCTTTCCTAATCAATTCGTCTGTACTTAATCCAAATTTAGAGGAAGGATTTTGAGAAATTTCGGTTTCGTTATTGAATATTTGCATAATTCCTGGCTTTGTGGAGATTGGAGGTTTTGGCTCCTTAGAATGAGTAGAATAAAATTTATTAACCAGGGAAATCTGCGGACCATCTGCTTGTAGAATGATTGTTTTCCTGTTTGTATGAATTTTATTTTTTCTCGAAGATTGAAACAAAGTGTTGCATTATGAGGGGGAAAAACTGCAAATGGAACCAAATTGATGTTAGAGGAAGATCTGAAGCTTTTTGTTTGATCTTACAATATGCTAGTTGCAATATGTGAGGTTGCTTGATTTTTCCAATATGGGACCTGAGCAATTTTATCCCCAATCAATATTGCATTTTGAGAGATAAAACACTAAAAGGTGAATTACAATGAAGCCTTTTCTTTTCAGGTGGAACTTAGAGTATAAAGACTATAGTCTTTAAAAACTGTATACTTTTTTCACCAATATAAAGCATGACACAAAATTAATTATAAAAAGCTATCAACATTTGAGGAAGGGTCCCCAAAAATTCTCCCATTTCGTACACACCAAAGGATCCAAAAATCTGCCCTGTTGATGGCTAGCTATAATGATTTCTTCACACCATGGAAAGGATGACCCACGAAAGTGGAAGCAAGAATACCATAGATGTTGCTAAACATAATCATTGACTAACCAAAGGCATCAAACGTTAGTAACTATTGAAAAAGAAGGGAAGAAAAAGAACACGAGGTTTACGTGGAAAACCCTAGTATAGGGAGGAAAAACCACGATAGAAATTTTCTCTTTTTATTAATTTGGTACCTACAATGTACAAGAGGAGGAAAAATAAATGGAGACCCGAAATCTACAAAAAGAAAAAAATATTAGGGAATATAAAAAGAAAATACAAAATCTACAATATCCCCAAAAATCCTCTTTTATTTTCAATAGTAACCAATATTGAAAGGCAAAAGAGCAATGGGCAAAAAGATGGCATGGATGTTAAAACACATGGCATACCATAGATGTTGCTAAACATAATCATTGACTAACCAAAGGCATCCAGTGTTAGTAACTATTGAAGAAGAAGGGAAGAAAAAGAACACGAGGTTTACGTGAAAAACTCTAGTATAGGGAGAAAAAATCATGATGTTAAGCAAACGCATCACACACCAAGAAGGGGAGGGAAAAGTGGAGCATTCTTCTTTGAAGGCTGCAGTGTTGACACCCAATTACTTAGCTCCCACAAAAAGATTTAAATTTTCTTCAGATAAACTTCCTTCCAAATCACTGAATAAAGGTTGTGTTAGGTACTTAAGCACCTTGAAAAACCACACCCCAACAACCAGCTATTAAGATGAGAGAGTCAAGCTGGTGCTTAAGTACCTAACAATGGTATCAGAGTCGGTTTTCAACGTTTGGAGGGGAGCATTGACAGAGGATTCTGACCTGGTGTTTCAAAGTGAAGTACCATCGATCTAGCCGTCGGGGTGTTGGCTTTCCGGGAATGAGGTATTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTTATTATAATGGGATGACCAATGCGGTACTTAAGTGGCTTGGCTCTCTCACCTCAATAGGTGGTTTTGGAATGTGGTTCTCCAAGGTGTTAAGTACCTAACATGTTGTTCGGAGATGAGACCTTACTCCTTAGCATGTACAAAATCCTTCATTAATAAAAGTGCCATGAAAGCTTTAGAGGTTCTACTTCAAGTCTGCACGCTAAAGATTTAATAACATAGAATTTAATACTAATGCAACCCACATTACATAAAAGACATAGAAAAATATGATGCATTAATGCTTGTGTAAGATTCAACTGGTTAAAGCATATACTGTTGACTTAGAGGTCAAAAGTTCAAATCCTCGACCCCCACTTATTGTTGACTAGTTTGTGAATCATGCATATGGACAACCATAACAGAGGTTCATTGTAAGAACTAAATTTGCAAGGATCTTAGGTCCTATTTATATACTCTTCAAGACTCTTTAAATTTCTAGTTCTGAGATAAATGTTAATGGCCTATTCTAAACGTTAATATTCTTGGATAATCTTGGACGACAAACTGGCACTGATTGTTAAATTTTACATGGTCCATAATCGACCAGATCCTGGGTTGCATTTAATTAAAAACTTCTTGCATTTAACACATGACCAATCAGTGAACACTTAGGAATATATATATTAATAAATGAGTTCAGGATCAGAATCAGCTTTGGATTACAATATTCATAATCATGGTACACTTTTTTTACCTACAAAAGTGTGGAGGCTGTTCATTTTATTATTCGTTGGAACTTGCATGACATCTTCATACAATATTACCCATTTATCATTGCTACTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGTATAAAACAGTTTTCCTTTGAATTTATGTCACGTATAAGCAACTAAAGATCTGTATGCACTAGAGACGGTTCAAACTCCAAAATAATTTTGATGTTCAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAAATTATGTAATGTACTCTTTTGCTCCCCTTAGTTATCAGCCATATTAAAATTGCTTGTCCTCAACTGCTACCGTATTGCAAGCTGCACCTATGTACATAAATAGAGATACTTCATAAACAAATAATTTATGAATACAATGTTCACTCTAGTATACAATGTTCACTCTAGTTATGTTACGAGTTATACACACAAACACATTTTCCTTTTCAGTAAACTTTTTTTACTTGACCTCCATGTGGCTTTTTGAGCACTCATGAACGCAAGGCATAGAGTGCGATCTTACTTTTACTTGGTAGGAAGTAGTATGAGTAAATTTTTGCAATGTTCTTCCCTTGGTCCCACCCCCATACATACATTGAGAAGATTTCTAAGAATGCTAGTTCTCTCTGTTGCTTGCTTGGGATAAAACCCATCGGTACAAGAAATATTTATGATACAGATTGAGACGTCAAGGACTGAAACTCTTTATTTACAGAGTTTCCATTTCCAGTCCTTCCAGTTAAGGGAAGTAGCTCAGAACGGCTGGAGTTTCCAGTTCGCAGTTCCAGTCCTTCTAGAGGGCAAAGAGAGTAA

mRNA sequence

ATGGCAAAAACGAGTTTAGCTCAACGACTGCTGCACCAAATCACTCACTCTTCATCCTTCTACCCTTCTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGAGTTTCCATTTCCAGTCCTTCCAGTTAAGGGAAGTAGCTCAGAACGGCTGGAGTTTCCAGTTCGCAGTTCCAGTCCTTCTAGAGGGCAAAGAGAGTAA

Coding sequence (CDS)

ATGGCAAAAACGAGTTTAGCTCAACGACTGCTGCACCAAATCACTCACTCTTCATCCTTCTACCCTTCTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGAAACCGGAGCATCTTAATGATGTTATCAGTTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGAGTTTCCATTTCCAGTCCTTCCAGTTAAGGGAAGTAGCTCAGAACGGCTGGAGTTTCCAGTTCGCAGTTCCAGTCCTTCTAGAGGGCAAAGAGAGTAA

Protein sequence

MAKTSLAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDEFPFPVLPVKGSSSERLEFPVRSSSPSRGQRE

Homology

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BLAST of Cla97C04G078110 vs. NCBI nr
Match: XP_022136972.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 282.3 bits (721), Expect = 3.3e-72
Identity = 144/174 (82.76%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 6   LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLS 65
           L Q  LH   H+             ERG+GSCNLRS+TSF+QP LQ N+ RNRS LMMLS
Sbjct: 23  LPQITLHSFNHT-------------ERGYGSCNLRSSTSFTQPLLQSNETRNRSTLMMLS 82

Query: 66  VAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK 125
           VAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK
Sbjct: 83  VAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK 142

Query: 126 VIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 180
           VIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASD
Sbjct: 143 VIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 183

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BLAST of Cla97C04G078110 vs. NCBI nr
Match: KAG7012114.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.8 bits (660), Expect = 4.0e-65
Identity = 134/167 (80.24%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 30  GERGHGSCNLRSTTSFSQPFLQPNQA-----------------RNRSILMMLSVAELGRG 89
           GE GHGSC+LRST SF+ PFLQ +QA                 RNRSIL MLSVAELG+G
Sbjct: 30  GESGHGSCDLRSTASFTLPFLQFHQARIRLSCAWDKYYFHKQCRNRSILTMLSVAELGKG 89

Query: 90  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 149
           GGLLEKP  EKTTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+
Sbjct: 90  GGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTV 149

Query: 150 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 180
           DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 150 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 196

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BLAST of Cla97C04G078110 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 2.7e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY
Sbjct: 31  QCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

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BLAST of Cla97C04G078110 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 246.1 bits (627), Expect = 2.7e-61
Identity = 123/139 (88.49%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 41  STTSFSQPFLQPNQARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKT 100
           S+T     +    Q RNRS+LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRK RKT
Sbjct: 18  SSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKLRKT 77

Query: 101 APPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAED 160
           +PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAED
Sbjct: 78  SPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAED 137

Query: 161 HCMQLRGNGLLSSIEPASD 180
           HCMQLRGNGLLSSIEPASD
Sbjct: 138 HCMQLRGNGLLSSIEPASD 156

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BLAST of Cla97C04G078110 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+
Sbjct: 31  QCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNF 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

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BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-52
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 57  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNK 116
           NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 117 REYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIE 176
           REYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+E
Sbjct: 94  REYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVE 153

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BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 73  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 132
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 133 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 177
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP 159

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BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 98  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 157
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 158 AEDHCMQLRGNGLLSSIEP 177
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 98  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 157
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 158 AEDHCMQLRGNGL 171
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 77  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDN 136
           E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 137 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 177
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Cla97C04G078110 vs. ExPASy TrEMBL
Match: A0A6J1C6X4 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.6e-72
Identity = 144/174 (82.76%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 6   LAQRLLHQITHSSSFYPSSSRPSEGERGHGSCNLRSTTSFSQPFLQPNQARNRSILMMLS 65
           L Q  LH   H+             ERG+GSCNLRS+TSF+QP LQ N+ RNRS LMMLS
Sbjct: 23  LPQITLHSFNHT-------------ERGYGSCNLRSSTSFTQPLLQSNETRNRSTLMMLS 82

Query: 66  VAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK 125
           VAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK
Sbjct: 83  VAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMK 142

Query: 126 VIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 180
           VIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASD
Sbjct: 143 VIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 183

[Close]

BLAST of Cla97C04G078110 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRS LMMLSVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY
Sbjct: 31  QCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cla97C04G078110 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.4e-61
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRS LMM+SVAELG+GGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+
Sbjct: 31  QCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNF 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cla97C04G078110 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.4e-60
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRS LMM+SVAELG+GGGLLEKP IEKTTPGRESEFDVRKSRKT+PPYRVLLHNDN+
Sbjct: 31  QCRNRSALMMISVAELGKGGGLLEKPAIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNF 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cla97C04G078110 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.6e-59
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 54  QARNRSILMMLSVAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 113
           Q RNRSIL MLSVAELG+GGGLLEKPT EKTTPGRESEF+VRKSRK APPYRVLLHNDN+
Sbjct: 31  QCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNH 90

Query: 114 NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 173
           NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS
Sbjct: 91  NKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 174 IEPASD 180
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cla97C04G078110 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 207.6 bits (527), Expect = 9.7e-54
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 57  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNK 116
           NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 117 REYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIE 176
           REYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+E
Sbjct: 94  REYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVE 153

[Close]

BLAST of Cla97C04G078110 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-33
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 57  NRSILMMLSV-AELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNK 116
           NRSILM LS  A LG+GGG+L+KP IEKTTPGRESEFD+RKS+K APPYRV+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 117 REYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIE 176
           REYVVQVLMK                               DAE HCMQLRGNGLLSS+E
Sbjct: 94  REYVVQVLMK------------------------------ADAEQHCMQLRGNGLLSSVE 124

The following BLAST results are available for this feature:

BLAST of Cla97C04G078110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136972.1	3.3e-72	82.76	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
KAG7012114.1	4.0e-65	80.24	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_022136971.1	2.7e-61	96.83	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	2.7e-61	88.49	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	1.3e-60	95.24	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]

BLAST of Cla97C04G078110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	1.4e-52	83.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	53.85	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	4.9e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.3e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	2.8e-13	42.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Cla97C04G078110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6X4	1.6e-72	82.76	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
A0A6J1C511	1.3e-61	96.83	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A1S3C561	6.4e-61	95.24	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	2.4e-60	94.44	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1K0P0	4.6e-59	93.65	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of Cla97C04G078110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	9.7e-54	83.47	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	5.6e-33	61.98	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 100..167 e-value: 2.1E-18 score: 65.9
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 98..176 e-value: 4.2E-21 score: 76.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 98..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..50
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 54..179
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 54..179
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 84..178 score: 15.126878

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G078110.2	Cla97C04G078110.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity