Cla97C04G076590 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G076590
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Splicing factor U2af small subunit B-like
Location	Cla97Chr04: 24157450 .. 24160474 (+)
RNA-Seq Expression	Cla97C04G076590
Synteny	Cla97C04G076590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATAGGAGCCTGTAGACATGGAGATCGGTGCTCTAGGCTTCACACCAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAGGGCCAAGCCCTTGATCCCCGCAAGGTTCAAGATCACTTTGAGGTATCTACTCCCTGCTGTTTCTCTCCCCTTTCATTGATTTACATTTATGTATTTGATTTCGGAACTTGAATCTTCTCGACGCTGAAACAGTTTTCTCCCTTTCCTTCTTTTGCAACCTGGAATGTAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATACGGAGATCTCGAAAGCTTAAATATTTGTGATAATTTGGCTGACCATATGGTATGTATACTTCCACTTTTTAAATTGAAGGGTATATTTGGATCCGTGTTACTGACTGGTTTCGTTTTAAATCCGTGGACAGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCCCTTCACAATCTTAATGGACGCTTTTATGCAGGTTTAATGTCTTATGCTTAAAAATATATATATATATTTCCTTGTGGGTTTTCTTTTTACGATAAAATCAATCTCGTGGATGCTGTATGAATACTCTTAGGGTTGCTTAGTGTTGCGAGGATCGAAATATTTTATAGCCAGTTTTTACCCCGACTCTCTATGTGATGAATTATTCAAGATAAATCCTAATTCGTTCTATTCAAGTATTTCTAATATGACTTAATGAATTTTATTTTGGATTCTTGGTTCTAATCAAAGATTTATCTCTTTTACTTTTCATTGTTGAAAATCTCTTCATCACCTTTCCTGGATAATCACTAGTCTCACTGTCAGACAAGGAAATAAAAGTATTAGAAGATTCGTGTACACAATGATTGGTTGATTCAATGCTGATAATGTAGTTATACGTTTACAAGTTTGATGTGCAAGTTTTGAAATCAATAATGACCTTGCAAGCTTGGTTTGGAGGTTTGATGGAGTTTTCTCAAAGGTAGTAAACTGTAAACTTGGACCAAGGACCAACTAACCCTATTTTTAAAAATATACTTGTGGCTTTCTATTATTATATCGGTGGATATACTCTTTGATCAGTGGTTGCTAAAAGGAAAAAAATAGTTGCTATACAATCTTCACTATTCGTTTGTGCCTAAGATGGCCCAGGCATGTAGTTACTAGGTCTTATTTTTCTAATTTTTGGTAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAACGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGGTATATCATCATCATGATTCCTTTGTTTTGCTTGAAAAAGAATTGGTTAGCTAATGATCCACATGCTCTTTGTTGTTTTTAGAGAGTTGAGAAGACGTTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGTCAAAGTCGCAGCCCCCACAAGCATCATGGATATGATGAACGTCCCCACGGTGGTGGTCGTGGACGTGGACCTAGTAGAAGAGATGGAGATAAGGACCCTCGGTATCATGATAGAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGAGGACGGAGTCGGAGCCCTGGAGGGAGGAGGAATAGAAGTCCGGTTAGGGAAAGTAGTGCTGAAAGACGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAACGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTTGCACAAAATGAAGATGAATTCGATCCTTCTAAGCAGTACTAGAGAAAATGGTGGATGCCGTCCTTGCCTGAAAGAAATATTTCTGGTTTGCTTCTGCCCTTTTATTGGTTCAATATAGGGGCCATAGTAGAATGCTTTCCCCTTTATTAATAAAACAGCCCATTCTCTAAAAGAAGTAGCTCACTGCCCATTTCCACTGTGCAGGTGGAGGACAGGTTCCCTGTCACGTGTTATTGATTGTGAATTCCAGTTTTGTTAACCTCGTCTCTTTCACCCTAAAAAAGAAAATAAATAGGATAGAACTCGTTGTTAGTGAGTAACCCTCTTAGAAAATTCTTTAATATTCTATACCATTTTGGAATTGTTCACAGCCATCCCTATTCATTTTTCCTTTTGTCTTTTCATTGTTCCTTGGTCGTTCACCTTAGTCGGAACCCATTACCCCATCTTTATGGGAATTACAGGATGAAATAAAACCTTATATCAGCTAAAAGTAGGACTAGTGTATGTAGTGCTTAACCTGCAAAAAGTCTTGAGAAAAGGTTTCTTACAAACCATTTTTAGTTTTACTTCTCTTTTTCCCTTTCCTTAAGCATTCTGTTCATCACTTTAACATAAAGAGCAAGACCAAGGTTTTAGAACCAGCCTTCATGTTTGCTGATGGTTATCACTTTCTTAATTATACAGGTTAATCTACAAAACAATGTTTAATACGTCTGGCATTTATTATATTATTTTCTACCCCTCAAAATTTACTCGGTATTTCCTCCCATTGGGTTTCTTGAGTTCTGGTTTACATTTTTAAACTAATGTTTTTCTAAAAACTTCTTGTAGAAGATATATTCGTACCTAAAGCAGAAGAGCTTGTTGTAGGTCTAAGTGAATGTTATTCCTGTTCATGCTCTCTTAACAGGAAAAATAGAATTAGAAGCGCCTTGTGGTCATGACAGTTTATTATTTGTATATGGATATTGAATTTTCTTTATGTTTCTTACATATTCTGCGAGTTTTGCAGGTTCAGGTTTTCCTGCTTGCCCAAATACTTCTTAGGCAGCTTACCATCGTATTCATAATACAGGTTTGGCTGTTATCTGGAGGATTTGCAGGATTTGATGTGATGTTTGGTTGA

mRNA sequence

ATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATAGGAGCCTGTAGACATGGAGATCGGTGCTCTAGGCTTCACACCAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAGGGCCAAGCCCTTGATCCCCGCAAGGTTCAAGATCACTTTGAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATACGGAGATCTCGAAAGCTTAAATATTTGTGATAATTTGGCTGACCATATGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCCCTTCACAATCTTAATGGACGCTTTTATGCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAACGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGAGAGTTGAGAAGACGTTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGTCAAAGTCGCAGCCCCCACAAGCATCATGGATATGATGAACAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGAGGACGGAGTCGGAGCCCTGGAGGGAGGAGGAATAGAAGTCCGGTTAGGGAAAGTAGTGCTGAAAGACGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAACGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTTGCACAAAATGAAGATGAATTCGATCCTTCTAAGCAGTACTAGAGAAAATGGTGGATGCCGTCCTTGCCTGAAAGAAATATTTCTGGTTTGGCTGTTATCTGGAGGATTTGCAGGATTTGATGTGATGTTTGGTTGA

Coding sequence (CDS)

ATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATAGGAGCCTGTAGACATGGAGATCGGTGCTCTAGGCTTCACACCAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAGGGCCAAGCCCTTGATCCCCGCAAGGTTCAAGATCACTTTGAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATACGGAGATCTCGAAAGCTTAAATATTTGTGATAATTTGGCTGACCATATGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCCCTTCACAATCTTAATGGACGCTTTTATGCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAACGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGAGAGTTGAGAAGACGTTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGTCAAAGTCGCAGCCCCCACAAGCATCATGGATATGATGAACAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGAGGACGGAGTCGGAGCCCTGGAGGGAGGAGGAATAGAAGTCCGGTTAGGGAAAGTAGTGCTGAAAGACGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAACGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTTGCACAAAATGAAGATGAATTCGATCCTTCTAAGCAGTACTAGAGAAAATGGTGGATGCCGTCCTTGCCTGAAAGAAATATTTCTGGTTTGGCTGTTATCTGGAGGATTTGCAGGATTTGATGTGATGTTTGGTTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGGLEAVALGIEEDGVGALEGGGIEVRLGKVVLKDGLRLNSGTGTGKRQITVVIIRMSRMLVEAMTLHKMKMNSILLSSTRENGGCRPCLKEIFLVWLLSGGFAGFDVMFG

Homology

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BLAST of Cla97C04G076590 vs. NCBI nr
Match: KAG6604370.1 (Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442.2 bits (1136), Expect = 3.9e-120
Identity = 232/321 (72.27%), Postives = 245/321 (76.32%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANAL NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALQNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGGLEAVALGIEEDGVGALEGGGIEVRLG 240
           RRRLFGRSR RRSRS+SQSRSPH+HHG+D++  G         +                
Sbjct: 181 RRRLFGRSRHRRSRSQSQSRSPHRHHGHDDRPHGGRGRGPSRRDGDKDPRYHDRSRRPRS 240

Query: 241 KVVLKDGLRLNSGTGTGKRQITVVIIRMSRMLVEAMTLHKMKMNSILLSSTRENGGCRPC 300
           +     G R  S  G   R          R  +E     +   +++L     +      C
Sbjct: 241 RSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDRETADNVL----EKILDAVAC 300

Query: 301 LKEIFLVWLLSGGFAGFDVMF 322
           LK   LVWLLSGGFAGFDVMF
Sbjct: 301 LKGTLLVWLLSGGFAGFDVMF 317

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BLAST of Cla97C04G076590 vs. NCBI nr
Match: XP_038882602.1 (splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038882603.1 splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 437.6 bits (1124), Expect = 9.5e-119
Identity = 209/214 (97.66%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRSQSRSPHKHHGY+++  G
Sbjct: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYEDRPHG 214

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BLAST of Cla97C04G076590 vs. NCBI nr
Match: TYK07378.1 (enolase [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 2.1e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 460 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 519

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 520 GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 579

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 580 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 639

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 640 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 673

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BLAST of Cla97C04G076590 vs. NCBI nr
Match: XP_008462532.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_008462533.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 436.4 bits (1121), Expect = 2.1e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 214

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BLAST of Cla97C04G076590 vs. NCBI nr
Match: XP_004143302.1 (splicing factor U2af small subunit B [Cucumis sativus] >XP_011657685.1 splicing factor U2af small subunit B [Cucumis sativus] >KGN48233.1 hypothetical protein Csa_003140 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 2.1e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 214

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BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 6.6e-99
Identity = 173/218 (79.36%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSQSRSPH--KHHGYDEQAG 214
           RR+LFGR R   RR SRSRS+S SP   + H  + + G
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERG 218

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BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.7e-99
Identity = 173/216 (80.09%), Postives = 190/216 (87.96%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRRLFGRSRR-----RRSRSRSQSRSPHKHHGYDEQ 212
           RR+LFGR RR      RSRSRS+S SP      D +
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRR 216

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BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 4.5e-95
Identity = 165/216 (76.39%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           G+D QG  +DP K+Q  FEDFYED+FEELSKYG++ESL++CDN ADHM+GNVYVQFREE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K+I R+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRRLFG---RSRRRRSRSRSQSRSP-HKHHGYDEQA 213
           R+RLFG   RSRR  S  RS+S SP H    YD ++
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRS 216

[Close]

BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.9e-94
Identity = 165/234 (70.51%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ +DP K+Q+HFEDFYED++EELSK+G++E+LN+CDNLADHM+GNVYVQFREEE
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QA  A + L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I REL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGGLEAVALGIEEDGVGALEGGG 235
           RR+L+G  R RRS  RS+S SP +H   +           G    G G   GGG
Sbjct: 181 RRKLYG-GRSRRSHGRSRSPSP-RHRRGNRDRDDFRRERDGYRGGGDGYRGGGG 232

[Close]

BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-67
Identity = 128/226 (56.64%), Postives = 164/226 (72.57%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEEL-SKYGDLESLNICDNLADHMVGNVYVQFREE 120
             D    A+   ++Q+H+++F+E++F E+  KYG++E +N+CDNL DH+VGNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 EQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 180
           E A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGGLEAVALGIEED 226
           LRR L+GR RR++ RSRS+SR   +    D   GG      G E D
Sbjct: 181 LRRELYGR-RRKKHRSRSRSRE-RRSRSRDRGRGGGGGGGGGRERD 224

[Close]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL
Match: A0A1S3CH52 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103500870 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.0e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 214

[Close]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL
Match: A0A5D3C894 (Phosphopyruvate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00980 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.0e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 460 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 519

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 520 GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 579

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 580 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 639

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 640 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 673

[Close]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL
Match: A0A5A7SM18 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001450 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.0e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 26  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 85

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 86  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 145

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 146 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 205

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 206 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 239

[Close]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL
Match: A0A0A0KF96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450380 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.0e-118
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGRSRRRRSRSRS+S+SPHKHHGY+E++ G
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHG 214

[Close]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL
Match: A0A6J1HGT3 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111463415 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 2.3e-118
Identity = 207/214 (96.73%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ+LDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQSLDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYDEQAGG 215
           RRRLFGR+RRRRSRSRSQS+SPH+HHGYDE+  G
Sbjct: 181 RRRLFGRNRRRRSRSRSQSQSPHRHHGYDERPHG 214

[Close]

BLAST of Cla97C04G076590 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 362.1 bits (928), Expect = 4.7e-100
Identity = 173/218 (79.36%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSQSRSPH--KHHGYDEQAG 214
           RR+LFGR R   RR SRSRS+S SP   + H  + + G
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERG 218

[Close]

BLAST of Cla97C04G076590 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 362.1 bits (928), Expect = 4.7e-100
Identity = 173/218 (79.36%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSQSRSPH--KHHGYDEQAG 214
           RR+LFGR R   RR SRSRS+S SP   + H  + + G
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERG 218

[Close]

BLAST of Cla97C04G076590 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 361.7 bits (927), Expect = 6.2e-100
Identity = 173/216 (80.09%), Postives = 190/216 (87.96%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRRLFGRSRR-----RRSRSRSQSRSPHKHHGYDEQ 212
           RR+LFGR RR      RSRSRS+S SP      D +
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRR 216

[Close]

BLAST of Cla97C04G076590 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 258.1 bits (658), Expect = 9.6e-69
Identity = 126/166 (75.90%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 51  MYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVG 110
           MYQRPDMITPGVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNF 170
           NVYVQF+EE+QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKKISRELRRRLFGRSRR-----RRSRSRSQSRSPHKHHGYDEQ 212
           MH+K +SRELRR+LFGR RR      RSRSRS+S SP      D +
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRR 166

[Close]

BLAST of Cla97C04G076590 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-35
Identity = 67/167 (40.12%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P +       +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWE--QDEGLE 296

Query: 69  LDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHN 128
               + +  +E+FYED+  E  KYG+L +  +C N + H+ GNVYV +R  E A  A  +
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LNGRFYAGRPIIVDFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 173
           +NGR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401

The following BLAST results are available for this feature:

BLAST of Cla97C04G076590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604370.1	3.9e-120	72.27	Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_038882602.1	9.5e-119	97.66	splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038882603.1 sp...	[more]
TYK07378.1	2.1e-118	97.20	enolase [Cucumis melo var. makuwa]	[more]
XP_008462532.1	2.1e-118	97.20	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_00846253...	[more]
XP_004143302.1	2.1e-118	97.20	splicing factor U2af small subunit B [Cucumis sativus] >XP_011657685.1 splicing ...	[more]

BLAST of Cla97C04G076590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	6.6e-99	79.36	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	8.7e-99	80.09	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q9ZQW8	4.5e-95	76.39	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q6AUG0	4.9e-94	70.51	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	1.4e-67	56.64	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of Cla97C04G076590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH52	1.0e-118	97.20	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10350087...	[more]
A0A5D3C894	1.0e-118	97.20	Phosphopyruvate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7SM18	1.0e-118	97.20	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KF96	1.0e-118	97.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450380 PE=4 SV=1	[more]
A0A6J1HGT3	2.3e-118	96.73	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Cla97C04G076590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	4.7e-100	79.36	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	4.7e-100	79.36	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	6.2e-100	80.09	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	9.6e-69	75.90	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	9.1e-35	40.12	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 18..37 score: 85.68 coord: 165..177 score: 65.73 coord: 103..125 score: 65.42 coord: 130..154 score: 64.0 coord: 75..90 score: 55.97 coord: 37..57 score: 57.14
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..220
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.41 score: 19.4 coord: 13..39 e-value: 0.0065 score: 25.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..173 e-value: 3.2E-4 score: 20.5 coord: 14..37 e-value: 5.2E-7 score: 29.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 10.464717
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.112443
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 45..142 e-value: 2.2E-4 score: 30.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 5.5E-7 score: 29.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.622288
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 67..142 e-value: 4.4E-7 score: 39.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 1.5E-30 score: 107.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..209
None	No IPR available	PANTHER	PTHR12620:SF43	RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED	coord: 1..220
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 1.3196E-68 score: 207.602
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G076590.2	Cla97C04G076590.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006096	glycolytic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0000015	phosphopyruvate hydratase complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004634	phosphopyruvate hydratase activity
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding