Cla97C04G076510 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G076510
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Homeobox-leucine zipper protein
Location	Cla97Chr04: 24039469 .. 24041867 (-)
RNA-Seq Expression	Cla97C04G076510
Synteny	Cla97C04G076510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGAATAATGGCAAAACTTTCACTCCTAACTTTGTTTCTCCACCACCACATTCTTCTTCCTCTGCTTTGCTCTACAACTGCAACAACTACAACTGCAATTTCGATCACTTTCCTGGTAAACCAACTTATACATATTAATATTTACTCTATAATAATTATATTATATTCTTTCTTCTTTTTCTTTTACGAAACCTAATCTTTCTCCCTATAAACCCTATTTCTTATAGTGTTCCCAAATAGGGTTTAGGGTTTGTATTTTTTTTTTTTCCTTCTTCTAATACTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTTGCTTGTGGAGAGGTATTAGCATTCAATGTACAAGAGTTTAAATACAAGATTTTCCCCCTTACCTACAACATTCTTAAATCGAGATGAATTAAACTCAAAATACAAAATTTCGGTTTGACTTCATACCCATTTTCGATTTTGTTTTTTATTTTAAAAAATTGTGCTTGTTTGCCCACCAATTTTTTACAACTTTTTCATATTCCTTTCATTACATGTTTTAATTCTAATTCTAAGCCAATATCAAAATTTTAAGACCCCTGTTTATAACCTCTTCGGGTTTTGCAATTTCTTTGCAATAATTTCCTTAATGTAGCATTTGAACTATTAACCTAATTTCAAAAACCACAAAAGCAAATTTGTTTTCAGTTTTTGGTTAACTTTTGCATTACAACAATTTTCTTCTTTTTTTTTTTTTTTTTCCTTAATCCAACGTTTGAATTCTTAACTAAATTCTAAAAACAAAAACAAACTATTTTTTTTAGGTTTTAAAGCGAAAACATTGTTAGAGTGGTAGATAACAAAATAAAGAAACTTATAAGTACAATTAGGGTCTCTAATTAGTTTAACAAACTAAGCAAGAAGACATGTGACCTAATTATGATCACCTAGAATTGATTTCCAAAAACTAATAAAATGATTATGAAACAGAAGTGATTGATATTCTTAACCTTTCAGTTCAATCAGTGATGGAGACGACGACGACAAAGAAAGTGGCGGTGGAAGGTGAACAAAGTATGGTTGGAGGAGTGGATCAAAAGAAGAAGAGATTGAGTCAGGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTATCAAAGGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATAATATCTCTAAGGAAAAACATAACCTTCAACAAGAGGTTTCTATTTCTAATCTTTCATCTTTAGTACCCTACCTTTCACTTTCAATATTATTCTATACAAATTTTAGATCACCCATCACACAATACTTCCACATTTTTATTGTTAAGGTTATCACGAGTGTAGATATAATTTAATTAAGTCATGTTTGGGAGTGATTCTAAAATGGTTATAATCAACTTTGTCATTTTTAAAATCATTATGAAATATGTTTTTAATGATTCAAAACCAATTTTGGCAAAATGAAAATTAAAGTTAAAAGTGTAAAATTAAATGTTAAACTAATATTTAAAGATTAAAAGTGTGTTTTGAAGTGATTTTGAGTGTGACAAAAGTGATTTGATTTTAACCATTTTCAAAACCACTCTTAAATATGTTGTTAATGACGATCTTAAGAAGATTGTAGAGATAATTTAAGGATATGCTTTAAAGGACTCAATCCATGAGTTATATTGAATTGAAATTAGCATTAATGAATCATTGTCACTAAAAGAGCTTAGTTAGGCTAAATTGGTAAAAGACAAGGTCAATCGCATCTTCTACATTCTTTGACATAAAATCATGCAAAACAACATCCCATGAAGCCTTGGAAGTATTGCTTATATATAAACAATGACCTAAAGAACTTCTTGAAATTTTCTAACATTTCATTGGAAGGATATTATATTATAACCCTATTATATCCATACAAATGTGGATGGACTAATTAATGCATTTAATTGAACTTGTGTAGGGATGCATGTTAATCTTAAAAGCTTGGCGATAAGTCCCACGTTAACTTAAGCTTTTGAATTGTCCGCTACAGGTGATAAAACTAAGAAGCATGCTAAGAGAACAAGCAACGAGGAATCAAGGGTCGATAGGTTGCACGGATGTCTCCGGGGAAGAGACGACGGTGGAATGCACATCGGTTGAGATTCTGAGCTGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTACTCACCTGCCTTCTTATCCTTAG

mRNA sequence

ATGGAGTGGAATAATGGCAAAACTTTCACTCCTAACTTTGTTTCTCCACCACCACATTCTTCTTCCTCTGCTTTGCTCTACAACTGCAACAACTACAACTGCAATTTCGATCACTTTCCTGAAGTGATTGATATTCTTAACCTTTCAGTTCAATCAGTGATGGAGACGACGACGACAAAGAAAGTGGCGGTGGAAGGTGAACAAAGTATGGTTGGAGGAGTGGATCAAAAGAAGAAGAGATTGAGTCAGGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTATCAAAGGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATAATATCTCTAAGGAAAAACATAACCTTCAACAAGAGGTGATAAAACTAAGAAGCATGCTAAGAGAACAAGCAACGAGGAATCAAGGGTCGATAGGTTGCACGGATGTCTCCGGGGAAGAGACGACGGTGGAATGCACATCGGTTGAGATTCTGAGCTGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTACTCACCTGCCTTCTTATCCTTAG

Coding sequence (CDS)

ATGGAGTGGAATAATGGCAAAACTTTCACTCCTAACTTTGTTTCTCCACCACCACATTCTTCTTCCTCTGCTTTGCTCTACAACTGCAACAACTACAACTGCAATTTCGATCACTTTCCTGAAGTGATTGATATTCTTAACCTTTCAGTTCAATCAGTGATGGAGACGACGACGACAAAGAAAGTGGCGGTGGAAGGTGAACAAAGTATGGTTGGAGGAGTGGATCAAAAGAAGAAGAGATTGAGTCAGGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTATCAAAGGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATAATATCTCTAAGGAAAAACATAACCTTCAACAAGAGGTGATAAAACTAAGAAGCATGCTAAGAGAACAAGCAACGAGGAATCAAGGGTCGATAGGTTGCACGGATGTCTCCGGGGAAGAGACGACGGTGGAATGCACATCGGTTGAGATTCTGAGCTGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTACTCACCTGCCTTCTTATCCTTAG

Protein sequence

MEWNNGKTFTPNFVSPPPHSSSSALLYNCNNYNCNFDHFPEVIDILNLSVQSVMETTTTKKVAVEGEQSMVGGVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQGSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP

Homology

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BLAST of Cla97C04G076510 vs. NCBI nr
Match: XP_004143373.2 (homeobox-leucine zipper protein ATHB-22 isoform X1 [Cucumis sativus] >KGN48225.1 hypothetical protein Csa_003985 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 3.5e-91
Identity = 192/238 (80.67%), Postives = 199/238 (83.61%), Query Frame = 0


Query: 1   MEWNNGK-TFTPNFVSPPPH-SSSSALLYNCN-NYNCNFDHFPEVIDILNLSVQSVMETT 60
           MEWNNG  +F+ NFVSPPP  SSSSALLYN + N N N DHFP V              T
Sbjct: 1   MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVV-------------ET 60

Query: 61  TTKKVAVEGEQSMVG-GVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
           TT     EGEQ+M G GVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP
Sbjct: 61  TTPVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQG 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLRSMLREQ TRNQG
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQG 180

Query: 181 SIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           S+  TDVSGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 181 SMAHTDVSGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 224

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BLAST of Cla97C04G076510 vs. NCBI nr
Match: XP_031742621.1 (homeobox-leucine zipper protein ATHB-22 isoform X2 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.8e-90
Identity = 191/238 (80.25%), Postives = 198/238 (83.19%), Query Frame = 0


Query: 1   MEWNNGK-TFTPNFVSPPPH-SSSSALLYNCN-NYNCNFDHFPEVIDILNLSVQSVMETT 60
           MEWNNG  +F+ NFVSPPP  SSSSALLYN + N N N DHFP                T
Sbjct: 1   MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFP--------------VET 60

Query: 61  TTKKVAVEGEQSMVG-GVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
           TT     EGEQ+M G GVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP
Sbjct: 61  TTPVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQG 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLRSMLREQ TRNQG
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQG 180

Query: 181 SIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           S+  TDVSGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 181 SMAHTDVSGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 223

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BLAST of Cla97C04G076510 vs. NCBI nr
Match: XP_038883822.1 (homeobox-leucine zipper protein ATHB-22-like [Benincasa hispida])

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-89
Identity = 190/240 (79.17%), Postives = 199/240 (82.92%), Query Frame = 0


Query: 1   MEWNNGKTFTPNFVSP--PPHSS--SSALLYNCN-NYNCNFDHFPEVIDILNLSVQSVME 60
           MEWNNGK+F+PNFVSP  P  SS  SSALLYN N N N N D FPE+             
Sbjct: 1   MEWNNGKSFSPNFVSPLLPQSSSSPSSALLYNYNCNINYNLDQFPEM------------- 60

Query: 61  TTTTKKVAVEGEQSMVGGVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
             T KK  VE EQSMVGGVDQKKKRL+QDQLEALERSFQEEVKLDPDRKMKLSKELGLQP
Sbjct: 61  --TRKKAGVEWEQSMVGGVDQKKKRLNQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQA-TRNQ 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD IS EKHNLQQEV+KLRSML+EQA TRNQ
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISMEKHNLQQEVMKLRSMLKEQATTRNQ 180

Query: 181 GSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEAT-HLPSYP 234
           GS+  TDVSGEET VECTSVE+LSCNNYIY +VEDFNQISASA PFWWGAEA  HLPSYP
Sbjct: 181 GSMAYTDVSGEETMVECTSVEVLSCNNYIY-HVEDFNQISASALPFWWGAEAADHLPSYP 224

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BLAST of Cla97C04G076510 vs. NCBI nr
Match: XP_008462523.1 (PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 3.7e-88
Identity = 184/238 (77.31%), Postives = 196/238 (82.35%), Query Frame = 0


Query: 1   MEWNNGK-TFTPNFVSP-PPHSSSSALLYNCNNYNC--NFDHFPEVIDILNLSVQSVMET 60
           MEWNNG  +F+ NFVS  P  SSSSALLYN  N+NC  N DHFP +              
Sbjct: 1   MEWNNGNISFSSNFVSQLPQSSSSSALLYN-YNFNCSYNLDHFPVI-------------E 60

Query: 61  TTTKKVAVEGEQSMVGGVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
           T T+    EG+Q+M GGVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLS ELGLQP
Sbjct: 61  TATRVATGEGKQNMAGGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQG 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLR+MLREQ TRN G
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLREQTTRNAG 180

Query: 181 SIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           S+  TD+SGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 181 SMAHTDISGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 223

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BLAST of Cla97C04G076510 vs. NCBI nr
Match: XP_031742623.1 (putative homeobox-leucine zipper protein ATHB-51 isoform X4 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 9.1e-79
Identity = 161/179 (89.94%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 57  TTTKKVAVEGEQSMVG-GVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQ 116
           TTT     EGEQ+M G GVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQ
Sbjct: 8   TTTPVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQ 67

Query: 117 PRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQ 176
           PRQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLRSMLREQ TRNQ
Sbjct: 68  PRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQ 127

Query: 177 GSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           GS+  TDVSGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 128 GSMAHTDVSGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 185

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BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot
Match: Q9LZR0 (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702 GN=ATHB-51 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 8.3e-35
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 77  KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEH 136
           KKKRL+  QL +LERSFQEE+KLD DRK+KLS+ELGLQPRQIAVWFQNRRARWK KQLE 
Sbjct: 77  KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQ 136

Query: 137 LYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQA-TRNQGSIGCTDVSGEETTVECTSVE 196
           LYD+L+Q++D +S+EK  L  EV KLR++LR+Q   + Q S G   VSGEE TVE +SV 
Sbjct: 137 LYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQISAGTIKVSGEEDTVEISSVV 196

Query: 197 IL--SCNNYIYNNVEDFNQI 214
           +      N   N +   NQ+
Sbjct: 197 VAHPRTENMNANQITGGNQV 216

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BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot
Match: Q4PSR7 (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana OX=3702 GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 79/172 (45.93%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 9   FTPNFVSPPPHSSSSALLYNCNNYNCNFDHFPEVIDILNLSVQSVMETTTTKKVAVEGEQ 68
           ++ +F+     SS  +  YN ++++ N D+    +  +  + Q ++        +  GE+
Sbjct: 4   WSSSFIDGASSSSFISPFYNFDHFSGNQDN--RCLGTMMGAQQDILHVPLAMVESGYGEE 63

Query: 69  S-MVGGVDQKKKRLSQDQLEALERSFQEEV--------KLDPDRKMKLSKELGLQPRQIA 128
           S    G ++KKK+++ +QL+ LERSFQEE+        KL+PDRKMKLSKELGLQPRQIA
Sbjct: 64  SNSFNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIA 123

Query: 129 VWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQAT 172
           VWFQNR+ARWK KQLEHLY++L+Q+FD +S+EK  LQ+E+I+L+SM+RE ++
Sbjct: 124 VWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIREDSS 173

[Close]

BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot
Match: A2X980 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-23
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 76  QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLE 135
           +KK+RL+ +Q+  LERSF+EE KL+P+RK +L+++LGLQPRQ+AVWFQNRRARWKTKQLE
Sbjct: 78  EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLE 137

Query: 136 HLYDTLKQQFDNIS-------KEKHNLQQEVIKLRSMLREQATRNQGSIG-CTDVSG 185
             +D LK  FD +        ++ H L  +V+ L   L+E+ T  +GS G   DV G
Sbjct: 138 RDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPG 194

[Close]

BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot
Match: Q6YWR4 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-23
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 76  QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLE 135
           +KK+RL+ +Q+  LERSF+EE KL+P+RK +L+++LGLQPRQ+AVWFQNRRARWKTKQLE
Sbjct: 76  EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLE 135

Query: 136 HLYDTLKQQFDNIS-------KEKHNLQQEVIKLRSMLREQATRNQGSIG-CTDVSG 185
             +D LK  FD +        ++ H L  +V+ L   L+E+ T  +GS G   DV G
Sbjct: 136 RDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPG 192

[Close]

BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot
Match: P46668 (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-23
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 51  QSVMETTTTKKVAVEGEQSMVGGVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKE 110
           QS++E    ++ A+  E+  V G+ +KK+RLS +Q++ALE++F+ E KL+P+RK+KL++E
Sbjct: 37  QSMLEGYEEEEEAIVEERGHV-GLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQE 96

Query: 111 LGLQPRQIAVWFQNRRARWKTKQLEH-------LYDTLKQQFDNISKEKHNLQQEVIKLR 170
           LGLQPRQ+AVWFQNRRARWKTKQLE         YD+L+  FD++ ++  +L QE+ KL+
Sbjct: 97  LGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLK 156

Query: 171 SML------REQATRNQGSIGCTDVSGEETTV 190
           + L       E+   N      +D+S +E  V
Sbjct: 157 TKLNGGGGEEEEEENNAAVTTESDISVKEEEV 187

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BLAST of Cla97C04G076510 vs. ExPASy TrEMBL
Match: A0A0A0KET9 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449320 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 192/238 (80.67%), Postives = 199/238 (83.61%), Query Frame = 0


Query: 1   MEWNNGK-TFTPNFVSPPPH-SSSSALLYNCN-NYNCNFDHFPEVIDILNLSVQSVMETT 60
           MEWNNG  +F+ NFVSPPP  SSSSALLYN + N N N DHFP V              T
Sbjct: 1   MEWNNGNISFSSNFVSPPPQSSSSSALLYNYSFNCNYNLDHFPVV-------------ET 60

Query: 61  TTKKVAVEGEQSMVG-GVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
           TT     EGEQ+M G GVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP
Sbjct: 61  TTPVATGEGEQNMAGAGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQG 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLRSMLREQ TRNQG
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRSMLREQTTRNQG 180

Query: 181 SIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           S+  TDVSGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 181 SMAHTDVSGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 224

[Close]

BLAST of Cla97C04G076510 vs. ExPASy TrEMBL
Match: A0A1S3CIQ6 (homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo OX=3656 GN=LOC103500861 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.8e-88
Identity = 184/238 (77.31%), Postives = 196/238 (82.35%), Query Frame = 0


Query: 1   MEWNNGK-TFTPNFVSP-PPHSSSSALLYNCNNYNC--NFDHFPEVIDILNLSVQSVMET 60
           MEWNNG  +F+ NFVS  P  SSSSALLYN  N+NC  N DHFP +              
Sbjct: 1   MEWNNGNISFSSNFVSQLPQSSSSSALLYN-YNFNCSYNLDHFPVI-------------E 60

Query: 61  TTTKKVAVEGEQSMVGGVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQP 120
           T T+    EG+Q+M GGVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLS ELGLQP
Sbjct: 61  TATRVATGEGKQNMAGGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQP 120

Query: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQG 180
           RQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLR+MLREQ TRN G
Sbjct: 121 RQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLREQTTRNAG 180

Query: 181 SIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
           S+  TD+SGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA HLPSYP
Sbjct: 181 SMAHTDISGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAAHLPSYP 223

[Close]

BLAST of Cla97C04G076510 vs. ExPASy TrEMBL
Match: A0A5A7SJ21 (Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001530 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.7e-79
Identity = 160/186 (86.02%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 49  SVQSVMETTTTKKVAVEGEQSMVGGVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKL 108
           SVQ V+E T T+    EG+Q+M GGVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKL
Sbjct: 15  SVQLVIE-TATRVATGEGKQNMAGGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKL 74

Query: 109 SKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLR 168
           S ELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLR+MLR
Sbjct: 75  SMELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLR 134

Query: 169 EQATRNQGSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEAT 228
           EQ TRN GS+  TD+SGEETTVECTSVEILSCNNY+Y NVEDFNQISASAPPFWWGAEA 
Sbjct: 135 EQTTRNAGSMAHTDISGEETTVECTSVEILSCNNYMY-NVEDFNQISASAPPFWWGAEAA 194

Query: 229 HLPSYP 234
           HLPSYP
Sbjct: 195 HLPSYP 198

[Close]

BLAST of Cla97C04G076510 vs. ExPASy TrEMBL
Match: A0A5D3CAN1 (Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00890 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.2e-78
Identity = 159/186 (85.48%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 49  SVQSVMETTTTKKVAVEGEQSMVGGVD-QKKKRLSQDQLEALERSFQEEVKLDPDRKMKL 108
           SVQ V+E T T+    EG+Q+M GGVD QKKKRLSQDQLEALERSFQEEVKLDPDRKMKL
Sbjct: 15  SVQLVIE-TATRVATGEGKQNMAGGVDHQKKKRLSQDQLEALERSFQEEVKLDPDRKMKL 74

Query: 109 SKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLR 168
           S ELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFD ISKEKHNLQQEV+KLR+MLR
Sbjct: 75  SMELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLR 134

Query: 169 EQATRNQGSIGCTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEAT 228
           EQ TRN GS+  TD+SGEETTVECTSVEILSCNNY+Y NVEDF+QISASAPPFWWGAEA 
Sbjct: 135 EQTTRNAGSMAHTDISGEETTVECTSVEILSCNNYMY-NVEDFDQISASAPPFWWGAEAA 194

Query: 229 HLPSYP 234
           HLPSYP
Sbjct: 195 HLPSYP 198

[Close]

BLAST of Cla97C04G076510 vs. ExPASy TrEMBL
Match: A0A6J1IJF1 (putative homeobox-leucine zipper protein ATHB-51 OS=Cucurbita maxima OX=3661 GN=LOC111477634 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.3e-62
Identity = 148/237 (62.45%), Postives = 166/237 (70.04%), Query Frame = 0


Query: 1   MEWNNGKTFTPNFVSPPPHSSSSALLYN-CNNYNCNFDHFPEVIDILNLSVQSVMETTTT 60
           MEWNNG       + P P++S     YN   NYN N D FP            V+E    
Sbjct: 1   MEWNNGS------LIPSPYTS-----YNYYYNYNYNLDEFP------------VLE---A 60

Query: 61  KKVAVEGEQSMVGGVDQKKK--RLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQ 120
           KK  VE   S+VGGVD+KKK  RLSQDQLE+LER FQE+  LDPD KMKLSKELGLQPRQ
Sbjct: 61  KKPEVE---SVVGGVDEKKKKNRLSQDQLESLERCFQEDGMLDPDTKMKLSKELGLQPRQ 120

Query: 121 IAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQGSI 180
           IAVWFQNRRARW+TKQLE+LY TLKQ+FD ISKEKH LQQEV+KLRSML EQ   N+  +
Sbjct: 121 IAVWFQNRRARWRTKQLEYLYHTLKQEFDTISKEKHTLQQEVLKLRSMLGEQTMSNEEPM 180

Query: 181 GCTDVSGEETTVECTSVEIL-SCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 234
              D SG E TVE TSV ++ SCNNY +NNVED  +IS S PPFWWGAEA HLPSYP
Sbjct: 181 AYEDASG-EATVESTSVGVIGSCNNYTHNNVEDLVKISGSGPPFWWGAEAAHLPSYP 207

[Close]

BLAST of Cla97C04G076510 vs. TAIR 10
Match: AT5G03790.1 (homeobox 51 )

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-36
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 77  KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEH 136
           KKKRL+  QL +LERSFQEE+KLD DRK+KLS+ELGLQPRQIAVWFQNRRARWK KQLE 
Sbjct: 77  KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQ 136

Query: 137 LYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQA-TRNQGSIGCTDVSGEETTVECTSVE 196
           LYD+L+Q++D +S+EK  L  EV KLR++LR+Q   + Q S G   VSGEE TVE +SV 
Sbjct: 137 LYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQISAGTIKVSGEEDTVEISSVV 196

Query: 197 IL--SCNNYIYNNVEDFNQI 214
           +      N   N +   NQ+
Sbjct: 197 VAHPRTENMNANQITGGNQV 216

[Close]

BLAST of Cla97C04G076510 vs. TAIR 10
Match: AT2G36610.1 (homeobox protein 22 )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 79/172 (45.93%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 9   FTPNFVSPPPHSSSSALLYNCNNYNCNFDHFPEVIDILNLSVQSVMETTTTKKVAVEGEQ 68
           ++ +F+     SS  +  YN ++++ N D+    +  +  + Q ++        +  GE+
Sbjct: 4   WSSSFIDGASSSSFISPFYNFDHFSGNQDN--RCLGTMMGAQQDILHVPLAMVESGYGEE 63

Query: 69  S-MVGGVDQKKKRLSQDQLEALERSFQEEV--------KLDPDRKMKLSKELGLQPRQIA 128
           S    G ++KKK+++ +QL+ LERSFQEE+        KL+PDRKMKLSKELGLQPRQIA
Sbjct: 64  SNSFNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIA 123

Query: 129 VWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQAT 172
           VWFQNR+ARWK KQLEHLY++L+Q+FD +S+EK  LQ+E+I+L+SM+RE ++
Sbjct: 124 VWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIREDSS 173

[Close]

BLAST of Cla97C04G076510 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 )

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-24
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 51  QSVMETTTTKKVAVEGEQSMVGGVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKE 110
           QS++E    ++ A+  E+  V G+ +KK+RLS +Q++ALE++F+ E KL+P+RK+KL++E
Sbjct: 37  QSMLEGYEEEEEAIVEERGHV-GLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQE 96

Query: 111 LGLQPRQIAVWFQNRRARWKTKQLEH-------LYDTLKQQFDNISKEKHNLQQEVIKLR 170
           LGLQPRQ+AVWFQNRRARWKTKQLE         YD+L+  FD++ ++  +L QE+ KL+
Sbjct: 97  LGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLK 156

Query: 171 SML------REQATRNQGSIGCTDVSGEETTV 190
           + L       E+   N      +D+S +E  V
Sbjct: 157 TKLNGGGGEEEEEENNAAVTTESDISVKEEEV 187

[Close]

BLAST of Cla97C04G076510 vs. TAIR 10
Match: AT4G40060.1 (homeobox protein 16 )

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-24
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 73  GVDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTK 132
           G+ +KK+RL  DQ++ALE++F+ E KL+P+RK KL++ELGLQPRQ+AVWFQNRRARWKTK
Sbjct: 55  GLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTK 114

Query: 133 QLEH-------LYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQGSIGCTDVSGE 187
           QLE         YD+L+  FD++ ++  +L QE+ K+++ +  +   N        V  E
Sbjct: 115 QLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEE 174

[Close]

BLAST of Cla97C04G076510 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 )

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-22
Identity = 63/164 (38.41%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 65  EGEQSMVGGVD-------QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQ 124
           +G    +GGV        +KK+RL  +Q++ALE++F+ + KL+P+RK+KL++ELGLQPRQ
Sbjct: 53  DGSLEDLGGVGHASSTAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQ 112

Query: 125 IAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLREQATRNQGSI 184
           +A+WFQNRRARWKTKQLE  Y  LK  FD + + + +LQ++   L   ++E   +     
Sbjct: 113 VAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAK----- 172

Query: 185 GCTDVSGEETTVECTSVEILSCNNYIY--NNVEDFNQISASAPP 220
              +V G +   E  +++ +  N  +   N V + +  S S PP
Sbjct: 173 --LNVEGVKGIEENGALKAVEANQSVMANNEVLELSHRSPSPPP 209

The following BLAST results are available for this feature:

BLAST of Cla97C04G076510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143373.2	3.5e-91	80.67	homeobox-leucine zipper protein ATHB-22 isoform X1 [Cucumis sativus] >KGN48225.1...	[more]
XP_031742621.1	1.8e-90	80.25	homeobox-leucine zipper protein ATHB-22 isoform X2 [Cucumis sativus]	[more]
XP_038883822.1	1.9e-89	79.17	homeobox-leucine zipper protein ATHB-22-like [Benincasa hispida]	[more]
XP_008462523.1	3.7e-88	77.31	PREDICTED: homeobox-leucine zipper protein ATHB-22-like [Cucumis melo]	[more]
XP_031742623.1	9.1e-79	89.94	putative homeobox-leucine zipper protein ATHB-51 isoform X4 [Cucumis sativus]	[more]

BLAST of Cla97C04G076510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZR0	8.3e-35	60.00	Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702...	[more]
Q4PSR7	1.9e-31	45.93	Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
A2X980	1.9e-23	51.28	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6YWR4	1.9e-23	51.28	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
P46668	2.5e-23	44.08	Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6...	[more]

BLAST of Cla97C04G076510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KET9	1.7e-91	80.67	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449320 PE...	[more]
A0A1S3CIQ6	1.8e-88	77.31	homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5A7SJ21	5.7e-79	86.02	Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5D3CAN1	2.2e-78	85.48	Homeobox-leucine zipper protein ATHB-22-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1IJF1	8.3e-62	62.45	putative homeobox-leucine zipper protein ATHB-51 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Cla97C04G076510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03790.1	5.9e-36	60.00	homeobox 51	[more]
AT2G36610.1	1.4e-32	45.93	homeobox protein 22	[more]
AT2G22430.1	1.8e-24	44.08	homeobox protein 6	[more]
AT4G40060.1	8.9e-24	47.11	homeobox protein 16	[more]
AT5G65310.1	1.7e-22	38.41	homeobox protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..165
None	No IPR available	GENE3D	1.10.10.60		coord: 72..137 e-value: 1.3E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR24326	HOMEOBOX-LEUCINE ZIPPER PROTEIN	coord: 1..202
None	No IPR available	PANTHER	PTHR24326:SF556	HOMEOBOX LEUCINE ZIPPER PROTEIN	coord: 1..202
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 112..128 score: 55.68 coord: 103..112 score: 37.96
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 75..136 e-value: 8.8E-19 score: 78.4
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 77..130 e-value: 1.7E-17 score: 63.0
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 72..132 score: 17.086466
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 76..133 e-value: 1.0054E-17 score: 72.6612
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 132..166 e-value: 9.5E-9 score: 35.3
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 107..130
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 68..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G076510.2	Cla97C04G076510.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding