Cla97C04G071450 (gene) Watermelon (97103) v2.5

Overview
NameCla97C04G071450
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionexosome complex component RRP4 homolog
LocationCla97Chr04: 17942020 .. 17945061 (+)
RNA-Seq ExpressionCla97C04G071450
SyntenyCla97C04G071450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTTCAAAGAGCCCGAGAAAAACTCGAATCTCTCTCATCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTTACTATTTTTATATAATAGCTGCTTGGATTCTGTAATTGCCAGGGCATTATATGCATTGAAATATAATTGAAATTTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGCGCCTTACGTGCCAGGTTGTCCATGAAACTTTGTTATTCGGTCTTTCTCGATGATAGTTTAAAGTTTCCCTTTCTTTGGTCTATTGCTATGATATCTTTTATGATTGATATACTTGTCTGTACTGATTATTAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTAGAACCAGATGCTTTTTATTAATTTTTTGGTTTTACATAAATTTAATATAGAGACGTTGGTGAGTAGAACAGACAAGAAAAATTTATTCTGGAGTCATGGTCATGATGTTGTAAATAGGAAAAATGTGTTACTATGACTCCCCCATGCCATTTTTTTTTATATCATTTGATGCGATCTTTTTCAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTGGAGTCTTCCCTTTTGTTATGGAAATAATGGTGCATCCTCTTGCATCAGATGGTGAACTAGCTAGGCCTTCTGCTGAATTTAATAGAAATTTTACTGCAAAATCGCTGCAACTGATCCACTCTCTCTCTCTCTCTCTCTCAAGAGTGGTTGCATTTGTTGTAACGCTGGATTAATTGTATTGTTTTTATTTCTAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGTAAGTTTTATAGCTTTTACTTTCACCTATCAACGTCAGGAAGAATATCTGCTACCAAGTTTCTCACGCGTCATACATATAAAGTTTTCTCATATATTTTTACAATTTTGAAGAATTAAAAATAATTGAGGCGTGTCCAAGCTAGCCTGGACACTAGTGTGTGTATATATATATTGTTACATAGGACGTTATTGTGAGTACCATGGAGTTGGAACCAAAATTTTAAGTTCTTCCTTGACCATTAGGCCAAAGCATGATAGTTATGAACTTTTGTCACTCAACTCACAAACCCTTTGTAAAATGTATAGTGCATAGGCTCTGACATGTTAAATAGATAGTTTCATCTTTGGCCCCTCGCCGGGTTCTGGCCAGGTGTCTCAGCTTGAGTGCCTTTTTCTTTTGTGCCTTGTTGCTCTTCACCAAGGTTTCTAAATTTTCTTGACATTCTAATGTTGCTGTAGCCTGTAGGTGTCTTAACTCAAGTGTCTATTTGTGCCTTTTGCCCTTTAGTGCCATTTCAAAAGTCTTTTCTTTTACTTTTCTCTCCTTTTACTAAATGCAAGTAATGCAATATATATCCATTATTGCTTCTTACTCTCACCTGTCAGATTCAAATTAAGTCTTATGCCTTGCACAAAGGCCTGTAGAGATGTACCTTGGCACTTGAGTTTACCGTGCACTACAATAAATAAACACCACTCTCATCAGATAGTTCATGCATAATTTTCCATTGGAGAAAAAATAACATCACTACATCTTATCTCAGGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAAAAGAAGTCTCTTTCTTAAGCTTCTGGATGTCGATGTAAACAAAATAAACTTTAGAATCAAAATTTTCTACGTCTCCCACATCTTCATTGGTTTCTTAGGATTCCATAGAAAAATTCTTGATAGCATGTGAATACTGATTTATAGACGAATCTTCTGGGGAAACTCTAATGGTTAAAACGAATTGTGATTATAAAGTTGTTAGGGCTCTGTTTGGTAACAACTAACTATTTGGTTTTTTGTTTTTCGTGTTTGAAAAGTAAGCTATTTCAATTCAATTTCTTACAATAGTTTTCATCTTAAGTAAAAGAGTTGAATTCTAAGCTAAATTTCAAAAACAAAAATATGTTTTTAAAAACTATTTTTTTTTAGTTTTCAAAACATGGGCATAGTTTTTGAAAACATTGTAGGAAGTAGATAATAAAGCAAGAAATTTATAGATGAAATTGGTGTTTATAGGCTTAATTTTCAAAAACTAAAAATAAAAAACGAAATGGTTATCAAACGGAACCTACATTTGCTTTTTTTTGCTCAGTATGATAAGTTCAAAATTCATAAGGGTACGTATATTTGAATATGATATCTTTGATGCAATGGTTAATAGATTCCTAACAACTTTTCTGGCATCATCTCATCTTGTTACTTCATGACTGTTGTGAATAATAAGATTTGTGCATTTGTATATCCAGCTTGAACGTGGTCAGATGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCATTAACAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTCGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGTGTTCTCACGGCGGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAGAGGGGGTGA

mRNA sequence

ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTTCAAAGAGCCCGAGAAAAACTCGAATCTCTCTCATCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGCGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGATGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCATTAACAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTCGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGTGTTCTCACGGCGGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAGAGGGGGTGA

Coding sequence (CDS)

ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTTCAAAGAGCCCGAGAAAAACTCGAATCTCTCTCATCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGCGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGATGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCATTAACAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTCGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGTGTTCTCACGGCGGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAGAGGGGGTGA

Protein sequence

MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDVHEMLGSEFCVLTAEKEVERRSLSKKRG
Homology
[Close]
BLAST of Cla97C04G071450 vs. NCBI nr
Match: XP_038882865.1 (exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882866.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882867.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882868.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 609.4 bits (1570), Expect = 1.8e-170
Identity = 309/327 (94.50%), Postives = 319/327 (97.55%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQRA+E+LESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTV  YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG 
Sbjct: 181 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTF NQVQ+RVYTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Sbjct: 241 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKEVERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. NCBI nr
Match: XP_038882864.1 (exosome complex component RRP4 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 609.4 bits (1570), Expect = 1.8e-170
Identity = 309/327 (94.50%), Postives = 319/327 (97.55%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQRA+E+LESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 38  MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 97

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 98  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 157

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 158 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 217

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTV  YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG 
Sbjct: 218 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 277

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTF NQVQ+RVYTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Sbjct: 278 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 337

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKEVERR+ SKKRG
Sbjct: 338 HEMLGSEFCVLTAEKEVERRTSSKKRG 364

[Close]
BLAST of Cla97C04G071450 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 601.3 bits (1549), Expect = 5.0e-168
Identity = 301/327 (92.05%), Postives = 316/327 (96.64%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 599.4 bits (1544), Expect = 1.9e-167
Identity = 300/327 (91.74%), Postives = 314/327 (96.02%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSL IS+NIDV
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 598.2 bits (1541), Expect = 4.3e-167
Identity = 300/327 (91.74%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 8.5e-118
Identity = 215/327 (65.75%), Postives = 266/327 (81.35%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R +RA E+L+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKG 240
           Q+L V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKD-EEMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID 300
           S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSLSKKR 327
           +H+MLGSEF V+ AE E ERR   +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-46
Identity = 106/214 (49.53%), Postives = 141/214 (65.89%), Query Frame = 0 

Query: 13  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIW+    + KED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-46
Identity = 107/213 (50.23%), Postives = 141/213 (66.20%), Query Frame = 0 

Query: 13  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 8.7e-46
Identity = 106/214 (49.53%), Postives = 140/214 (65.42%), Query Frame = 0 

Query: 13  KIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  AR+ L     +      V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQMLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIWI    + KE+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 214

[Close]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.3e-45
Identity = 107/257 (41.63%), Postives = 155/257 (60.31%), Query Frame = 0 

Query: 51  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIE 230
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H + +      
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQ-----H 250

Query: 231 DQVNISEQKGSKFEGTFGNQVQE-RVYTPLT-TRQNICRTANAIRVL-----SILGFIIT 290
             V+I+  +    E  + N+  E   YT L  +R +IC    A R L     SI  F  +
Sbjct: 251 SSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

Query: 291 VEVVMEIVSLSISMNID 300
             V   +  L++  N+D
Sbjct: 311 SLVFSNLQDLTVPKNMD 321

[Close]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 2.1e-167
Identity = 300/327 (91.74%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 4.6e-167
Identity = 299/325 (92.00%), Postives = 314/325 (96.62%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER+YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKK 326
           HEMLGSEFCVLTAEKE ERR+ SKK
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.3e-166
Identity = 303/327 (92.66%), Postives = 313/327 (95.72%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQISLN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP EDMMIEDQVN SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTFGNQVQERVYTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 3.4e-162
Identity = 296/327 (90.52%), Postives = 311/327 (95.11%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQISLN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFI IGE VDP EDMMIEDQVN SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTFGNQVQERVYTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS+S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match: A0A1S3B5H2 (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 4.9e-161
Identity = 296/327 (90.52%), Postives = 311/327 (95.11%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLNHTQKIRL+RA+E+L+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 MLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +L VSPYL+KRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPKED MIED V+  EQK  
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGT    VQE VYTPL TRQNICRTANAIRVLS LGFI+TVEV+MEIV+LSIS+NIDV
Sbjct: 255 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSLSKKRG 328
           HEMLGSEFCVLTAEKEVERRS SKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of Cla97C04G071450 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 424.9 bits (1091), Expect = 6.0e-119
Identity = 215/327 (65.75%), Postives = 266/327 (81.35%), Query Frame = 0 

Query: 1   MRGLQISLNHTQKIRLQRAREKLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R +RA E+L+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QMLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKG 240
           Q+L V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKD-EEMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLTTRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID 300
           S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSLSKKR 327
           +H+MLGSEF V+ AE E ERR   +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:
BLAST of Cla97C04G071450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882865.11.8e-17094.50exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882... [more]
XP_038882864.11.8e-17094.50exosome complex component RRP4 homolog isoform X1 [Benincasa hispida][more]
KAG6606437.15.0e-16892.05Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub... [more]
XP_023533481.11.9e-16791.74exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
XP_022995373.14.3e-16791.74exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom... [more]
BLAST of Cla97C04G071450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVT78.5e-11865.75Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
Q2KID01.0e-4649.53Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
Q8VBV31.7e-4650.23Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
Q138688.7e-4649.53Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
Q097047.3e-4541.63Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of Cla97C04G071450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7S02.1e-16791.74exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909... [more]
A0A6J1EXY14.6e-16792.00exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1HGD91.3e-16692.66exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HVC73.4e-16290.52exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
A0A1S3B5H24.9e-16190.52exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of Cla97C04G071450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03360.16.0e-11965.75ribosomal RNA processing 4 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableGENE3D2.40.50.100coord: 36..87
e-value: 3.1E-17
score: 63.9
NoneNo IPR availableGENE3D2.40.50.140coord: 88..177
e-value: 5.2E-19
score: 70.0
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 11..320
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 86..176
e-value: 2.25574E-33
score: 116.495
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 44..82
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 90..169
e-value: 1.2E-4
score: 31.5
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 179..219
e-value: 2.1E-12
score: 47.3
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 11..320
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 85..176
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 179..321

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G071450.1Cla97C04G071450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding