Cla97C04G071170 (gene) Watermelon (97103) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTAGTTTAAGGTCTGGTCGCATCAATCAGCTCGCTTGGGATCATGTCTTCTTAGGGCTCCCCTGAAACGCTGGAAGAAGAAATTCACTGTCGAACCCTTAAAGCAACAAGCGAGAATGGACAAGAAAAAGAACCTTTCCACTTTCCTACTAACGCTTTTCTCTTTAATCAAAATCCATCCGTGTAGCCTTTGCTTTCTGTTGTTCTTATCAGTACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTATACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTATACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA MKINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIRGRPRKILYSEQEIISDFQNLTRVRVNEFFKAYRHKILNKKGAKPLDRVKEGKDRRQKASNAFQPANPRS Homology
BLAST of Cla97C04G071170 vs. NCBI nr
Match: KUM47405.1 (cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse transcriptase [Picea sitchensis]) HSP 1 Score: 88.2 bits (217), Expect = 5.7e-14 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0
BLAST of Cla97C04G071170 vs. NCBI nr
Match: QWQ49911.1 (hypothetical protein [Zelkova schneideriana]) HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05 Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of Cla97C04G071170 vs. NCBI nr
Match: DAD25595.1 (TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_asm: hypothetical protein HUJ06_027110 [Nelumbo nucifera] >DAD25659.1 TPA_asm: hypothetical protein HUJ06_027123 [Nelumbo nucifera] >DAD49315.1 TPA_asm: hypothetical protein HUJ06_032036 [Nelumbo nucifera] >DAD49591.1 TPA_asm: hypothetical protein HUJ06_000103 [Nelumbo nucifera]) HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04 Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of Cla97C04G071170 vs. NCBI nr
Match: KAB8468469.1 (hypothetical protein FH972_025303 [Carpinus fangiana]) HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0
BLAST of Cla97C04G071170 vs. ExPASy TrEMBL
Match: A0A117NGV6 (Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0
BLAST of Cla97C04G071170 vs. ExPASy TrEMBL
Match: A0A5N6L0M6 (Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025303 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|