Cla97C04G071170 (gene) Watermelon (97103) v2.5

Overview
NameCla97C04G071170
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionCob intron3 ORF
LocationCla97Chr04: 16971334 .. 16971935 (+)
RNA-Seq ExpressionCla97C04G071170
SyntenyCla97C04G071170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTAGTTTAAGGTCTGGTCGCATCAATCAGCTCGCTTGGGATCATGTCTTCTTAGGGCTCCCCTGAAACGCTGGAAGAAGAAATTCACTGTCGAACCCTTAAAGCAACAAGCGAGAATGGACAAGAAAAAGAACCTTTCCACTTTCCTACTAACGCTTTTCTCTTTAATCAAAATCCATCCGTGTAGCCTTTGCTTTCTGTTGTTCTTATCAGTACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA

mRNA sequence

ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTATACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA

Coding sequence (CDS)

ATGAAAATCAATTCCTTTATGCAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAAAAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTATACAGTGAACAAGAAATCATCAGCGATTTTCAGAACCTTACCCGGGTTAGAGTAAACGAGTTTTTTAAAGCCTATAGACATAAGATTCTCAACAAGAAAGGAGCGAAGCCGCTTGACCGAGTGAAAGAAGGGAAAGACAGACGGCAGAAAGCAAGCAATGCCTTCCAACCAGCTAACCCGCGGAGTTGA

Protein sequence

MKINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIRGRPRKILYSEQEIISDFQNLTRVRVNEFFKAYRHKILNKKGAKPLDRVKEGKDRRQKASNAFQPANPRS
Homology
BLAST of Cla97C04G071170 vs. NCBI nr
Match: KUM47405.1 (cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse transcriptase [Picea sitchensis])

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-14
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 2   KINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIR 61
           KI+ FM+ EE +GYVRYADDMIFAIK+G +SE VY R K+  +K L +LK AETSIELIR
Sbjct: 91  KIHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIELIR 150

Query: 62  GRPRK 67
           G PRK
Sbjct: 151 GIPRK 155

BLAST of Cla97C04G071170 vs. NCBI nr
Match: QWQ49911.1 (hypothetical protein [Zelkova schneideriana])

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 1  MKINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELI 60
          +K+  FM  E  + YVRYADD+ F IK G NSE V    KQ   + L  LK   TS+EL+
Sbjct: 10 VKMQDFMSKEARIKYVRYADDIAFDIKEGANSEMVSQGFKQFFNEALTELKLEATSLELV 69

Query: 61 RG 63
          RG
Sbjct: 70 RG 71

BLAST of Cla97C04G071170 vs. NCBI nr
Match: DAD25595.1 (TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_asm: hypothetical protein HUJ06_027110 [Nelumbo nucifera] >DAD25659.1 TPA_asm: hypothetical protein HUJ06_027123 [Nelumbo nucifera] >DAD49315.1 TPA_asm: hypothetical protein HUJ06_032036 [Nelumbo nucifera] >DAD49591.1 TPA_asm: hypothetical protein HUJ06_000103 [Nelumbo nucifera])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   MKINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELI 60
           + I S ++ E+ + YVRYADDM+F I +G +SE+V  R ++L ++ L+ +K   TS ELI
Sbjct: 89  LMIRSILEQEDKLRYVRYADDMLFGILQGVDSESVSQRFQKLFREALDTIKLEATSHELI 148

Query: 61  RG 63
           RG
Sbjct: 149 RG 150

BLAST of Cla97C04G071170 vs. NCBI nr
Match: KAB8468469.1 (hypothetical protein FH972_025303 [Carpinus fangiana])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 2   KINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIR 61
           +++  M+ E  + Y RYADDMIF   +G +SEA Y R +   ++ LE LK  ++ IEL+R
Sbjct: 343 EVSRLMETETTLRYARYADDMIFGFLKGADSEAAYKRFRTSFRENLEALKLEDSCIELLR 402

Query: 62  GRPRK 67
             P K
Sbjct: 403 RSPWK 407

BLAST of Cla97C04G071170 vs. ExPASy TrEMBL
Match: A0A117NGV6 (Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 2   KINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIR 61
           KI+ FM+ EE +GYVRYADDMIFAIK+G +SE VY R K+  +K L +LK AETSIELIR
Sbjct: 91  KIHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIELIR 150

Query: 62  GRPRK 67
           G PRK
Sbjct: 151 GIPRK 155

BLAST of Cla97C04G071170 vs. ExPASy TrEMBL
Match: A0A5N6L0M6 (Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025303 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 2   KINSFMQIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIR 61
           +++  M+ E  + Y RYADDMIF   +G +SEA Y R +   ++ LE LK  ++ IEL+R
Sbjct: 343 EVSRLMETETTLRYARYADDMIFGFLKGADSEAAYKRFRTSFRENLEALKLEDSCIELLR 402

Query: 62  GRPRK 67
             P K
Sbjct: 403 RSPWK 407

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KUM47405.15.7e-1467.69cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse tran... [more]
QWQ49911.13.7e-0548.39hypothetical protein [Zelkova schneideriana][more]
DAD25595.11.4e-0445.16TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_as... [more]
KAB8468469.14.1e-0441.54hypothetical protein FH972_025303 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A117NGV62.8e-1467.69Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1[more]
A0A5N6L0M62.0e-0441.54Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G071170.1Cla97C04G071170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion