Cla97C04G070530 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G070530
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	Cla97Chr04: 13109777 .. 13112247 (-)
RNA-Seq Expression	Cla97C04G070530
Synteny	Cla97C04G070530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAAGAGAGAAGAGGGGAGAATCAAACGACCGAAAATAAAACTTGCCCGATTATTAGGGTAAGTTTTGAGGGGGTAAAACGGTAGGACAAACATGGGTAATAAATACCCACCCAACCCAACCCAACCCAACCCATACCCATTTATCAAACACCCCCTAAAATTGTTAGTGAATAAAAGCAAATTTGTTATCATCAAAACATCTTTATTATATAAAATTAATTAATTTAAAATTGAGGACAAAAAAGCCAACATAGTGATTTTTAAATTTTGGGAAATATCAAATTTTGCATAAGAATTAAGATTTGGAAAATACATAGAATCTCAATCTTAATCTTGCGTGAGATTTCACCAACAAAACCCAAATATATAGAACTTGGTGTTAATCCTACCCGAGACTAAATAGAAAAAAAGACCAAAATATTCGATAAGATTAAAAAAAGTTAATTTTTTAATCTAAATTTTGGAGACCGATCTTAGTCAAATCTCAGCCAAAACTGACCAAGAAACTATTTTAATAAATATTCTAAAAAGATGCTAATTTTAAAAGATGAAATTCTTCCGAGCTAATTCTAACAATTTTCCAAATTGATTCTTTAATTGGTAATTCTATCGTATAGTTTTATACTCAAGGCGATCAATCAATGCAACAAAGAGGTTTGATTTTATTATTACTTTTTGCTTTGACATGAATTTAATGCATCTCCAACCTTTTTCGTTGGTTTGTGGGTACTTCGTGTTCTGTTGGCTGGAACCAATTATTAAAACAATTTTGAATTACTACAAACATACTGCGGGATTTCAAATAAAACATTTTAAATTTACTCCTTTCAATGATCATTTGAATTTTGATTTTTAAAAATTAAGATTATTGACACTATATTGCCTATAAATTTTTCTTGCTTACAAACTACTTTTCCACCAATATTTTCAAAAATCACGCTAAATTTTGAGAACTAAAATACAATAATTTTCAAAAACTTAATTTTATTTTTAAAATTTAACTAAGAAATCAAGTGTTTCTCCCTCAAATGTGAAAACCATAGAATTTATGAGAAACTAGTTCAAATTTTAAAAACTAAGAATTAAAAACAAAATCATTACCAAACAAAACTTACTCTTCTTAATTTTGAAATGTGACTTAAATTTTTAAGAACGCCCTTAAAAAGTAGATATCACAAACAAAAAAATTAATAGGTCTACAGGACATAAGCTTAAATTTCAAAAGTCAAACCAAATGATTATCAACAAAACATCGTTTTTTAATTTAGCTTTAATTTTTTAATACATTCTCATAAATTACATAACAAAACAAAGAAATGGTAAAAATAATATTTATAAATTTAATTTTTAAAAGGAAAATACTAATCAAAGAAATTTGTCCACTCAGCTTCTGTGTAACAAAATAAGTTTCTTGGTCCGTAAACTTGGGAAGATGTTGCCAAAAAAAAAAAAATTAAAAATTAAAAATTAAAAATCTATGCATTGGAAAAAGCTAAAAAGAAAGTCACACTTTGAACCTGATGGGCTAAATGCTTTGTTCTCTCAACGTTATTGGGAGGTGGTGGGAACTGATGTTTTAAGCTTGTGTCTCAACATGCTGAGTGGGAACTGATGTTTCTAGCGCCTATCAGCGATGTTTAATACAAGACTGTGGCCAAAGTTTTTACTGATCGTTTATAAATGACAATGCACTCGTTAGCTTTGAATACAACCCTCAAACTAGACATGAGTTATGATCAAGTTGAATGGAGTTTCCTTTGACAGGCAATGACCAAAAAGGGTTTCTGTAGCCGCTAGATGCAAAAGATCGCAATGTGTTGAGATTGTTACATTCTCGATCTTTCTCAACGTGGGTAGTCACAGACACTTGTGATCATCGAGAGGATTGCATCAAGACCAGGAAATCCTCTTTCACCCTATCTGCTTCTCATATTCGAAAGGTCTTTCAACCCTTTTTCAAGTGGAGAGAAGAGGTTCTTTTCCAGGTTTGCGTATCAACCTATACAACCCTTCTATTTTTCACTCTTTTTTCTTTTTTTTTTTCTCTTTTTTTTTTTTTGGTTGTAGATGACAACTTGCGTTTCTTTTCGGCTCGAGAAAATGATTGACATGTGATTAAATAGGTGTTGAAGACATATGAGCATGCCTCTATGCAAGTGATCAACTATAGCAAATCCATGTTTATCAGCAAGAATACCCATTGGGAGGTGTTTAGTAAAATCCAAGAAGCCTTGGGGATTTGTTATTCTACCTCATTAGGTCAATACCTGGGACTACCTTCGCAAATCTCTAAGAGTAAATGTCAAGTCTTTAGTAATCTTAAGGATCAAATTTGGAAGCTTCTCCAAGGGTCGAAGGAAAAGCTCTTTCCGAGGGACGATAAAGAAGTGCTAATTAATGTCGTGACGCAAGCCATACCAATTTATACTATGAGTAGACTTCGTCTGCTTAGGGAGCCTTTGTGA

mRNA sequence

ATGAGGGAAGAGAGAAGAGGGGAGAATCAAACGACCGAAAATAAAACTTGCCCGATTATTAGGCCGCTAGATGCAAAAGATCGCAATGTGTTGAGATTGTTACATTCTCGATCTTTCTCAACGTGGGTAGTCACAGACACTTGTGATCATCGAGAGGATTGCATCAAGACCAGGAAATCCTCTTTCACCCTATCTGCTTCTCATATTCGAAAGGTCTTTCAACCCTTTTTCAAGTGGAGAGAAGAGGTTCTTTTCCAGGTGTTGAAGACATATGAGCATGCCTCTATGCAAGTGATCAACTATAGCAAATCCATGTTTATCAGCAAGAATACCCATTGGGAGGTGTTTAGTAAAATCCAAGAAGCCTTGGGGATTTGTTATTCTACCTCATTAGGTCAATACCTGGGACTACCTTCGCAAATCTCTAAGAGTAAATGTCAAGTCTTTAGTAATCTTAAGGATCAAATTTGGAAGCTTCTCCAAGGGTCGAAGGAAAAGCTCTTTCCGAGGGACGATAAAGAAGTGCTAATTAATGTCGTGACGCAAGCCATACCAATTTATACTATGAGTAGACTTCGTCTGCTTAGGGAGCCTTTGTGA

Coding sequence (CDS)

ATGAGGGAAGAGAGAAGAGGGGAGAATCAAACGACCGAAAATAAAACTTGCCCGATTATTAGGCCGCTAGATGCAAAAGATCGCAATGTGTTGAGATTGTTACATTCTCGATCTTTCTCAACGTGGGTAGTCACAGACACTTGTGATCATCGAGAGGATTGCATCAAGACCAGGAAATCCTCTTTCACCCTATCTGCTTCTCATATTCGAAAGGTCTTTCAACCCTTTTTCAAGTGGAGAGAAGAGGTTCTTTTCCAGGTGTTGAAGACATATGAGCATGCCTCTATGCAAGTGATCAACTATAGCAAATCCATGTTTATCAGCAAGAATACCCATTGGGAGGTGTTTAGTAAAATCCAAGAAGCCTTGGGGATTTGTTATTCTACCTCATTAGGTCAATACCTGGGACTACCTTCGCAAATCTCTAAGAGTAAATGTCAAGTCTTTAGTAATCTTAAGGATCAAATTTGGAAGCTTCTCCAAGGGTCGAAGGAAAAGCTCTTTCCGAGGGACGATAAAGAAGTGCTAATTAATGTCGTGACGCAAGCCATACCAATTTATACTATGAGTAGACTTCGTCTGCTTAGGGAGCCTTTGTGA

Protein sequence

MREERRGENQTTENKTCPIIRPLDAKDRNVLRLLHSRSFSTWVVTDTCDHREDCIKTRKSSFTLSASHIRKVFQPFFKWREEVLFQVLKTYEHASMQVINYSKSMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRLLREPL

Homology

[Close]

BLAST of Cla97C04G070530 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-17
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 98  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKSKCQVFSNLKDQI 157
           ++NY KSMF +S+NT   V + I+  L +  +  +GQYLGLPSQ S++KCQVF+N+ +++
Sbjct: 1   MVNYEKSMFMVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRV 60

Query: 158 WKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR 194
           W+ LQG KEKLF    KEVLI  V QAIP Y+MS  R
Sbjct: 61  WQFLQGWKEKLFSSGGKEVLIKAVAQAIPNYSMSCFR 97

[Close]

BLAST of Cla97C04G070530 vs. NCBI nr
Match: XP_030923017.1 (uncharacterized protein LOC115949892 [Quercus lobata])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 87  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKSK 146
           +L  YEHAS Q IN  K ++F S NTH EV + I+  LG+  ++   QYLGLPS + +SK
Sbjct: 710 ILYRYEHASGQCINRGKTNLFFSSNTHPEVQAAIKAFLGLTVTSRFEQYLGLPSLVGRSK 769

Query: 147 CQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
            + FS +K++IWK L+G KE+L  +  +E+L+  V QAIPIYTMS  RL
Sbjct: 770 KKSFSLIKERIWKKLKGWKERLLSQAGREILVKAVIQAIPIYTMSCFRL 818

[Close]

BLAST of Cla97C04G070530 vs. NCBI nr
Match: XP_030929772.1 (uncharacterized protein LOC115955672 [Quercus lobata])

HSP 1 Score: 98.2 bits (243), Expect = 8.4e-17
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 87  VLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKSK 146
           +L  YEHAS Q IN  K ++F S NTH EV + I+  LG+  ++   QYLGLPS + +SK
Sbjct: 135 ILYRYEHASGQCINRGKTNLFFSSNTHPEVQAAIKAFLGLPVTSRFEQYLGLPSLVGRSK 194

Query: 147 CQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
            + FS +K++IWK L+G KE+L  +  +E+L+  V QAIPI+TMS  RL
Sbjct: 195 KKSFSLIKERIWKKLKGWKERLLSQAGREILVKAVIQAIPIFTMSCFRL 243

[Close]

BLAST of Cla97C04G070530 vs. NCBI nr
Match: XP_030968750.1 (uncharacterized protein LOC115989220 [Quercus lobata])

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-15
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 84  LFQVLKTYEHASMQVINYSKS-MFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQIS 143
           L ++LK YE AS Q +N  KS +  S NT  E  S++ E LG    T  G+YLGLPS I 
Sbjct: 849 LVEILKLYEAASGQKVNADKSAVSFSHNTTPEARSEVLEILGPMQDTRQGKYLGLPSVIG 908

Query: 144 KSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMS 191
           KSK QVF+ +K+++ K L G KEK+     KE+LI  VTQ IP YTMS
Sbjct: 909 KSKNQVFAEIKERVGKKLSGWKEKMLSMGGKEILIKAVTQTIPTYTMS 956

[Close]

BLAST of Cla97C04G070530 vs. NCBI nr
Match: XP_030936294.1 (uncharacterized protein LOC115961454 [Quercus lobata])

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-15
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 84  LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQIS 143
           L ++L TYE AS Q IN +K ++F SK+T ++V   I+EALG+       +YL LPS + 
Sbjct: 204 LLEILVTYERASGQQINRAKTTLFFSKSTSYDVQEVIKEALGVQVVQQYEKYLALPSLVG 263

Query: 144 KSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
           + K + F+NLK +IWK LQG + KL     +E+L+  V QA+P YTMS  +L
Sbjct: 264 RKKKESFANLKQRIWKKLQGWEAKLLSHVGREILLKAVAQALPTYTMSCFKL 315

[Close]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL
Match: A0A6J1CV63 (uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014662 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 98  VINYSKSMF-ISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQISKSKCQVFSNLKDQI 157
           ++NY KSMF +S+NT   V + I+  L +  +  +GQYLGLPSQ S++KCQVF+N+ +++
Sbjct: 1   MVNYEKSMFMVSRNTSRCVAANIESELHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRV 60

Query: 158 WKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLR 194
           W+ LQG KEKLF    KEVLI  V QAIP Y+MS  R
Sbjct: 61  WQFLQGWKEKLFSSGGKEVLIKAVAQAIPNYSMSCFR 97

[Close]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL
Match: A0A2N9J936 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60851 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 84   LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQIS 143
            L+ +LK YE AS Q IN  K ++F SKNT   + + I    G   S+   +YLGLP  + 
Sbjct: 1611 LYAILKLYERASGQKINEEKTAIFFSKNTPNSIRANILSMFGTSSSSKFEKYLGLPPILG 1670

Query: 144  KSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
            +SK + F+ +KD+IWK LQG KEKL  +  +E+LI  V QAIPIY MS  +L
Sbjct: 1671 RSKKRAFNEIKDRIWKKLQGWKEKLLSQAGREILIKAVVQAIPIYAMSCFKL 1722

[Close]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL
Match: A0A2N9I946 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48253 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 84   LFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQIS 143
            L+ +LK YE AS Q IN  K ++F SKNT   + + I    G   S+   +YLGLP  + 
Sbjct: 1396 LYAILKLYERASGQKINEEKTAIFFSKNTPNSIRANILSMFGTSSSSKFEKYLGLPPILG 1455

Query: 144  KSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
            +SK + F+ +KD+IWK LQG KEKL  +  +E+LI  V QAIPIY MS  +L
Sbjct: 1456 RSKKRAFNEIKDRIWKKLQGWKEKLLSQAGREILIKAVVQAIPIYAMSCFKL 1507

[Close]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL
Match: A0A2N9G5C3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22630 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 83   VLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQI 142
            VL  +LK YE AS Q IN  K + F SKNT   V S+I    G   ++   +YLGLPS +
Sbjct: 1088 VLQTILKLYERASGQKINEEKTAFFFSKNTPVAVRSEILSMFGSSPASQFEKYLGLPSIL 1147

Query: 143  SKSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMSRLRL 195
             +SK + F+ +KD+IWK LQG KE L  +  +E+LI  V QAIPIY MS  +L
Sbjct: 1148 GRSKKRAFNEIKDRIWKRLQGWKENLLSQAGREILIKAVVQAIPIYAMSCFKL 1200

[Close]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL
Match: A0A2N9GHD2 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26712 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-15
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 82  EVLFQVLKTYEHASMQVINYSK-SMFISKNTHWEVFSKIQEALGICYSTSLGQYLGLPSQ 141
           E L  +L+TYEHAS Q IN  K ++F S NT  +    I    G   +T   +YLGLP  
Sbjct: 809 EALLALLQTYEHASGQKINCGKTALFFSHNTQPDCRQIILNLFGTSATTQFEKYLGLPPV 868

Query: 142 ISKSKCQVFSNLKDQIWKLLQGSKEKLFPRDDKEVLINVVTQAIPIYTMS 191
           I KSK   F+++KD++W+ LQG KEK+  +  +EVLI  V QAIP Y MS
Sbjct: 869 IGKSKKNAFNDIKDRVWRRLQGWKEKMLSQAGREVLIKAVIQAIPTYAMS 918

The following BLAST results are available for this feature:

BLAST of Cla97C04G070530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145148.1	1.0e-17	52.58	uncharacterized protein LOC111014662 [Momordica charantia]	[more]
XP_030923017.1	1.7e-17	49.54	uncharacterized protein LOC115949892 [Quercus lobata]	[more]
XP_030929772.1	8.4e-17	48.62	uncharacterized protein LOC115955672 [Quercus lobata]	[more]
XP_030968750.1	2.1e-15	50.00	uncharacterized protein LOC115989220 [Quercus lobata]	[more]
XP_030936294.1	4.6e-15	44.64	uncharacterized protein LOC115961454 [Quercus lobata]	[more]

BLAST of Cla97C04G070530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV63	4.8e-18	52.58	uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A2N9J936	7.7e-16	46.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60851 PE=4 SV=1	[more]
A0A2N9I946	7.7e-16	46.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48253 PE=4 SV=1	[more]
A0A2N9G5C3	1.7e-15	47.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22630 PE=4 SV=1	[more]
A0A2N9GHD2	2.2e-15	46.36	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2671...	[more]

BLAST of Cla97C04G070530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 83..191
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 83..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G070530.1	Cla97C04G070530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity