Cla97C04G070140 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G070140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cla97Chr04: 8921645 .. 8922507 (+)
RNA-Seq Expression	Cla97C04G070140
Synteny	Cla97C04G070140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCCCCGATGGCTCAACAAATGCCTCTGCCCCACCAACTCCTAGTTACTCTTCCATTTCTTCCAACTACTCCTTCGGTTGTGTCCCCATTTCCAAATATTTCTCAAGCTCTTACTGTTAAGCTTTCTATCCAAACTACTTACCCTGGAAAAATCAGCTCCTCAATCTCATCATGGGCCACAGTTTAGAGTGTTTTATTCATGGTACGTTCCCTCAACCCCAAAATTTTTGGATCCTCAAAGAACTCAGGTAAATCCCTATTTTACATTCTGGCAAAAGTGTAATAGAACTATTATGAGTTGTTTTTATTCCTCTCTTAATGAAGATAAGATGGGTGAAATCGTGGGATATGAAGCTGCCTTTGATATTTGGAAGCCCAACGTATAGTGTATGAATCCTCTTCCACAGCCCGAATCATGGTCTTCGTAGTCATCTTCAGAAAGTCCGAAAGGATGGTCTCAACGTCTCTCACTGTTTGGCTCAAATTAAAGATGTTGCTGATAAATTCTCTGCCATTGGTGAACCATTGTTTTATAGAGATCATCTTGGTTATATTTTGGAGGGGCTTGGAAATGAATATAATGTGTTTGTTACTTCCAAACAGAATCGCACTAATAGACCTTCGATTGTTGATGTTTGGAGCCTCTTGATGGCCTATGAAGCATGACTTGAAAAGCAGACAGTCGTTGACCAGCTCGATCTTGTTCAGGCTAATGTTGCCAACCTCTCATTTGGACAATCTTCCCACCGTCCGCCTTGGTCCCCATCAGGTAAGCCTACATCTCAACCTGCCTCACCTTCTCCAGGTATCACTATTCCCCCTAATCAAAATAATACCCCCTTTAATCCTGGTCCTTAA

mRNA sequence

ATGCCCTCCCCGATGGCTCAACAAATGCCTCTGCCCCACCAACTCCTAGTTACTCTTCCATTTCTTCCAACTACTCCTTCGGTTGTGTCCCCATTTCCAAATATTTCTCAAGCTCTTACTGTTAAGCTTTCTATCCAAACTACTTACCCTGGAAAAATCAGCTCCTCAATCTCATCATGGGCCACAATAAGATGGGTGAAATCGTGGGATATGAAGCTGCCTTTGATATTTGGAAGCCCAACCCCGAATCATGGTCTTCGTAGTCATCTTCAGAAAGTCCGAAAGGATGGTCTCAACGTCTCTCACTGTTTGGCTCAAATTAAAGATGTTGCTGATAAATTCTCTGCCATTGGTGAACCATTGTTTTATAGAGATCATCTTGGTTATATTTTGGAGGGGCTTGGAAATGAATATAATGTGTTTGTTACTTCCAAACAGAATCGCACTAATAGACCTTCGATTGTTGATACAGTCGTTGACCAGCTCGATCTTGTTCAGGCTAATGTTGCCAACCTCTCATTTGGACAATCTTCCCACCGTCCGCCTTGGTCCCCATCAGGTAAGCCTACATCTCAACCTGCCTCACCTTCTCCAGGTATCACTATTCCCCCTAATCAAAATAATACCCCCTTTAATCCTGGTCCTTAA

Coding sequence (CDS)

ATGCCCTCCCCGATGGCTCAACAAATGCCTCTGCCCCACCAACTCCTAGTTACTCTTCCATTTCTTCCAACTACTCCTTCGGTTGTGTCCCCATTTCCAAATATTTCTCAAGCTCTTACTGTTAAGCTTTCTATCCAAACTACTTACCCTGGAAAAATCAGCTCCTCAATCTCATCATGGGCCACAATAAGATGGGTGAAATCGTGGGATATGAAGCTGCCTTTGATATTTGGAAGCCCAACCCCGAATCATGGTCTTCGTAGTCATCTTCAGAAAGTCCGAAAGGATGGTCTCAACGTCTCTCACTGTTTGGCTCAAATTAAAGATGTTGCTGATAAATTCTCTGCCATTGGTGAACCATTGTTTTATAGAGATCATCTTGGTTATATTTTGGAGGGGCTTGGAAATGAATATAATGTGTTTGTTACTTCCAAACAGAATCGCACTAATAGACCTTCGATTGTTGATACAGTCGTTGACCAGCTCGATCTTGTTCAGGCTAATGTTGCCAACCTCTCATTTGGACAATCTTCCCACCGTCCGCCTTGGTCCCCATCAGGTAAGCCTACATCTCAACCTGCCTCACCTTCTCCAGGTATCACTATTCCCCCTAATCAAAATAATACCCCCTTTAATCCTGGTCCTTAA

Protein sequence

MPSPMAQQMPLPHQLLVTLPFLPTTPSVVSPFPNISQALTVKLSIQTTYPGKISSSISSWATIRWVKSWDMKLPLIFGSPTPNHGLRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSKQNRTNRPSIVDTVVDQLDLVQANVANLSFGQSSHRPPWSPSGKPTSQPASPSPGITIPPNQNNTPFNPGP

Homology

[Close]

BLAST of Cla97C04G070140 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-26
Identity = 71/136 (52.21%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 79  SPTPNHGLRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEY 138
           S  P  G  S LQK++KDGL VS  LAQIKDV D F+AIGEPL YRDHL YILEGLG+EY
Sbjct: 25  SIAPIMGFCSQLQKIKKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEY 84

Query: 139 NVFVTSKQNRTNRPSIVD---------------TVVDQLDLVQANVANLSFGQSSHRPPW 198
           N FV+S  NRTNRPSI D               T  D L L+QANVA+LS    +  P W
Sbjct: 85  NPFVSSIHNRTNRPSIADVRNLLITYDSRLEKQTATDHLQLIQANVAHLSINSQNRHPQW 144

Query: 199 SPSGKPTSQPASPSPG 200
               + + + ++PS G
Sbjct: 145 QQHNRSSIRSSTPSVG 160

[Close]

BLAST of Cla97C04G070140 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-22
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 85  GLRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTS 144
           GL++ LQ +RKDG +VS  LA+IK++ADKF+A+GEPL YRDHL ++L+GLG+EYN FVTS
Sbjct: 134 GLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVTS 193

Query: 145 KQNRTNRPSIVD---------------TVVDQLDLVQANVANLSFGQSSHRPP 183
             NR + PS+ D                 VDQL++ QAN+ NLS   +S RPP
Sbjct: 194 IHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPP 246

[Close]

BLAST of Cla97C04G070140 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-18
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 90  LQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSKQNRT 149
           +Q+V+KDGL+VS  LA+IK++  K S+IGEP+  +DH+ YI+EGLG EYN FVTS QNR+
Sbjct: 8   IQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRS 67

Query: 150 NRPSIVD---------------TVVDQLDLVQANVANLSFGQSS-----HRPPWSPSGKP 209
           +  ++ D                 VDQL++VQANVANL   + S     HR P   S +P
Sbjct: 68  DMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTRNHRVPSQHSPRP 127

Query: 210 TSQPASPSPGITIPPNQNNTP 211
            +      PG+   PNQN+ P
Sbjct: 128 FN--FKTQPGLLGKPNQNSQP 146

[Close]

BLAST of Cla97C04G070140 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-16
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 86  LRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSK 145
           L++ LQK+RKD L++S  L+QIKDVADKFS +GE + YRDHL +IL+GLG+EYN FVTS 
Sbjct: 3   LKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSI 62

Query: 146 QNRTNRPSIVD---------------TVVDQLDLVQANVANLSFGQSSHRPPWSPSGKPT 205
           QN  +  S+ D                 +D L++ QA ++ LSF  +S R    P    +
Sbjct: 63  QNHVDNLSVEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLSFQHNSKRNALRPFPNHS 122

Query: 206 SQPASPSPGIT--IPPNQNNTPFNP 214
           S    PSP  +  +P   N+    P
Sbjct: 123 SL-ILPSPNFSPILPSTSNSVHARP 146

[Close]

BLAST of Cla97C04G070140 vs. NCBI nr
Match: TXG68750.1 (hypothetical protein EZV62_003685 [Acer yangbiense])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 87  RSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSKQ 146
           RS L  ++K+G  ++  L Q K++ DKF+AIGEPL YRDHLGY+LEGLG+EY+ FVTS +
Sbjct: 77  RSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTSIE 136

Query: 147 NRTNRPSIVD 157
           NR ++PSI D
Sbjct: 137 NRVDKPSIED 146

[Close]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-23
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 85  GLRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTS 144
           GL++ LQ +RKDG +VS  LA+IK++ADKF+A+GEPL YRDHL ++L+GLG+EYN FVTS
Sbjct: 134 GLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVTS 193

Query: 145 KQNRTNRPSIVD---------------TVVDQLDLVQANVANLSFGQSSHRPP 183
             NR + PS+ D                 VDQL++ QAN+ NLS   +S RPP
Sbjct: 194 IHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPP 246

[Close]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 90  LQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSKQNRT 149
           +Q+V+KDGL+VS  LA+IK++  K S+IGEP+  +DH+ YI+EGLG EYN FVTS QNR+
Sbjct: 8   IQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRS 67

Query: 150 NRPSIVD---------------TVVDQLDLVQANVANLSFGQSS-----HRPPWSPSGKP 209
           +  ++ D                 VDQL++VQANVANL   + S     HR P   S +P
Sbjct: 68  DMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTRNHRVPSQHSPRP 127

Query: 210 TSQPASPSPGITIPPNQNNTP 211
            +      PG+   PNQN+ P
Sbjct: 128 FN--FKTQPGLLGKPNQNSQP 146

[Close]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-16
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 87  RSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSKQ 146
           RS L  ++K+G  ++  L Q K++ DKF+AIGEPL YRDHLGY+LEGLG+EY+ FVTS +
Sbjct: 77  RSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTSIE 136

Query: 147 NRTNRPSIVD 157
           NR ++PSI D
Sbjct: 137 NRVDKPSIED 146

[Close]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL
Match: A0A5C7I9Y1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007395 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.8e-14
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 86  LRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTSK 145
           L+S L  +RK+G  ++  L Q KD+ADKF+ +GEPL YR HLGY  EGLG EY+ FVTS 
Sbjct: 91  LKSQLTNLRKEGTTINQYLFQFKDIADKFATVGEPLSYRYHLGYFSEGLGPEYDAFVTSI 150

Query: 146 QNRTNRPSIVD 157
           +N  +RPSI D
Sbjct: 151 ENIVDRPSIED 161

[Close]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL
Match: A0A438BWQ3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_082664 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-13
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 85  GLRSHLQKVRKDGLNVSHCLAQIKDVADKFSAIGEPLFYRDHLGYILEGLGNEYNVFVTS 144
           GL S LQ+++K+G+ +S  LA+IK+V DK+SA+GEPL YRD L Y L GL  EY+ FVTS
Sbjct: 32  GLNSQLQRIKKEGITISEYLARIKEVFDKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTS 91

Query: 145 KQNRTNRPS 154
             NR+N+PS
Sbjct: 92  IYNRSNKPS 100

The following BLAST results are available for this feature:

BLAST of Cla97C04G070140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887133.1	2.2e-26	52.21	uncharacterized protein LOC120077323 [Benincasa hispida]	[more]
XP_022155181.1	1.5e-22	51.33	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
XP_022148871.1	2.8e-18	43.97	uncharacterized protein LOC111017438 [Momordica charantia]	[more]
XP_038891713.1	2.0e-16	41.38	uncharacterized protein LOC120081111 [Benincasa hispida]	[more]
TXG68750.1	1.3e-15	58.57	hypothetical protein EZV62_003685 [Acer yangbiense]	[more]

BLAST of Cla97C04G070140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	7.0e-23	51.33	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D6N7	1.4e-18	43.97	uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5C7IHH0	6.4e-16	58.57	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1	[more]
A0A5C7I9Y1	7.8e-14	56.34	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007395 PE=4 SV=1	[more]
A0A438BWQ3	1.3e-13	57.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_082664 PE=4 SV=1	[more]

BLAST of Cla97C04G070140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G070140.2	Cla97C04G070140.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding