Cla97C04G069650 (gene) Watermelon (97103) v2.5

Overview
NameCla97C04G069650
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionGlial fibrillary acidic protein-like
LocationCla97Chr04: 6469196 .. 6469636 (-)
RNA-Seq ExpressionCla97C04G069650
SyntenyCla97C04G069650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA

mRNA sequence

ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA

Coding sequence (CDS)

ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA

Protein sequence

MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE
Homology
BLAST of Cla97C04G069650 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 77/146 (52.74%), Postives = 106/146 (72.60%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           +++KNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+   ++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRME 199

BLAST of Cla97C04G069650 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.5e-31
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M++KNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+  +EYKSQL E + +N  LQ+ V S E QLL+CR AREV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+  G++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRME 199

BLAST of Cla97C04G069650 vs. NCBI nr
Match: KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 79/152 (51.97%), Postives = 115/152 (75.66%), Query Frame = 0

Query: 2   KRKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
           + KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+
Sbjct: 41  QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100

Query: 62  QKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLK 121
           Q+I A ++ LQNS KEYK ++TE + +N LLQE V S EHQLL+CRNAREVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160

Query: 122 KEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE 147
            E++E+ A+FA+W+DEY+++R  Y++V+GQ+E
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIE 192

BLAST of Cla97C04G069650 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-26
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           +++KNKRLLR++  LH E E +KE                  FQ+AL EQA SSQ+    
Sbjct: 80  VRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQAISSQQTAMG 139

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 140 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 199

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+   ++E
Sbjct: 200 SIDFMMWKDEYETLRRKYDDAIRRME 207

BLAST of Cla97C04G069650 vs. NCBI nr
Match: KAA0034829.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-20
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 0

Query: 2   KRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEV 61
           K+K  +L ++ D L+ EA   ++  K L +        +AN    +E + T+      E+
Sbjct: 172 KQKRLQLEKENDSLNTEAIQVRKKNKSLLRN-------IANLHEEIEAKTTT-----MEI 231

Query: 62  KNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMS 121
           + LQNS KEYKSQL +VE++N  LQ+ V S E QLL+CR A+EV+TDDYAQL ++YQEMS
Sbjct: 232 EVLQNSIKEYKSQLIQVENKNRFLQKAVNSSESQLLICRKAKEVLTDDYAQLIEKYQEMS 291

Query: 122 ANFAVWKDEYSMLRRDYDNVRGQVE 147
            +F +WKDEY  LRR YD+  G++E
Sbjct: 292 IDFMMWKDEYETLRRKYDDAIGRME 304

BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 77/146 (52.74%), Postives = 106/146 (72.60%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           +++KNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+   ++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRME 199

BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M++KNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+  +EYKSQL E + +N  LQ+ V S E QLL+CR AREV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+  G++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRME 199

BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match: A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 79/152 (51.97%), Postives = 115/152 (75.66%), Query Frame = 0

Query: 2   KRKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
           + KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+
Sbjct: 41  QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100

Query: 62  QKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLK 121
           Q+I A ++ LQNS KEYK ++TE + +N LLQE V S EHQLL+CRNAREVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160

Query: 122 KEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE 147
            E++E+ A+FA+W+DEY+++R  Y++V+GQ+E
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIE 192

BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match: A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0

Query: 1   MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           +++KNKRLLR++  LH E E +KE                  FQ+AL EQA SSQ+    
Sbjct: 80  VRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQAISSQQTAMG 139

Query: 61  VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           ++ LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 140 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 199

Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
           S +F +WKDEY  LRR YD+   ++E
Sbjct: 200 SIDFMMWKDEYETLRRKYDDAIRRME 207

BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match: A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 0

Query: 2   KRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEV 61
           K+K  +L ++ D L+ EA   ++  K L +        +AN    +E + T+      E+
Sbjct: 172 KQKRLQLEKENDSLNTEAIQVRKKNKSLLRN-------IANLHEEIEAKTTT-----MEI 231

Query: 62  KNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMS 121
           + LQNS KEYKSQL +VE++N  LQ+ V S E QLL+CR A+EV+TDDYAQL ++YQEMS
Sbjct: 232 EVLQNSIKEYKSQLIQVENKNRFLQKAVNSSESQLLICRKAKEVLTDDYAQLIEKYQEMS 291

Query: 122 ANFAVWKDEYSMLRRDYDNVRGQVE 147
            +F +WKDEY  LRR YD+  G++E
Sbjct: 292 IDFMMWKDEYETLRRKYDDAIGRME 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025321.12.6e-3152.74glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0065294.17.5e-3152.05glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033848.12.2e-3051.97glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... [more]
XP_008464352.15.6e-2650.00PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
KAA0034829.12.7e-2045.52glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SM491.3e-3152.74Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VDD93.6e-3152.05Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BQ931.1e-3051.97Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CLQ12.7e-2650.00glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
A0A5A7T0F31.3e-2045.52Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..46
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availableGENE3D1.10.287.1490coord: 2..146
e-value: 8.5E-7
score: 30.4
NoneNo IPR availableSUPERFAMILY90257Myosin rod fragmentscoord: 20..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G069650.1Cla97C04G069650.1mRNA