Cla97C03G065730 (gene) Watermelon (97103) v2.5

Overview
NameCla97C03G065730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description30S ribosomal protein S16
LocationCla97Chr03: 29120769 .. 29122896 (+)
RNA-Seq ExpressionCla97C03G065730
SyntenyCla97C03G065730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGAGCCCTAGCGAGTGGGAAGTGGAGGCGCCAGTTCTGTTCTCTAATCCGTCGTCATTTTCAATTTGGCGAATTTCCAAGAGATTTGCAGGGTTTTACGAGATCGAAAATGGTGGTTCGAATTCGGTTGTCCAGGTTTGGTTGTAAGAACAAGCCCTTTTACAGGGTGATGGCTGCCGATAGCCGATATCCTCGAGACGGCAGACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTGATTGATGACTTCTGCTACTTGTGTATTGGAATTTTGATTCTTGATTTGAATATTTCATTTCTGTTCTTGATTTGAGTAATTTTTGTTTGCAGGTCAAGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTAAGTGATTGCTTTTGACTTATATGTTTTGCTTCATTCTAAATATGCTTGGTTCTTGAATTTAAACGCTGGGTTGCAGTTGTTAGTGCTAGTTTACCTGTTAGTCGGTATAGAGAATACTCTTTTGTCATTGCTTCTTCAATCGAGTTTTACTTGATTTTTTTTCTTCCGAATTCGCGATCTTTCTCCGCATTTCTTTGAGTGTTATTAAGAGAATGGCCAACTTGTTTTCATTTGGTTTTGGTTATTGGGCACAAAACAGCCCTTCTATACAGATATTCGGCCAACTATTAGAATATTAGTAACTGCTCCCAGATTTTCCTCCATACTTTCGAGAACACCTGGTGAAGAGACTGTATTCCTTTTTATTTCTCGTCAAACAAATGGCGTCTTCTTTTGGTAGCCCATAACCAATGTAGATCTCACCTTATTTACCACAAACCTCTAGTCCGTCAAAGTCACTGACTGGGTAGGTCGTGAATCCCTGAAACGGGCTATGTAATATATGTCTTTGTTTAATTTGTTCATTATGTGCCAATACGAACAATGGAACCTACTCAGAATAATCCACCTTTTGCGAGAACAAATCCATCATCAAAATTGGTGGGATCACTAATCTTTGAATTTCTGGCTCACAAATAAAGCACGTATTTCACCTTGCTGTTAATGTACGCATTATAGTTAGGCTAACAAGTTAAGCTTTTAATTAGAATAAGTTAACGAAACAAACCAGCTAAAACTTTAAGGCCTAGTGGTGAAGCAACGTTCTATCGAAACAAGAGGTCCTAATTCCAAATTTATGCTACATAATCACATCTTGCACCTAATGAATCAAAGAATGAAAAAATGGTTTGGATGGTTGAGAAGTGATTACATTTTCTTAATAACATAAGCTTTTGAATGTAGTAGTAATTTAATAGGTTAGGAGTTTGAGGAGAGATTACATTTTCTAGTGGTGAAGATGATAATGAAAGAATGAAAAGGGAGATCTGGCTATCAAGTTGACGGAGACAATGAGGAAATCCCTAGTCATTTGATGAAGTAATTAGGCTGCTCCTTAGGAATGTAGAATTTTGTGTTTGCTATCGTTTGCATTTCTAATGCAAGTTCTGATTAATGATTAGTAAGACAGCTCAGAGGATGAAACATTTAAGATTAATTATTATCTTAGAAGATCATTCTTATTGTAAGGTCTCATGCAACGCATAAAAGTAAACCATCAGGTATAAGTTTTTAGCATTTAGAGTTTGGTCTCTCGTTTCTTTGTGGCTTAGAGCCTATCAGTTTTAGATTCCCCACTTCCTTGATTCCTCTAAGTTCCGTTGGCCCTTTGCTTTCTTTTCTTCCTTTTTCTTTTTTTCTTATATTTCAAAATGAGTTGCTATTAGCTGAGATTGGAGAATTTAGATTATTTTGCTGCATAAGCTTTGCTGTTTTACTATGGTAGTATTCATCTCAAATTCATAGGGAGGATAACCTTATCTTTCATACTAGTCATTTCTTCTCATCTCTCCCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCACCTCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTGACTGGACGTTTCGTTACTCCAGAGAAACCAACTAATGGTTCCAGTGGCAAAGATGGCAATGCTGATTCATAA

mRNA sequence

CCCGGAGCCCTAGCGAGTGGGAAGTGGAGGCGCCAGTTCTGTTCTCTAATCCGTCGTCATTTTCAATTTGGCGAATTTCCAAGAGATTTGCAGGGTTTTACGAGATCGAAAATGGTGGTTCGAATTCGGTTGTCCAGGTTTGGTTGTAAGAACAAGCCCTTTTACAGGGTGATGGCTGCCGATAGCCGATATCCTCGAGACGGCAGACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGGAGGATAACCTTATCTTTCATACTAGTCATTTCTTCTCATCTCTCCCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCACCTCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTGACTGGACGTTTCGTTACTCCAGAGAAACCAACTAATGGTTCCAGTGGCAAAGATGGCAATGCTGATTCATAA

Coding sequence (CDS)

ATGGTGGTTCGAATTCGGTTGTCCAGGTTTGGTTGTAAGAACAAGCCCTTTTACAGGGTGATGGCTGCCGATAGCCGATATCCTCGAGACGGCAGACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGGAGGATAACCTTATCTTTCATACTAGTCATTTCTTCTCATCTCTCCCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCACCTCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTGACTGGACGTTTCGTTACTCCAGAGAAACCAACTAATGGTTCCAGTGGCAAAGATGGCAATGCTGATTCATAA

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVKEDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLTGRFVTPEKPTNGSSGKDGNADS
Homology
[Close]
BLAST of Cla97C03G065730 vs. NCBI nr
Match: XP_038880698.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 127/149 (85.23%), Postives = 133/149 (89.26%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERV 
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERV- 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                   +H   +L HPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------NHSVVTLSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           R VDPL+GRFVTPEKPT+ SSGKDG+ADS
Sbjct: 121 RLVDPLSGRFVTPEKPTDSSSGKDGDADS 140

[Close]
BLAST of Cla97C03G065730 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 121/149 (81.21%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           RPVDPL+GRFVTPEKPT+ SS KDGNADS
Sbjct: 121 RPVDPLSGRFVTPEKPTDDSSSKDGNADS 129

[Close]
BLAST of Cla97C03G065730 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 241.5 bits (615), Expect = 4.6e-60
Identity = 122/149 (81.88%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           R VDPL+GRFVTPEKPT+ SSGKDG+ADS
Sbjct: 121 RLVDPLSGRFVTPEKPTDSSSGKDGDADS 129

[Close]
BLAST of Cla97C03G065730 vs. NCBI nr
Match: KAG7023670.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 3.3e-58
Identity = 118/149 (79.19%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           R VDPL+GR V+PEKPTN SS KDGNADS
Sbjct: 121 RVVDPLSGRIVSPEKPTNDSSSKDGNADS 129

[Close]
BLAST of Cla97C03G065730 vs. NCBI nr
Match: KAG6590008.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 5.6e-58
Identity = 118/149 (79.19%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           R VDPL+GR V+PEKPTN SS KDGNADS
Sbjct: 121 RVVDPLSGRIVSPEKPTNDSSRKDGNADS 129

[Close]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-51
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDG+HLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDT 117

Query: 121 RPVDPLTGRFVTPEKPT 138
           RPVDP+TGR+V  E  T
Sbjct: 121 RPVDPMTGRYVDAENKT 117

[Close]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-27
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDG+ +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Sbjct: 61  --------------------YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKST 112

Query: 121 -RPVDPLTGRFV 132
            + V P+TG  +
Sbjct: 121 SQHVSPITGEIL 112

[Close]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match: P62236 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rpsP PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V IRL+R G K +PFY V+ ADSR+PRDGR +E LGY+NPL  +D   R+ L+ ++VK
Sbjct: 1   MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGV 103
           +                    WL+ GAQPSD V R L  AGV
Sbjct: 61  D--------------------WLAKGAQPSDRVARFLDTAGV 82

[Close]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match: B3Q856 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V IRL+R G K +PFY V+ ADSR+PRDGR +E LGY+NPL  +D   R+ L+ ++VK
Sbjct: 1   MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGV 103
           +                    WL+ GAQPSD V R L  AGV
Sbjct: 61  D--------------------WLAKGAQPSDRVARFLDTAGV 82

[Close]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M ++IRL+R G K +PFYR++AADSR PRDGR +E LG YNPL  +D   R+ ++ ERV 
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERV- 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLP 105
                              +YWL  GA+P+D V R+L  A VLP
Sbjct: 61  -------------------QYWLGEGAKPTDRVARMLEAAEVLP 84

[Close]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/149 (81.21%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           RPVDPL+GRFVTPEKPT+ SS KDGNADS
Sbjct: 121 RPVDPLSGRFVTPEKPTDDSSSKDGNADS 129

[Close]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match: A0A6J1H8S5 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461591 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 118/149 (79.19%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGSSGKDGNADS 150
           R VDPL+GR V+PEKPTN SS KDGNADS
Sbjct: 121 RVVDPLSGRIVSPEKPTNDSSRKDGNADS 129

[Close]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 119/150 (79.33%), Postives = 124/150 (82.67%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGS-SGKDGNADS 150
           RPVDPL+GRF TP+K T+ S S KDG+ADS
Sbjct: 121 RPVDPLSGRFTTPQKATDDSNSSKDGDADS 130

[Close]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 119/150 (79.33%), Postives = 124/150 (82.67%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLTGRFVTPEKPTNGS-SGKDGNADS 150
           RPVDPL+GRF TP+K T+ S S KDGNADS
Sbjct: 121 RPVDPLSGRFTTPQKATDDSNSSKDGNADS 130

[Close]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.8e-57
Identity = 115/150 (76.67%), Postives = 125/150 (83.33%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDG+HLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT 120

Query: 121 RPVDPLTGRFVTPE-KPTNGSSGKDGNADS 150
           RPVDPL+GRFVTPE KPT+ S+G+ G+ADS
Sbjct: 121 RPVDPLSGRFVTPEKKPTDSSNGEVGDADS 130

[Close]
BLAST of Cla97C03G065730 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-52
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDG+HLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDT 117

Query: 121 RPVDPLTGRFVTPEKPT 138
           RPVDP+TGR+V  E  T
Sbjct: 121 RPVDPMTGRYVDAENKT 117

[Close]
BLAST of Cla97C03G065730 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDG+ +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  EDNLIFHTSHFFSSLPHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Sbjct: 61  --------------------YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKST 112

Query: 121 -RPVDPLTGRFV 132
            + V P+TG  +
Sbjct: 121 SQHVSPITGEIL 112

[Close]
BLAST of Cla97C03G065730 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGRHLEVLGYYNPLPGQ 47
          +V++RL R G K +  YR++A D RY R+GR L  +G+Y+P+  Q
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ 45

The following BLAST results are available for this feature:
BLAST of Cla97C03G065730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880698.11.8e-6485.2330S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa h... [more]
XP_022147743.12.7e-6081.2130S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia][more]
XP_038880699.14.6e-6081.8830S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h... [more]
KAG7023670.13.3e-5879.1930S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma... [more]
KAG6590008.15.6e-5879.1930S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita arg... [more]
BLAST of Cla97C03G065730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTS62.4e-5171.5330S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656861.8e-2745.4530S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
P622368.6e-1746.0830S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CG... [more]
B3Q8568.6e-1746.0830S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960... [more]
A8LMC01.1e-1645.1930S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14... [more]
BLAST of Cla97C03G065730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2511.3e-6081.2130S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ... [more]
A0A6J1H8S52.7e-5879.1930S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch... [more]
A0A6J1HXD71.4e-5779.3330S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1F6D01.4e-5779.3330S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch... [more]
A0A5D3CDW98.8e-5776.6730S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Cla97C03G065730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56940.11.7e-5271.53Ribosomal protein S16 family protein [more]
AT4G34620.11.3e-2845.45small subunit ribosomal protein 16 [more]
ATCG00050.14.1e-0644.44ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 9..60
e-value: 8.8E-18
score: 64.1
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 3..61
e-value: 5.5E-20
score: 69.2
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 1..60
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 80..131
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 2..100
score: 20.17675
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..125
e-value: 1.5E-42
score: 146.4
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 3..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..149
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 80..131
coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G065730.2Cla97C03G065730.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003735 structural constituent of ribosome