Cla97C03G062370 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G062370
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr03: 23196858 .. 23197513 (-)
RNA-Seq Expression	Cla97C03G062370
Synteny	Cla97C03G062370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTGTGATAAAGCCAAGTTTTCAAGCAGCCAAAAGCTAGTTTGATTGGATGTGCCAGTAGGGCTTCCTAACGTTCTATAATCAACTTAAGCTATCACGAAAAGGCTAAAGATAAAAAAAAGCGAATCATCTTTCTTTCTATACGATACGCAATTTCGAAATCAGGGAAAAATTCATCTTGATAGCACAGGAAAGAGAGAACATCTTCCTTCTGTGACATTTACCCCGAAAAAAAAGCCTATTCTATACCAGCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGCAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAACCTAAAGACTCGCAAGTTTTTTTCCTATACTTCCCACCGTGGCAGCCTCTAACTCTAAAGCGTTAGTATATATTATATAAAGTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

mRNA sequence

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Coding sequence (CDS)

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Protein sequence

MGKENPVLFSFLTSSKSDRKVPRYRVALLALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV

Homology

[Close]

BLAST of Cla97C03G062370 vs. NCBI nr
Match: KJB09803.1 (hypothetical protein B456_001G167900 [Gossypium raimondii])

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLCSNA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

[Close]

BLAST of Cla97C03G062370 vs. NCBI nr
Match: KAG4125508.1 (hypothetical protein ERO13_D10G099550v2 [Gossypium hirsutum])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. NCBI nr
Match: KAB2008569.1 (hypothetical protein ES319_D10G107800v1 [Gossypium barbadense])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. NCBI nr
Match: TYG49702.1 (hypothetical protein ES288_D10G115300v1 [Gossypium darwinii] >TYI60577.1 hypothetical protein E1A91_D10G113000v1 [Gossypium mustelinum])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. NCBI nr
Match: KAG4187127.1 (hypothetical protein ERO13_A08G086086v2 [Gossypium hirsutum] >TYH05667.1 hypothetical protein ES288_A08G100200v1 [Gossypium darwinii])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 37 YSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +SLAFT+WLCSN  CKDL+FGFD QWRTTF AIAWKILV
Sbjct: 27 HSLAFTNWLCSNDFCKDLKFGFDRQWRTTFYAIAWKILV 65

[Close]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL
Match: A0A0D2NAD0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLCSNA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

[Close]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL
Match: A0A5J5PPL4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G107800v1 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL
Match: A0A5D2B2B4 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G115300v1 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL
Match: A0A5D2T5R8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G113000v1 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLC+N  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL
Match: A0A5D2PDF1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G101500v1 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 37 YSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +SLAFT+WLCSN  CKDL+FGFD QWRTTF AIAWKILV
Sbjct: 27 HSLAFTNWLCSNDFCKDLKFGFDRQWRTTFYAIAWKILV 65

The following BLAST results are available for this feature:

BLAST of Cla97C03G062370 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB09803.1	4.0e-12	74.47	hypothetical protein B456_001G167900 [Gossypium raimondii]	[more]
KAG4125508.1	3.8e-10	65.96	hypothetical protein ERO13_D10G099550v2 [Gossypium hirsutum]	[more]
KAB2008569.1	3.8e-10	65.96	hypothetical protein ES319_D10G107800v1 [Gossypium barbadense]	[more]
TYG49702.1	3.8e-10	65.96	hypothetical protein ES288_D10G115300v1 [Gossypium darwinii] >TYI60577.1 hypothe...	[more]
KAG4187127.1	1.9e-09	82.05	hypothetical protein ERO13_A08G086086v2 [Gossypium hirsutum] >TYH05667.1 hypothe...	[more]

BLAST of Cla97C03G062370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D2NAD0	1.9e-12	74.47	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 ...	[more]
A0A5J5PPL4	1.8e-10	65.96	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G107800v1 PE...	[more]
A0A5D2B2B4	1.8e-10	65.96	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G115300v1 PE=...	[more]
A0A5D2T5R8	1.8e-10	65.96	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G113000v1 P...	[more]
A0A5D2PDF1	9.0e-10	82.05	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G101500v1 P...	[more]

BLAST of Cla97C03G062370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G062370.1	Cla97C03G062370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane