Cla97C03G062270 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G062270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosomal protein l10
Location	Cla97Chr03: 23170861 .. 23171776 (-)
RNA-Seq Expression	Cla97C03G062270
Synteny	Cla97C03G062270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATTGTATTTGGCCGAAGAAGCACCTTTCTTTCATTTCTCGTAAAGAGCATTCATGAAAAGCGAGAAGTGTAACCTTTTTGGCTTAATCTATAAAAGATTAAGATAGCAAGACGAGGTCGCCAGATCCTCGGACTGAAGTTCATGATATTGCTTTCACATGGCGCTCAAATAAATTCACTCTAATGGACTTAGCTTGCTCGTGTAACAACTCTCTTCAAATAGGCTTGCTACCTTGATTTCTGACTTGAATATAGACCTTTGTCCTATTCTTTTATCGTAAACTTGGCTATTGCCATATACCTCCTCCTTCGGGTAGTCATGAAGAACGAGGAATTCCTCCTTATGGTATCGTATTCTCCCATTCACGCCTTTGTTATATGTTCTAATGGAATTTCCTTTCGTAGGCTCAAAAACGGGTCGGTCATTCTTCAGATCTTTGTTGATTGGCCGGCTGATATGGGATAACCTATTTGAAACAAAGAGATTTGTGTAACGGCTTGGTGTACCGAACTTGGCTTATACATTCTCGTACTATACTGCATCCGCCAGCCGAACAAGTAAGGGATTCCTCGCCCGGTGTGCTGGCTTGGCTCCTGCTTTGGCTTCTTGATTGGCTATTGCCAGAGAAGACATCTATGTTATACCAGCAGACGGAGCAGACATGGCAATCAAAAGAATGA

mRNA sequence

ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGCCGAACAAGTAAGGGATTCCTCGCCCGGTGTGCTGGCTTGGCTCCTGCTTTGGCTTCTTGATTGGCTATTGCCAGAGAAGACATCTATGTTATACCAGCAGACGGAGCAGACATGGCAATCAAAAGAATGA

Coding sequence (CDS)

ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGCCGAACAAGTAAGGGATTCCTCGCCCGGTGTGCTGGCTTGGCTCCTGCTTTGGCTTCTTGATTGGCTATTGCCAGAGAAGACATCTATGTTATACCAGCAGACGGAGCAGACATGGCAATCAAAAGAATGA

Protein sequence

MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCETGKKKRFFAQLAHSAAEQVRDSSPGVLAWLLLWLLDWLLPEKTSMLYQQTEQTWQSKE

Homology

[Close]

BLAST of Cla97C03G062270 vs. NCBI nr
Match: KAF5196613.1 (Ribosomal protein l10 [Thalictrum thalictroides])

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-35
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEI+ISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC T
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEIIISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCGT 60

Query: 61 GKKKRFFAQLAHSA--------AEQVRDSSPGVLAW 89
          GKKKRFFAQLAHSA        AE+  D  P + +W
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRFPFLPSW 96

[Close]

BLAST of Cla97C03G062270 vs. NCBI nr
Match: KAG6621690.1 (hypothetical protein I3842_Q010600 [Carya illinoinensis])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. NCBI nr
Match: YP_009913631.1 (ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luffa acutangula])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. NCBI nr
Match: QEX95855.1 (ribosomal protein L10 [Cercis canadensis])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. NCBI nr
Match: YP_009241685.1 (ribosomal protein L10 [Ziziphus jujuba] >AMP43670.1 ribosomal protein L10 [Ziziphus jujuba])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL
Match: A0A7J6WI28 (Ribosomal protein l10 OS=Thalictrum thalictroides OX=46969 GN=FRX31_013801 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-35
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEI+ISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC T
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEIIISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCGT 60

Query: 61 GKKKRFFAQLAHSA--------AEQVRDSSPGVLAW 89
          GKKKRFFAQLAHSA        AE+  D  P + +W
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRFPFLPSW 96

[Close]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL
Match: A0A142BZ26 (Ribosomal protein L10 OS=Ziziphus jujuba OX=326968 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL
Match: A0A7D5Y0N6 (Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL
Match: A0A5J6NGS1 (Ribosomal protein L10 OS=Cercis canadensis OX=49801 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 61 GKKKRFFAQLAHSA 74

[Close]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL
Match: A0A2P6P152 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_MTg0499041 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.4e-35
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
          MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC+T
Sbjct: 21 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCQT 80

Query: 61 GKKKRFFAQLAHSA 75
          GKKKRFFAQLAHSA
Sbjct: 81 GKKKRFFAQLAHSA 94

The following BLAST results are available for this feature:

BLAST of Cla97C03G062270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5196613.1	5.3e-35	80.21	Ribosomal protein l10 [Thalictrum thalictroides]	[more]
KAG6621690.1	6.9e-35	100.00	hypothetical protein I3842_Q010600 [Carya illinoinensis]	[more]
YP_009913631.1	6.9e-35	100.00	ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luff...	[more]
QEX95855.1	6.9e-35	100.00	ribosomal protein L10 [Cercis canadensis]	[more]
YP_009241685.1	6.9e-35	100.00	ribosomal protein L10 [Ziziphus jujuba] >AMP43670.1 ribosomal protein L10 [Zizip...	[more]

BLAST of Cla97C03G062270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6WI28	2.6e-35	80.21	Ribosomal protein l10 OS=Thalictrum thalictroides OX=46969 GN=FRX31_013801 PE=4 ...	[more]
A0A142BZ26	3.3e-35	100.00	Ribosomal protein L10 OS=Ziziphus jujuba OX=326968 GN=rpl10 PE=4 SV=1	[more]
A0A7D5Y0N6	3.3e-35	100.00	Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1	[more]
A0A5J6NGS1	3.3e-35	100.00	Ribosomal protein L10 OS=Cercis canadensis OX=49801 GN=rpl10 PE=4 SV=1	[more]
A0A2P6P152	7.4e-35	98.65	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_MTg0499041 PE=4 S...	[more]

BLAST of Cla97C03G062270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G062270.1	Cla97C03G062270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome