Cla97C03G061710 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G061710
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosomal protein L2
Location	Cla97Chr03: 20266009 .. 20266438 (+)
RNA-Seq Expression	Cla97C03G061710
Synteny	Cla97C03G061710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCAGGTCTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAATAATGAAGGAACCAGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATTCCCGATGCCGAGCTACTAAAGGAGGTAGACCTTGATAGATTAATGAGCATGCAGCAGAAGTTAATTTGATCAATTTTCACTCTAAGATGCTCAATTTAGAGGATTAAACATGCAATTAAGAAGAAAAAACAAAGTTTCAAGAACACTTACCCTTGAAGCTCCAAATTCTCCTTCAGTTCTTGATGAATTTCAGCACCACTTGGTTGTAGACCACCACAAGAGTCTTCTCTACTATTCTCTAGGCTTAGATTGGATGGTGGGATCCAAATTTGTGGTGAATTTGAGAAAGAATGA

mRNA sequence

ATGTCATCCAGGTCTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAATAATGAAGGAACCAGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATTCCCGATGCCGAGCTACTAAAGGAGCACCACTTGGTTGTAGACCACCACAAGAGTCTTCTCTACTATTCTCTAGGCTTAGATTGGATGGTGGGATCCAAATTTGTGGTGAATTTGAGAAAGAATGA

Coding sequence (CDS)

ATGTCATCCAGGTCTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAATAATGAAGGAACCAGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATTCCCGATGCCGAGCTACTAAAGGAGCACCACTTGGTTGTAGACCACCACAAGAGTCTTCTCTACTATTCTCTAGGCTTAGATTGGATGGTGGGATCCAAATTTGTGGTGAATTTGAGAAAGAATGA

Protein sequence

MSSRSQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKGAPLGCRPPQESSLLFSRLRLDGGIQICGEFEKE

Homology

[Close]

BLAST of Cla97C03G061710 vs. NCBI nr
Match: WP_165001736.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 5  SQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
          S+SAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRATKG
Sbjct: 51 SKSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKVIDSRCRATKG 99

[Close]

BLAST of Cla97C03G061710 vs. NCBI nr
Match: KAE9452443.1 (hypothetical protein C3L33_15655, partial [Rhododendron williamsianum])

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 4   RSQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           + Q AKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRAT G
Sbjct: 56  KGQGAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKVIDSRCRATIG 105

[Close]

BLAST of Cla97C03G061710 vs. NCBI nr
Match: KAF7117261.1 (hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRAT G
Sbjct: 63  QGAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKVIDSRCRATIG 110

[Close]

BLAST of Cla97C03G061710 vs. NCBI nr
Match: PLC31979.1 (50S ribosomal protein L2, partial [Lacticaseibacillus rhamnosus])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 6  QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
          Q AK ARAAGTFAKIMKEPAPPTLSLRLVR PSGVEKL+DSRCRAT G
Sbjct: 16 QGAKPARAAGTFAKIMKEPAPPTLSLRLVRPPSGVEKLMDSRCRATIG 63

[Close]

BLAST of Cla97C03G061710 vs. NCBI nr
Match: KAG9438886.1 (hypothetical protein H6P81_021184 [Aristolochia fimbriata])

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Sbjct: 91  QGAKLARAAGTFAKIMKEPAPQC----LVRLPSGVEKLIDSRCRATIG 134

[Close]

BLAST of Cla97C03G061710 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Sbjct: 384 QGAKLARAAGTYAKIIKEPA----SQCLVRLPSGVEKLIDSRCRATIG 427

[Close]

BLAST of Cla97C03G061710 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Sbjct: 384 QGAKLARAAGTYAKIIKEPA----SQCLVRLPSGVEKLIDSRCRATIG 427

[Close]

BLAST of Cla97C03G061710 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Sbjct: 384 QGAKLARAAGTYAKIIKEPA----SQCLVRLPSGVEKLIDSRCRATIG 427

[Close]

BLAST of Cla97C03G061710 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMK--EPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKL RAAGTFA+I++  E  P      +VRLPSGV+KLIDSRCRAT G
Sbjct: 383 QGAKLTRAAGTFAQIIQKVENTPQC----IVRLPSGVDKLIDSRCRATIG 428

[Close]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL
Match: A0A6A4KY61 (Ribosomal_L2_C domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_15655 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 4   RSQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           + Q AKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRAT G
Sbjct: 56  KGQGAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKVIDSRCRATIG 105

[Close]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL
Match: A0A5C7GQ80 (Ribosomal_L2_C domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027807 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 8   AKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           AKLARAAGTFAKIMKEPAPP LSLRLVRLPSGVEK+IDSRCRAT G
Sbjct: 103 AKLARAAGTFAKIMKEPAPPKLSLRLVRLPSGVEKVIDSRCRATIG 148

[Close]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL
Match: A0A443NYW5 (Ribosomal protein L2 mitochondrion OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01249600 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Sbjct: 91  QGAKLARAAGTFAKIMKEPAPQC----LVRLPSGVEKLIDSRCRATIG 134

[Close]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL
Match: M9WBC2 (Ribosomal protein L2 OS=Liriodendron tulipifera OX=3415 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Sbjct: 436 QGAKLARAAGTFAKIMKEPAPQC----LVRLPSGVEKLIDSRCRATIG 479

[Close]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL
Match: B5LYN7 (Ribosomal protein L2 (Fragment) OS=Eschscholzia californica OX=3467 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Sbjct: 79  QGAKLARAAGTFAKIMKEPAPQC----LVRLPSGVEKLIDSRCRATIG 122

[Close]

BLAST of Cla97C03G061710 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AK+ RAAGT AKI+KEPA       L++LPSG  K I+++CRAT G
Sbjct: 83  QGAKMVRAAGTNAKILKEPAKGKC---LIKLPSGDTKWINAKCRATIG 127

[Close]

BLAST of Cla97C03G061710 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 6   QSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG 54
           Q AK+ RAAGT AKI+KEPA       L++LPSG  K I+++CRAT G
Sbjct: 83  QGAKMVRAAGTNAKILKEPAKGKC---LIKLPSGDTKWINAKCRATIG 127

The following BLAST results are available for this feature:

BLAST of Cla97C03G061710 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_165001736.1	2.0e-15	95.92	hypothetical protein [Candidatus Frankia datiscae]	[more]
KAE9452443.1	2.9e-14	90.00	hypothetical protein C3L33_15655, partial [Rhododendron williamsianum]	[more]
KAF7117261.1	3.8e-14	93.75	hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii]	[more]
PLC31979.1	1.6e-12	89.58	50S ribosomal protein L2, partial [Lacticaseibacillus rhamnosus]	[more]
KAG9438886.1	3.7e-09	83.33	hypothetical protein H6P81_021184 [Aristolochia fimbriata]	[more]

BLAST of Cla97C03G061710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8K6	1.2e-10	79.17	60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=...	[more]
Q2F969	1.2e-10	79.17	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G...	[more]
P92812	1.2e-10	79.17	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
P26859	1.3e-06	64.00	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2...	[more]

BLAST of Cla97C03G061710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4KY61	1.4e-14	90.00	Ribosomal_L2_C domain-containing protein (Fragment) OS=Rhododendron williamsianu...	[more]
A0A5C7GQ80	3.4e-13	93.48	Ribosomal_L2_C domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_...	[more]
A0A443NYW5	1.8e-09	83.33	Ribosomal protein L2 mitochondrion OS=Cinnamomum micranthum f. kanehirae OX=3374...	[more]
M9WBC2	1.8e-09	83.33	Ribosomal protein L2 OS=Liriodendron tulipifera OX=3415 GN=rpl2 PE=3 SV=1	[more]
B5LYN7	1.8e-09	83.33	Ribosomal protein L2 (Fragment) OS=Eschscholzia californica OX=3467 GN=rpl2 PE=4...	[more]

BLAST of Cla97C03G061710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44065.1	4.0e-06	56.25	Ribosomal protein L2 family	[more]
AT2G44065.2	4.0e-06	56.25	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 5..54 e-value: 1.0E-8 score: 35.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 2..54 e-value: 2.8E-9 score: 38.6
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 3..53
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 3..53
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 5..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G061710.1	Cla97C03G061710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome