Cla97C03G060800 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G060800
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr03: 14652543 .. 14653022 (-)
RNA-Seq Expression	Cla97C03G060800
Synteny	Cla97C03G060800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACACACAACCAACATGATCCCATTGACGATGACAATCAAAATGGCGATGATCACGGTCGTCATGAGGAGGATCCTACCACCATATCCACCATCGATCCCACCACCGAGCCCACCATCAAGCAGACCATTAAGCCCACCACCACCACCACCATTAAGCTTCCTACTACCATCCCTACCACCGAGATTCCTACCACCACCACCACCAAGCTTCCCACCACCACTGAGCTTCATACTACCACCATCGATCCCACCACCACCTCTGATCTACCTATCACCACCACCGAGCTACCTATCATCACCATAGAGCCTACCACCACCACTACCACCATTACTACCATTGATCGTACCGTTATAGTACTTGATCATCCCAAGCTACTCCCACTTCCACCTCTAGCAAAAAGATTGAAGGTCAAGAATGAGAACGATGCATCACAATTGAAGAAGTCGATGATTATTGGTGAACCTAAGCTATGA

mRNA sequence

ATGACAACACACAACCAACATGATCCCATTGACGATGACAATCAAAATGGCGATGATCACGGTCGTCATGAGGAGGATCCTACCACCATATCCACCATCGATCCCACCACCGAGCCCACCATCAAGCAGACCATTAAGCCCACCACCACCACCACCATTAAGCTTCCTACTACCATCCCTACCACCGAGATTCCTACCACCACCACCACCAAGCTTCCCACCACCACTGAGCTTCATACTACCACCATCGATCCCACCACCACCTCTGATCTACCTATCACCACCACCGAGCTACCTATCATCACCATAGAGCCTACCACCACCACTACCACCATTACTACCATTGATCGTACCGTTATAGTACTTGATCATCCCAAGCTACTCCCACTTCCACCTCTAGCAAAAAGATTGAAGGTCAAGAATGAGAACGATGCATCACAATTGAAGAAGTCGATGATTATTGGTGAACCTAAGCTATGA

Coding sequence (CDS)

ATGACAACACACAACCAACATGATCCCATTGACGATGACAATCAAAATGGCGATGATCACGGTCGTCATGAGGAGGATCCTACCACCATATCCACCATCGATCCCACCACCGAGCCCACCATCAAGCAGACCATTAAGCCCACCACCACCACCACCATTAAGCTTCCTACTACCATCCCTACCACCGAGATTCCTACCACCACCACCACCAAGCTTCCCACCACCACTGAGCTTCATACTACCACCATCGATCCCACCACCACCTCTGATCTACCTATCACCACCACCGAGCTACCTATCATCACCATAGAGCCTACCACCACCACTACCACCATTACTACCATTGATCGTACCGTTATAGTACTTGATCATCCCAAGCTACTCCCACTTCCACCTCTAGCAAAAAGATTGAAGGTCAAGAATGAGAACGATGCATCACAATTGAAGAAGTCGATGATTATTGGTGAACCTAAGCTATGA

Protein sequence

MTTHNQHDPIDDDNQNGDDHGRHEEDPTTISTIDPTTEPTIKQTIKPTTTTTIKLPTTIPTTEIPTTTTTKLPTTTELHTTTIDPTTTSDLPITTTELPIITIEPTTTTTTITTIDRTVIVLDHPKLLPLPPLAKRLKVKNENDASQLKKSMIIGEPKL

Homology

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BLAST of Cla97C03G060800 vs. ExPASy TrEMBL
Match: A0A421AW08 (Uncharacterized protein OS=Actinokineospora cianjurensis OX=585224 GN=CLV68_6095 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 28  TTISTIDPTTEPTIKQTIKPTTTTTIKLPTTIPTTEIPTTTTTKL-PTTT--ELHTTTID 87
           TT +T+ PTT  T   T+ PTTTTT   PTT  TT  PTTTTT + PTTT  E  TTT++
Sbjct: 176 TTTTTVPPTTTTTTTTTVPPTTTTTTVEPTTTTTTVAPTTTTTTVEPTTTTVEPTTTTVE 235

Query: 88  PTTTSDLPITTTELP--IITIEPTTTTTTITTIDRT 119
           PTTT+  P TTT +P    TIEPTTTTTT+     T
Sbjct: 236 PTTTTVEPTTTTVVPTTTTTIEPTTTTTTVAPTTTT 271

The following BLAST results are available for this feature:

BLAST of Cla97C03G060800 vs.


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060800 vs.


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A421AW08	9.2e-04	55.21	Uncharacterized protein OS=Actinokineospora cianjurensis OX=585224 GN=CLV68_6095...	[more]

BLAST of Cla97C03G060800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G060800.1	Cla97C03G060800.1	mRNA