Cla97C03G060645 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G060645
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase
Location	Cla97Chr03: 12554406 .. 12560463 (+)
RNA-Seq Expression	Cla97C03G060645
Synteny	Cla97C03G060645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAAGGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATATGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACTTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACAGGTATGCTTATTATTTGCTCTAAAACTGCACATGTGTTAATAGATTCAAGGGCTACCCACTCATTTGTGTCTTGTAAATTTTCTGTGCATATAAATAGAAGATTAGAACCTTTGCCTGAAGCATTGCTAGTATGTACCCCTACTGGGGAAACCATTGTTATAGAACATGCTTATTTTGAGTGTGAAATTGTGATTGACGGTGTGATATGGTTGACTGATTTATTACCTCTAGTATTATTGGAGTTTGATGTAATTCTTGGCATGGATTTTTTTATCAAAATACCATGCGAAAGTTGATTACTTCAAGAAGGAAGTGTGGTTGACAAAGTCCGATGGGGTTGAGGTGGTGTTTAAAGGAAGGAGGCGGATTCTTCCTACTTGTGTAATTTCTGCAGTAAAAGCCAGAAAGTTATTGAGTAAAGGCTGTGAAGCATATTTAGCTTATGTAATAGAAGTTTCTCGTCTGGGCCTACTTCGGAGCAGACCTCTGGGATAGTTGTAAATACTCAGTTTATGTCCATGTTTTGTGATGTACTTGTTCCATGGGAGTGTTGGGAGGATCGTTTTGTATTACATATATATATAGAACACTTGTTGATAGGTTGTTATATTATCGCATGGCCTAATAGTAAAAGTGCTTTTATTTGAGATTAAGCTGGCATTTAGTTGAATATTGAAGATCTGTATATGATTTATGCGTTAGAGATGGACTAGGGAGAGTGCGGTTTCACACTCACTCCTAGGGATAAGGAATATCTGGGAGGGGGTGTGACACTAATGCTCAGGGACTCGTAGAAGGCATTGAGGGCGGCCCCAATTCTAGTACCTATGTGCACATAGAGGTATATACGACGCTAATGTGTTGAGATTACTCCACACAGCTAAGGAAAATCGACGTTGAGGAGCGTTGAGCATTGCTCCGCCTCAACTAGGGAAAAAGTATTTTGAATGAACGAGATTGTGATTATTTGTTCCAAACAGATATGTATACATGATAAACAATGATTTGATCAGTTTTACTGTTAAAGTAACATATTTTCAGAAAAACTGTTACTCATTGAGCTATAGCTCACCCTTTTATATGTTTTCCATTTTCAGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGTGTCTTAATGGTATTATCGTCCTAGGAAGGGTTTATTTGTATGTTTGGCGAATTTGACAGTACGTTATGTGACAGGGTAGTCGGTAACTGCTGTCCTCACACTCCGTCTCGGGCTACGGGAAGATAGTTCGGGGTGGGGTGTGACAGTTTTGAAGCAAGAAAAGTGTCACTCACAACTCTTTCTAGGCTTTGAGTGGATTATACGCCTTCCCTATCTCCGCTTGGCCTGAAATAAACATATTTCCTTATTATTCTTCTTTTCCATTCACTTTAACATAAACAACAACTAAACATATGCACAATGTCTTTAATTTCATCATGCGGCTAGGTTTCCGCTGGTTCATTCTCAAGCTTTAAACACTAATGCTATTGCTACAAAGCTGCTCCTTAACCTTTTTGTTATACCTTGATTTCAAGAAGAATTTGTGTGCAACGCAAACTCTCTGCAACACAAACGTTTCTAGCTTACTTTCCTCCTTAACAAAGCTGACTGCTGCAGCTTCGGTTCTTCTTATTCACCCCTGCTAAAAACACATTTCCAGTCCAAACTAAGATTTCTTCCCTTCTACAAACTTGTAAAGAATTGAGTTTCACAGATTACCTCAAAATTTCAAGGCTTAACTCCCCTTCGTTCTCTAGTTATTCTAAAATCACTCCGCGTTGCTCCAGATTGCACAACAATTCTGTAACCGTTGCTTTTACCTAAAAATTCACATAATTAACTTCAATTCCAGCTTTACTGTAACACCCCTATCCTAGATATATGTATATACCTATATCTTTACCTAGGAGTGAGTGTTACCTATTCTGCATTCTGCTAACACTGTTATATACACATTTATATATCATAACCTGCTGGCAATTGGCTTAGCTTTTACAATAGTTATGTAAAAATTTACTGATAGGATAGCAGCATGAGTAAGATTTAAGAGGCTATATTTAATATTTACAAGTATGCCTGGTGATCCTCACTATGCCACTCAAAATAAGTACAATTTCTACATAGGGATGGGGTTTACAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGTGAGTGACTATCTAAAGTATAAACTCAATAAAGCATTGTAACACCCTGTCCCCGAAAACCTAAGTATTCACATAATTAGTAAGGATAAAAGGATAAAAGTGTGTGGATTAGCGGAATTTTTAAATGAAAAGTTAAGATTGTGAAACTATTGAATTATGGCCAATAAATTCCGTACGTTGGGATGAATGGTATTAAAAAAAAAGAGTAGAAATATTTCTGGAGATAAGGTTGATGCATAGATGGTTAAGCTCAAACGCATGGTATTTAATACTGAGGAGTTACCAAGTTGTGAAATTAGGTTCTAATGATGGCAAGTGTATGGGGTGAAGTACCATGAGTCGATGATGCAAAATATAGAACCATCACGTAGGAAAAATACCTTGCGGTGGAATGGTTGACAACGCGTCGAGGGGTGAAGCTAAGAAAAGTAATGCATTGAGTATTGTATAGAGCAATAGTAAATTGAGGTGAAGGAACAAGAATTGAGTATGGATTATGGCTATGCGTTGGTAAGCCTTATATGGGAAGCTAGTGTAAAGAGAAAAAAGTAGACCATTACCATAGCCTTGATAGATGAGTCGTTATTTTGATAGGTATGTCAGACGTTGAAAGGTGTTATTATGTGTTCGGAGGTAAAGATGGAGTCTGACCAAGGGTTGTATTCAACTTACGCTACGTTGAGAAGAATGCCTTGAAATGGAGAGTAGTTGAATGCGATAGGCTAAGGATTAATAATTAATTGATAAGTCACAAAGTGGATAATAACTATGCGCTGAAGGTTTACTATAAAAGACCATAGTGCTGATCGGGAAGTTCTTTAGTGCAGCAAGTGCACAAGGGATCGCTAAGCGTTAAAGTGCTATGAAATGTTAAACGTTAAAGGATTATTATATGCTAGTAGGACTTCAGCGATTAGTAGGGTCTTACTATTCGTTGAGAAGTATGTGGTGAGAAAATATTGGTTATTTAGTCATACGCTGAAGAGCTTAATTTCATGATAATAGAAAATGTTATCACTATCTCCGGTAAATGCATAGGAAGAAGCTAAAGAAGGAAATGGTTAAGGAATAACCTTGGTATAAGATTCAAGGACGCATAGAGGGTAAAATCAAGGGACTTAAAGGGAGGTCATGAACGCGGAATGAAGCAAAGGTAAATGCAGGAGGGTAAACGCAGGAAGAAAGAATGTGAGTTGGATGTGGTAGTCAAAGGTAAACCACATGGTCAGAAGAGTGCAATTGTACAAAGGAGGAAATGTAGCTGTAAACGAATGTAAGAAAGGGAGCTGGAAGCATATAATATGCGAAGAAAATTGATGTATGATGTTAAGCTGAAGCGCATAGTAGTATGCGTTAGAATTTGTACACCTAAATAAAGGAGAAATGGAATAAAGGTAGTAAAGTCGAGGGTAGTAAAAGGAAGCAAAGGAGTTAAATCTAGAAGATAGTTCCATGAACGCATAGGAGCAAGGAGTTGGTTGTGTAGTTGTGTATTGGAACTTAATGAACCCATAAAGTAAGTCTATAGGCCAGGTGGTTACACATGATTGTGACACCTCATTAAGTAGGAGGTGTTAGAAAGCATGATAAACATTTCATGCAAAGTGACACAAGGACTAATGCATTATTAATTAAGCATGCAACATGACATGTGGCAAACAAGTAGCAGCACAAGAGAAGAGGTACAATGACAAGTACTCTATAAATAGGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGGTGAGCCTTGCGTTTAATCTGAATTCAACATAAAGAGTGAATGCCACGATGCGTTCAAGTTAGACCTTAAGTCCAAAGAAGGTCGACGCATCCGAAAGAGTAAAAAGAGCTAGTTTGCTGATGTGCCACTTTGTGTGTTTACCGCAAGTGTACGGGTCAAGTTATAATATAAAATGGTTAAGTCCGAGTATCGTTTCCACTAGAGATCCAATTGGGAAGGTTTAACTTACTTAGCTATTCTAGAATTGAATCAATTTTATTTGAGGATTGGAATTCAAATTTTGTTTTTGGGAAAAAGAAAAATCAAGCAAAGAAAATATCAAAGGGAGAATTGCAAGAGTCAAAGAGAATTCTAGGGTTTTGAATCCTTATTTGTTTCATCATGCAAAATTATAGATTTCATGGATTTTATTCTTATGCCTAAGTCTAGAAACTTAATTCCAAGTTATCTTCTCTCAAAGGCAACTCTTTCTCATGCAACTTAATTGATAGTTAATCTCTTAAAACCAATACAAAGATTACATGACATTAAAACTAGTCTTTAGCAACTTCCATTGTCAACCTAACTACTCTCGTGATAGATTAACAACGATTCATTGTTATAGATCAAATTAAACATATAATCTCTCGATCATACATCTAACCTAACATGTGAAGGTGGCCAATCTTCAAGAATTAAACACAATAACAATGAAAAGCATATTTATTTGAACAAAACATGAGTCTACAAAATTATCATGAATTCACAAACAATTCATCAAAAACTCTAAAACTAAAGAGTTTAGCCACTCATAGCGTGAAGCAACATATTGAGCAAAAAGAATCAAAGAAAGAGTGTAAAGAATAGGGAAACTCTACTGAAAAGAGGTTCTTGATTGAGGCAGCACCGTCACGAACTCCTTGGCTCTCGCGTCGGACTTCGAAGGGCACCAAAACTATCTCGAACTCTTTTCTTCTTCCTTGCGGCTAACTCACTCTTGGAACTCTAGCTTAATTCTCACCTTTTTGGATCTTTCTTTTGTTCTGCAACTTTTCTTAATTTTCTTGATATTTCTCCCCTCCTTTGGCTGCTGAAAACACCTCAATTTATAGAGTTTGGCCGCCCAAAATTTAACCTAAAATATAAAACTTGCGTTTAATTAACGCTGGCGCCGTGGCGCTAGCATTGCGAAAAAAAATAAGTTGCTCTCGGGTTTTAGCGCCGCGGCAGCGCCGTCACAGCGCTGCAATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

mRNA sequence

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAAGGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATATGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACTTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACAGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGGATGGGGTTTACAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGCGCCGCGGCAGCGCCGTCACAGCGCTGCAATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

Coding sequence (CDS)

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAAGGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATATGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACTTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACAGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGGATGGGGTTTACAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGCGCCGCGGCAGCGCCGTCACAGCGCTGCAATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

Protein sequence

MTPFCTRVSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSVPTERSQYNQPSEYVASSVRKPYCTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAGEGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTVPVADRSRGMGFTSSQVQNSNLAQTSLDGRLSTTNTLATWRENIRETRIYELQCSDLEEKVMTDDSVILILERRKERELKEENLAFEGGSLRPKRKTTLKLKSSDIKKLACVVKAPRQRRHSAAMLSCVHQGWVEAAPSQCRVATMRFCLALRRIMRFNKDAFFSSFLPYSCSVLIF

Homology

[Close]

BLAST of Cla97C03G060645 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-29
Identity = 81/162 (50.00%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E V+S+VR+  
Sbjct: 268 ISSRQDFKNRSEGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESVSSTVRRTP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW+QCFVG DV Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWDQCFVGADVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of Cla97C03G060645 vs. NCBI nr
Match: KAA0037886.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-26
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P Q +  T RSQ  Q  E VAS+VR+  
Sbjct: 209 ISSRQEFKNRSGGQASRNMSYGSVFQRQSQRMPSQPTRSTVRSQQGQ--ESVASTVRRTP 268

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           C SCG  H +QC VG  V Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 269 CMSCGRNHRDQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVLVVPT 328

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSGG+Q+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 329 EGTSGGKQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 368

[Close]

BLAST of Cla97C03G060645 vs. NCBI nr
Match: KAA0045363.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-26
Identity = 77/162 (47.53%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E +AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW QC VG    Y C QPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+ + GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGDVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of Cla97C03G060645 vs. NCBI nr
Match: KAA0035808.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 4.5e-26
Identity = 79/162 (48.77%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P Q    T RSQ  Q  E +AS+VR+  
Sbjct: 264 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPITSTVRSQPGQ--ESIASTVRRIP 323

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 324 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 383

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 384 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 423

[Close]

BLAST of Cla97C03G060645 vs. NCBI nr
Match: KAA0067811.1 (putative Gag-pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 5.9e-26
Identity = 78/162 (48.15%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E +AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQLK   + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QE E  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEVEDAPDVITGTILI 427

[Close]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-30
Identity = 81/162 (50.00%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E V+S+VR+  
Sbjct: 268 ISSRQDFKNRSEGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESVSSTVRRTP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW+QCFVG DV Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWDQCFVGADVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL
Match: A0A5D3BDU3 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00490 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-27
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P Q +  T RSQ  Q  E VAS+VR+  
Sbjct: 209 ISSRQEFKNRSGGQASRNMSYGSVFQRQSQRMPSQPTRSTVRSQQGQ--ESVASTVRRTP 268

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           C SCG  H +QC VG  V Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 269 CMSCGRNHRDQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVLVVPT 328

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSGG+Q+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 329 EGTSGGKQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 368

[Close]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL
Match: A0A5A7TP97 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001420 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-27
Identity = 77/162 (47.53%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E +AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW QC VG    Y C QPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+ + GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGDVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL
Match: A0A5A7SZ16 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00980 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-26
Identity = 79/162 (48.77%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P Q    T RSQ  Q  E +AS+VR+  
Sbjct: 264 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPITSTVRSQPGQ--ESIASTVRRIP 323

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQL    + +Q    QT  QSR  +   
Sbjct: 324 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 383

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 384 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 423

[Close]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL
Match: A0A5A7VQD2 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00150 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-26
Identity = 78/162 (48.15%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 8   VSSKGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSEYVASSVRKPY 67
           +SS+  FK RS G      S     QR   R P   +  T RSQ  Q  E +AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQLKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQLK   + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QE E  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEVEDAPDVITGTILI 427

The following BLAST results are available for this feature:

BLAST of Cla97C03G060645 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	1.5e-29	50.00	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0037886.1	1.2e-26	48.77	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag...	[more]
KAA0045363.1	1.2e-26	47.53	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035808.1	4.5e-26	48.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0067811.1	5.9e-26	48.15	putative Gag-pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C03G060645 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	7.3e-30	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDU3	5.8e-27	48.77	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TP97	5.8e-27	47.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7SZ16	2.2e-26	48.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]
A0A5A7VQD2	2.9e-26	48.15	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Cla97C03G060645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 86..100 e-value: 0.0033 score: 26.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 86..100 e-value: 3.2E-7 score: 30.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 86..100 score: 9.834029
None	No IPR available	GENE3D	4.10.60.10		coord: 83..148 e-value: 8.2E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..143
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 81..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G060645.1	Cla97C03G060645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding