Cla97C03G060643 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G060643
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase
Location	Cla97Chr03: 12553730 .. 12554257 (+)
RNA-Seq Expression	Cla97C03G060643
Synteny	Cla97C03G060643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGTGGGCTCCTTAACATGGGCAGATTTTAAGAAATCATTCCAGGAGAAGTACTATCCTAAATCCTTTTGTGAAGAGAAAAGGAAGGAATTCTTAAATTTAGTATAGGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGTTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

mRNA sequence

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGTTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

Coding sequence (CDS)

ATGGAAGAACAACTTTTTAGCAGAATTGCACAGAGACTAGTAACCAGTATGGAAACAGTTCAGGGAGACCTTGAGAAAAAGTTTGGTATAGAACGGTTTAAAGCGCTGGGTGCTCAAGTGTTTGAAGGCACCACAAATCCTGCGGAAGCTGAAGCATGGTTAAATCAGGTAGAAAAATGTTTTAGAGTTATGCACTGTCCAGAAGACAGGAAACTTGACTTGGCCACGTTCATGCTCCAAAAAGGGGCTGAAGACTGGTGGCGATTGATAGAACACAGAAACACTGATGGAAGCATGTGTGTGGCGGAATATGAGAAGAAATTTACGGAGTTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCAGTGA

Protein sequence

MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRNTDGSMCVAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRTQ

Homology

[Close]

BLAST of Cla97C03G060643 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 7.0e-42
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTEFAKYALALI 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E  R T G+M VAEYEKK+TE +KYA  +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160

Query: 121 AEEADKCKRFEEGLRSEIRT 140
            +E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180

[Close]

BLAST of Cla97C03G060643 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           MEEQL  R+AQRL++ + + Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKC
Sbjct: 60  MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119

Query: 61  FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTEFA 120
           FRV  CPEDRK++LA+F+LQ G     EDWWR+ E R    +   SM V +YEKK+TE +
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179

Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
           KYA  +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206

[Close]

BLAST of Cla97C03G060643 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-38
Identity = 87/174 (50.00%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +E+ +F RI QRL  S+  V+ +LEKK+ IERFKALGA  FEGTT+P EAE WL+ VEKC
Sbjct: 17  LEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGTTDPTEAELWLDVVEKC 76

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           F VM CPEDRK+ LATF+LQK AE WW++I  R                           
Sbjct: 77  FNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPEFKKAIKDKYCPSSFRD 136

Query: 121 ---------TDGSMCVAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M V EYE+KFTE ++YAL +IAEE D+C++FE+GLR EI+T
Sbjct: 137 AKRDEFLRLTQGTMSVVEYEQKFTELSQYALPIIAEEKDRCRKFEQGLRKEIKT 190

[Close]

BLAST of Cla97C03G060643 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38
Identity = 86/174 (49.43%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E R                           
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160

Query: 121 ---------TDGSMCVAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M VAEYEKK+TE +KYA  +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214

[Close]

BLAST of Cla97C03G060643 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-37
Identity = 83/159 (52.20%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKCFRV  CPEDRK++LA
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 136 VAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
           +AEYEKK+TE + YA  +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202

[Close]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.4e-42
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIE-HRNTDGSMCVAEYEKKFTEFAKYALALI 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E  R T G+M VAEYEKK+TE +KYA  +I
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVI 160

Query: 121 AEEADKCKRFEEGLRSEIRT 140
            +E ++CKRFEEGLR EIRT
Sbjct: 161 VDEGERCKRFEEGLREEIRT 180

[Close]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           MEEQL  R+AQRL++ + + Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKC
Sbjct: 60  MEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKC 119

Query: 61  FRVMHCPEDRKLDLATFMLQKG----AEDWWRLIEHR----NTDGSMCVAEYEKKFTEFA 120
           FRV  CPEDRK++LA+F+LQ G     EDWWR+ E R    +   SM V +YEKK+TE +
Sbjct: 120 FRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELS 179

Query: 121 KYALALIAEEADKCKRFEEGLRSEIRT 140
           KYA  +I +E ++CKRFEEGL+ EIRT
Sbjct: 180 KYATRVIEDEVERCKRFEEGLQEEIRT 206

[Close]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 86/174 (49.43%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 1   MEEQLFSRIAQRLVTSMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKC 60
           +EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTTNP + EAWL  +EKC
Sbjct: 41  VEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKC 100

Query: 61  FRVMHCPEDRKLDLATFMLQKGAEDWWRLIEHRN-------------------------- 120
           FRV    EDRK++LA F+LQ  AEDWWR+ E R                           
Sbjct: 101 FRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRD 160

Query: 121 ---------TDGSMCVAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
                    T G+M VAEYEKK+TE +KYA  +I +E ++CKRFEEGLR EIRT
Sbjct: 161 AKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRT 214

[Close]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.3e-37
Identity = 83/159 (52.20%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D EKK+GIER KALGA  F GTTNPA+AEAWL  +EKCFRV  CPEDRK++LA
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 136 VAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
           +AEYEKK+TE + YA  +I +E ++CKRFEEGLR EIRT
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRT 202

[Close]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.3e-35
Identity = 81/159 (50.94%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 16  SMETVQGDLEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQVEKCFRVMHCPEDRKLDLA 75
           S E+ Q D +KK+GIER KALGA  F GTTNP + EAWL  +EKCFRV  CPEDRK++LA
Sbjct: 138 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 197

Query: 76  TFMLQKGAEDWWRLIEHRN-----------------------------------TDGSMC 135
            F+LQ GAEDWWR+ E R                                    T GSM 
Sbjct: 198 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 257

Query: 136 VAEYEKKFTEFAKYALALIAEEADKCKRFEEGLRSEIRT 140
           VAEYEKK+TE +KYA  +I +E ++ KRFEEGLR EIRT
Sbjct: 258 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRT 296

The following BLAST results are available for this feature:

BLAST of Cla97C03G060643 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036813.1	7.0e-42	61.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035225.1	2.6e-41	59.18	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
XP_038890030.1	1.6e-38	50.00	uncharacterized protein LOC120079741 [Benincasa hispida]	[more]
TYJ95881.1	6.1e-38	49.43	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0060484.1	6.7e-37	52.20	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]

BLAST of Cla97C03G060643 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1M0	3.4e-42	61.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3DES5	1.3e-41	59.18	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	3.0e-38	49.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UZM6	3.3e-37	52.20	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TBS0	2.3e-35	50.94	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Cla97C03G060643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 48..139
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 48..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G060643.1	Cla97C03G060643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding