Cla97C03G060580 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G060580
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	C2H2-type domain-containing protein
Location	Cla97Chr03: 12012327 .. 12013024 (+)
RNA-Seq Expression	Cla97C03G060580
Synteny	Cla97C03G060580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGCTAGACAGGCAGGTACTTAAACTTACGGTCCTTCCTATCTCTGAAACTTCAATGAATTATTAATTTAAGGTCTAAAGCTTATTTTCCTATTGCCTACTTTTTTAGCATCTGAACTTGGTCTTGAAGACACAGGCAAGAACATGGTGGAAATCATATTCCAGTCAAGCTGGCTGAAAAAGCAAAGCCAACTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTTGAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCCCGTTGCTGTGCAGCATGCAACGAACTCTTAAGGTTCCACTGCACCACCCTGGGCTGTTCATTGGGTCTAAATGGCTCTTCCAACCTCTGCAGTTCAATTCCACAATGCAATGTCTGTAGCAATTAAGAATGGGTTCAAGGTGGTTGTAGAAACTGTAGGGGCCGCTGGAAAGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCACGATTGTGCTGGAGTATCATCGAATGGCCACGACAAACGAGCAATGCTGGTTTGCCAGGTAAATAGCTGGGAGGCTGAAGAAGAGTTCAGAAGACAGCATGGAGGATTACGATTCATTGGCCGGAGCAGCAGGCATGTCTTCCAATTTGGATGA

mRNA sequence

ATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGCTAGACAGGCAGTCAAGCTGGCTGAAAAAGCAAAGCCAACTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTTGAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCCCGTTGCTGTGCAGCATGCAACGAACTCTTAAGGGGCCGCTGGAAAGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCACGATTGTGCTGGAGTATCATCGAATGGCCACGACAAACGAGCAATGCTGGTTTGCCAGGTAAATAGCTGGGAGGCTGAAGAAGAGTTCAGAAGACAGCATGGAGGATTACGATTCATTGGCCGGAGCAGCAGGCATGTCTTCCAATTTGGATGA

Coding sequence (CDS)

ATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGCTAGACAGGCAGTCAAGCTGGCTGAAAAAGCAAAGCCAACTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTTGAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCCCGTTGCTGTGCAGCATGCAACGAACTCTTAAGGGGCCGCTGGAAAGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCACGATTGTGCTGGAGTATCATCGAATGGCCACGACAAACGAGCAATGCTGGTTTGCCAGGTAAATAGCTGGGAGGCTGAAGAAGAGTTCAGAAGACAGCATGGAGGATTACGATTCATTGGCCGGAGCAGCAGGCATGTCTTCCAATTTGGATGA

Protein sequence

MKAETLELHQSARQAVKLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLRGRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQVNSWEAEEEFRRQHGGLRFIGRSSRHVFQFG

Homology

[Close]

BLAST of Cla97C03G060580 vs. NCBI nr
Match: XP_022141510.1 (uncharacterized protein LOC111011869 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-28
Identity = 87/169 (51.48%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MKAETLELHQS R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 208 MKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 267

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKK+PRC A  NELLR                           
Sbjct: 268 SKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCNSIPQCNV 327

[Close]

BLAST of Cla97C03G060580 vs. NCBI nr
Match: XP_038874395.1 (uncharacterized protein LOC120067077 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-27
Identity = 89/174 (51.15%), Postives = 93/174 (53.45%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQS R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 206 MKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 265

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 266 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGLNGSSNLCSSIPQCNV 325

[Close]

BLAST of Cla97C03G060580 vs. NCBI nr
Match: XP_008465804.1 (PREDICTED: uncharacterized protein LOC103503399 [Cucumis melo] >KAA0047470.1 C2H2-like zinc finger protein [Cucumis melo var. makuwa] >TYJ98668.1 C2H2-like zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-26
Identity = 87/174 (50.00%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 203 MKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 262

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 263 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNV 322

[Close]

BLAST of Cla97C03G060580 vs. NCBI nr
Match: XP_022990074.1 (uncharacterized protein LOC111487079 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 7.0e-26
Identity = 85/173 (49.13%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MKAETLELHQS R AV                      +K  P CKIERILKVQNT KTI
Sbjct: 204 MKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPICKIERILKVQNTAKTI 263

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKA KL KK+PRC A  NELLR                           
Sbjct: 264 SKFEEYRDSIKAKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNV 323

[Close]

BLAST of Cla97C03G060580 vs. NCBI nr
Match: XP_004140330.1 (uncharacterized protein LOC101220433 [Cucumis sativus] >KGN50968.1 hypothetical protein Csa_008131 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 9.1e-26
Identity = 86/174 (49.43%), Postives = 92/174 (52.87%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 203 MKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 262

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 263 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNV 322

[Close]

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL
Match: A0A6J1CIA1 (uncharacterized protein LOC111011869 OS=Momordica charantia OX=3673 GN=LOC111011869 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 87/169 (51.48%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MKAETLELHQS R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 208 MKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 267

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKK+PRC A  NELLR                           
Sbjct: 268 SKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCNSIPQCNV 327

[Close]

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL
Match: A0A5A7TWE1 (C2H2-like zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00610 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 87/174 (50.00%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 203 MKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 262

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 263 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNV 322

[Close]

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL
Match: A0A1S3CQ33 (uncharacterized protein LOC103503399 OS=Cucumis melo OX=3656 GN=LOC103503399 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 87/174 (50.00%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 203 MKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 262

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 263 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNV 322

[Close]

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL
Match: A0A6J1JR26 (uncharacterized protein LOC111487079 OS=Cucurbita maxima OX=3661 GN=LOC111487079 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.4e-26
Identity = 85/173 (49.13%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MKAETLELHQS R AV                      +K  P CKIERILKVQNT KTI
Sbjct: 204 MKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPICKIERILKVQNTAKTI 263

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKA KL KK+PRC A  NELLR                           
Sbjct: 264 SKFEEYRDSIKAKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNV 323

[Close]

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL
Match: A0A0A0KN18 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G375760 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-26
Identity = 86/174 (49.43%), Postives = 92/174 (52.87%), Query Frame = 0


Query: 1   MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTI 60
           MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI
Sbjct: 203 MKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTI 262

Query: 61  LKFEEYRDSIKAKATKLPKKYPRCCAACNELLR--------------------------- 111
            KFEEYRDSIKAKATKLPKKYPRC A  NELLR                           
Sbjct: 263 SKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNV 322

[Close]

BLAST of Cla97C03G060580 vs. TAIR 10
Match: AT1G75710.1 (C2H2-like zinc finger protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-11
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 2   KAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTIL 61
           K E+LELHQ+ R AV                      +K  P C+IERILKV NT +TI 
Sbjct: 215 KLESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDSPICQIERILKVHNTQRTIQ 274

Query: 62  KFEEYRDSIKAKATKLPKKYPRCCAACNELLR 75
           +FE+ RD++KA+A +  +K  RC A  NELLR
Sbjct: 275 RFEDCRDAVKARALQATRKDARCAADGNELLR 306

[Close]

BLAST of Cla97C03G060580 vs. TAIR 10
Match: AT4G27240.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 27  KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR 75
           +I+RILKV N  KT+ +FEEYRD++K +A+KL KK+PRC A  NELLR
Sbjct: 251 RIDRILKVHNMQKTLARFEEYRDTVKIRASKLQKKHPRCIADGNELLR 298

[Close]

BLAST of Cla97C03G060580 vs. TAIR 10
Match: AT5G54630.1 (zinc finger protein-related )

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-10
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 21  KAKPTC-KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR 75
           K++  C +I+R+LKV N  KT+ +FEEYR+++K +A+KL KK+PRC A  NELLR
Sbjct: 279 KSENQCGRIDRVLKVHNMQKTLARFEEYRETVKIRASKLQKKHPRCLADGNELLR 333

[Close]

BLAST of Cla97C03G060580 vs. TAIR 10
Match: AT1G62520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits to 388 proteins in 26 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-06
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 27  KIERILKVQNTPKTILKFEEYRDSIKAKAT-KLPKKYPRCCAACNELLR----------- 86
           ++E I KVQN  KT+ +FEEYR+++KA++  K  ++  R  A  NE +R           
Sbjct: 129 RVEMIFKVQNGSKTLTRFEEYREAVKARSVGKAREENARSVADGNETMRFYCLGPSYGGG 188

Query: 87  ----------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV 111
                     G    I T A S  A++ AG    G  ++AMLVC+V
Sbjct: 189 GSAWGILGGKGGGASIYTFAGSSTANEKAG---GGKGRKAMLVCRV 231

[Close]

BLAST of Cla97C03G060580 vs. TAIR 10
Match: AT1G11490.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 28  IERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLRGRWKGILTTATSG 87
           I  I K+QN  + +  FE+YR+ +K +A KL KK+ RC A  NE L   + G   + T G
Sbjct: 185 ISAIFKIQNLQRVVADFEDYRELVKIRANKLSKKHSRCMADGNEFL--GFHGTTLSCTLG 244

Query: 88  KAHDCAGVSSNGH 101
            ++  + +  + H
Sbjct: 245 FSNSSSNLCFSDH 255

The following BLAST results are available for this feature:

BLAST of Cla97C03G060580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141510.1	3.4e-28	51.48	uncharacterized protein LOC111011869 [Momordica charantia]	[more]
XP_038874395.1	3.7e-27	51.15	uncharacterized protein LOC120067077 [Benincasa hispida]	[more]
XP_008465804.1	4.1e-26	50.00	PREDICTED: uncharacterized protein LOC103503399 [Cucumis melo] >KAA0047470.1 C2H...	[more]
XP_022990074.1	7.0e-26	49.13	uncharacterized protein LOC111487079 [Cucurbita maxima]	[more]
XP_004140330.1	9.1e-26	49.43	uncharacterized protein LOC101220433 [Cucumis sativus] >KGN50968.1 hypothetical ...	[more]

BLAST of Cla97C03G060580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIA1	1.6e-28	51.48	uncharacterized protein LOC111011869 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5A7TWE1	2.0e-26	50.00	C2H2-like zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CQ33	2.0e-26	50.00	uncharacterized protein LOC103503399 OS=Cucumis melo OX=3656 GN=LOC103503399 PE=...	[more]
A0A6J1JR26	3.4e-26	49.13	uncharacterized protein LOC111487079 OS=Cucurbita maxima OX=3661 GN=LOC111487079...	[more]
A0A0A0KN18	4.4e-26	49.43	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G375760 P...	[more]

BLAST of Cla97C03G060580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75710.1	5.2e-11	43.48	C2H2-like zinc finger protein	[more]
AT4G27240.1	8.8e-11	62.50	zinc finger (C2H2 type) family protein	[more]
AT5G54630.1	4.4e-10	54.55	zinc finger protein-related	[more]
AT1G62520.1	6.6e-06	33.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11490.1	1.5e-05	34.25	zinc finger (C2H2 type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31681:SF3	C2H2-LIKE ZINC FINGER PROTEIN	coord: 20..74 coord: 78..112
None	No IPR available	PANTHER	PTHR31681	C2H2-LIKE ZINC FINGER PROTEIN	coord: 20..74 coord: 78..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G060580.1	Cla97C03G060580.1	mRNA