Cla97C03G060100 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G060100
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Structural constituent of ribosome
Location	Cla97Chr03: 10754029 .. 10754418 (-)
RNA-Seq Expression	Cla97C03G060100
Synteny	Cla97C03G060100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

mRNA sequence

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

Coding sequence (CDS)

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

Protein sequence

MQRKKIDLKEQEKAGEIWGPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEGNATLMLEVAVPGVVRNLTTGTLPLL

Homology

[Close]

BLAST of Cla97C03G060100 vs. NCBI nr
Match: XP_038876069.1 (uncharacterized protein LOC120068390 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-28
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPK-----VRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRH 65
           +DLK+ +K  ++   K FP      + R  DEK+YPPP+PLLVRTEN+G    PWVM+R 
Sbjct: 26  VDLKDHQKGADMSPAKSFPNKMWGIIGRKVDEKEYPPPIPLLVRTENLGYSHMPWVMKRK 85

Query: 66  CTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEGN-----ATLMLEVAVP 116
            T DGRLILTEEKVRH EFFRAHRS GRL LQLVAVEE+  E GN     ATLML VAVP
Sbjct: 86  YTADGRLILTEEKVRHCEFFRAHRSDGRLTLQLVAVEERNVEMGNVRGRDATLMLGVAVP 145

[Close]

BLAST of Cla97C03G060100 vs. NCBI nr
Match: KAG6579017.1 (hypothetical protein SDJN03_23465, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPKVRRS-----------KDEKQYPPPLPLLVRTENMGSHMKP 65
           +DLK+ + A +I     FP+   S           KD+K YPPP+PLLVRTEN+GSH+ P
Sbjct: 34  VDLKDNDTAADITPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHI-P 93

Query: 66  WVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEE 104
           WVM+R  TGDGRLILTEEKV+H EFFRAHRS GRLMLQLV +++Q  +E
Sbjct: 94  WVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDE 141

[Close]

BLAST of Cla97C03G060100 vs. NCBI nr
Match: XP_022939970.1 (uncharacterized protein LOC111445672 [Cucurbita moschata])

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPKVRRS-----------KDEKQYPPPLPLLVRTENMGSHMKP 65
           +DLK+ + A +I     FP+   S           KD+K YPPP+PLLVRTEN+GSH+ P
Sbjct: 34  VDLKDNDTAADITPLASFPEGGNSKRDIKTSWMGRKDQKNYPPPIPLLVRTENLGSHI-P 93

Query: 66  WVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEE 104
           WVM+R  TGDGRLILTEEKV+H EFFRAHRS GRLMLQLV +++Q  +E
Sbjct: 94  WVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDE 141

[Close]

BLAST of Cla97C03G060100 vs. NCBI nr
Match: KAG7016540.1 (hypothetical protein SDJN02_21649 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPKVRRS-----------KDEKQYPPPLPLLVRTENMGSHMKP 65
           +DLK+ + A +I     FP+   S           KD+K YPPP+PLLVRTEN+GSH+ P
Sbjct: 45  VDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHI-P 104

Query: 66  WVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEE 104
           WVM+R  TGDGRLILTEEKV+H EFFRAHRS GRLMLQLV +++Q  +E
Sbjct: 105 WVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDE 152

[Close]

BLAST of Cla97C03G060100 vs. NCBI nr
Match: XP_022141391.1 (uncharacterized protein LOC111011804, partial [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIW---GPKRFPKVRRSK-------DEKQYPPPLPLLVRTENMGSHMKPW 65
           +DLKE + A +      P +F   R +K        E++YPPP+PLLVRTEN+ SHM PW
Sbjct: 57  VDLKENQTAADTMPPPPPMKFSDKRENKMWGGTGRKEREYPPPIPLLVRTENLASHM-PW 116

Query: 66  VMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEG 105
           V++RH TGDGRLILTEEKVRH E+FRAHRS GRLMLQLVA+++   E G
Sbjct: 117 VLKRHYTGDGRLILTEEKVRHHEYFRAHRSDGRLMLQLVALDDGDGESG 164

[Close]

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL
Match: A0A6J1FP95 (uncharacterized protein LOC111445672 OS=Cucurbita moschata OX=3662 GN=LOC111445672 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPKVRRS-----------KDEKQYPPPLPLLVRTENMGSHMKP 65
           +DLK+ + A +I     FP+   S           KD+K YPPP+PLLVRTEN+GSH+ P
Sbjct: 34  VDLKDNDTAADITPLASFPEGGNSKRDIKTSWMGRKDQKNYPPPIPLLVRTENLGSHI-P 93

Query: 66  WVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEE 104
           WVM+R  TGDGRLILTEEKV+H EFFRAHRS GRLMLQLV +++Q  +E
Sbjct: 94  WVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDE 141

[Close]

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL
Match: A0A6J1CJ12 (uncharacterized protein LOC111011804 OS=Momordica charantia OX=3673 GN=LOC111011804 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.5e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   IDLKEQEKAGEIW---GPKRFPKVRRSK-------DEKQYPPPLPLLVRTENMGSHMKPW 65
           +DLKE + A +      P +F   R +K        E++YPPP+PLLVRTEN+ SHM PW
Sbjct: 57  VDLKENQTAADTMPPPPPMKFSDKRENKMWGGTGRKEREYPPPIPLLVRTENLASHM-PW 116

Query: 66  VMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEG 105
           V++RH TGDGRLILTEEKVRH E+FRAHRS GRLMLQLVA+++   E G
Sbjct: 117 VLKRHYTGDGRLILTEEKVRHHEYFRAHRSDGRLMLQLVALDDGDGESG 164

[Close]

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL
Match: A0A6J1JUP6 (uncharacterized protein LOC111489066 OS=Cucurbita maxima OX=3661 GN=LOC111489066 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGPKRFPKVRRS-----------KDEKQYPPPLPLLVRTENMGSHMKP 65
           +DLK    A +I     FP+   S           K++K YPPP+PLLVRTEN+ SH+ P
Sbjct: 34  VDLKGHHTAADITPLASFPEGGNSKRDNKTSWMGRKNQKNYPPPIPLLVRTENLASHI-P 93

Query: 66  WVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQ-MAEEGN 106
           WVM+R  TGDGRLILTEEKV+H EFFRAHRS GRLMLQLV +++Q + EEG+
Sbjct: 94  WVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEEGD 144

[Close]

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL
Match: A0A6J1JTI2 (uncharacterized protein LOC111487372 OS=Cucurbita maxima OX=3661 GN=LOC111487372 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGP--KRFPKV--RRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHC 65
           +DL+E   A +I G   KR  K+     KD  +YPPP+ LLVRTEN+ S M PWV++R  
Sbjct: 25  VDLRENHTAADISGENCKRDNKMLGMERKDHNEYPPPIQLLVRTENLASQM-PWVLKRRY 84

Query: 66  TGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEGNATL 109
           T DGRLILT+E++RH EFFRAHRS GRLMLQLVA ++Q  +E N  +
Sbjct: 85  TDDGRLILTDERLRHYEFFRAHRSDGRLMLQLVAFDDQGYDESNVEI 130

[Close]

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL
Match: A0A6J1GVY4 (uncharacterized protein LOC111458031 OS=Cucurbita moschata OX=3662 GN=LOC111458031 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 6   IDLKEQEKAGEIWGP--KRFPKV--RRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHC 65
           +DL E   + +I G   +R  K+     KD  +YPPP+ LLVRTEN+ S M PWV++RH 
Sbjct: 25  VDLMENHTSSDISGENCRRDNKMWGMERKDHNEYPPPIQLLVRTENLASQM-PWVLKRHY 84

Query: 66  TGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEGNATL 109
           T DGRLILTEE++R+ EFFRAHRS GRLMLQLVA ++Q  +E N  +
Sbjct: 85  TDDGRLILTEERLRYYEFFRAHRSNGRLMLQLVAFDDQGYDESNVEI 130

[Close]

BLAST of Cla97C03G060100 vs. TAIR 10
Match: AT1G22110.1 (structural constituent of ribosome )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 19  GPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHRE 78
           G +R  +  R+   +++PPP+PLL +T N+  HM PWV++R  T DGRLIL EEKVRH E
Sbjct: 86  GRRREEREARAAAAREFPPPIPLLAQTGNLLPHM-PWVLKRVVTSDGRLILREEKVRHHE 145

Query: 79  FFRAHRSGGRLMLQLVAVEEQM 101
           +FRA+RS GRL L LV +++ +
Sbjct: 146 YFRANRSNGRLTLHLVPLDDDV 166

[Close]

BLAST of Cla97C03G060100 vs. TAIR 10
Match: AT1G77932.1 (Protein of unknown function (DUF3049) )

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-10
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 12 EKAGEIWGP-KRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILT 71
          +K G++  P +R  + +    E   PP LP         SH+ P V++R  T DGRL+L 
Sbjct: 22 DKTGDVKLPCERREEKKTVAREIMSPPMLP---------SHV-PSVLKREYTSDGRLLLK 81

Query: 72 EEKVRHREFFRAHRSGGRLMLQLVAVEE 99
          EEKV   E+FRAHRS GRLM+QLV+++E
Sbjct: 82 EEKVCRNEYFRAHRSNGRLMIQLVSLDE 99

[Close]

BLAST of Cla97C03G060100 vs. TAIR 10
Match: AT5G22390.1 (Protein of unknown function (DUF3049) )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 31/88 (35.23%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 16  EIWGPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVR 75
           E W P+R       K+ K+YPP +          + M     R+    +GRL+L E ++ 
Sbjct: 123 EEWEPRR-------KERKEYPPAM----------TRMSFKTYRK----EGRLVLEEVRIP 182

Query: 76  HREFFRAHRSGGRLMLQLVAVEEQMAEE 104
            REF RA R  GRL L+LV  E+   EE
Sbjct: 183 RREFLRASREDGRLRLKLVQPEDDHDEE 189

The following BLAST results are available for this feature:

BLAST of Cla97C03G060100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876069.1	6.9e-28	61.67	uncharacterized protein LOC120068390 [Benincasa hispida]	[more]
KAG6579017.1	6.0e-24	57.80	hypothetical protein SDJN03_23465, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939970.1	6.0e-24	57.80	uncharacterized protein LOC111445672 [Cucurbita moschata]	[more]
KAG7016540.1	7.9e-24	57.80	hypothetical protein SDJN02_21649 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022141391.1	1.8e-23	57.80	uncharacterized protein LOC111011804, partial [Momordica charantia]	[more]

BLAST of Cla97C03G060100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C03G060100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP95	2.9e-24	57.80	uncharacterized protein LOC111445672 OS=Cucurbita moschata OX=3662 GN=LOC1114456...	[more]
A0A6J1CJ12	8.5e-24	57.80	uncharacterized protein LOC111011804 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JUP6	2.1e-22	56.25	uncharacterized protein LOC111489066 OS=Cucurbita maxima OX=3661 GN=LOC111489066...	[more]
A0A6J1JTI2	2.6e-20	55.14	uncharacterized protein LOC111487372 OS=Cucurbita maxima OX=3661 GN=LOC111487372...	[more]
A0A6J1GVY4	5.7e-20	54.21	uncharacterized protein LOC111458031 OS=Cucurbita moschata OX=3662 GN=LOC1114580...	[more]

BLAST of Cla97C03G060100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22110.1	1.5e-17	51.22	structural constituent of ribosome	[more]
AT1G77932.1	6.9e-10	44.32	Protein of unknown function (DUF3049)	[more]
AT5G22390.1	1.5e-04	35.23	Protein of unknown function (DUF3049)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 35..93 e-value: 3.5E-19 score: 68.8
IPR021410	The fantastic four family	PANTHER	PTHR33155	FANTASTIC FOUR-LIKE PROTEIN (DUF3049)	coord: 23..100
None	No IPR available	PANTHER	PTHR33155:SF36	SUBFAMILY NOT NAMED	coord: 23..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G060100.1	Cla97C03G060100.1	mRNA