Cla97C03G059550 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C03G059550
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Photosystem II CP47 reaction center protein
Location	Cla97Chr03: 8951486 .. 8952515 (+)
RNA-Seq Expression	Cla97C03G059550
Synteny	Cla97C03G059550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCAGCAAAGCTGTCTTGGTGCTTCAAATACCAAGAGTGAGGCTATTGCTGTAATGTTTAGTTAGAGAAAGGCATACAAAATGAAATATGTAAAGGAAATCTTTAGGTTAGGAGTGACCCAATAATCTGATTTTGGTTGGCTTTTGGAAAGGAATAAAGTTATGGGTCTTCCCATGCGCACCTACATGTAGGGAACAAGTGGACCCCATAATCCCTTTAGTATTCACAAATTATAATCTTCTGTCTGTCTGTATTCTATTTCTCATTTTTCTCATTCTTTATGGTTGTCTTCCTGTGTTAACATGAAAAGGTCTTCTTTTATTGTTCTTTGGAAATTGTTCTTACAAACTGTTTTCTATCTTTGTAAGTATATTTGCAATGTAGTTTCTATGAATTTGATCTTGCGAGATTGTGTTTATGGAAGTTGTGGCAATTTGTGCATAACTCAATTAAGGTATGGATCTTTGACAAAAAAGTTGGCGATTAGAATTCAGACTCCCACATATTAAACTCAAAATAAATAAATAAATAAACTTATGTGAGTCTTTGGAATAACATCATTTAAATATTGAATTCAAAATAAATAAATAAATAAACTTATGGGAGTTTTTGGAGTAACATCATTTAAATAATAAGATGGGCAAATGACCACATAATGTCTTTAATATTATAAATCATTCCATCATAGTTTTTAAGAATTGTCTGGTAGAACAAGCAGACAAGTAATCATTTGATTTGTTACATCATTATAAAGTTAAAAAGTTAAAACATATTTGATATTTCTCGTGTTTAATTTTTGTTTTGGCTTTGCTTGTCTTCTTCAGAGACATTTGGCTTGGTGCTAGAACCTTATTCAGAGATATCTTTGTTGGGATTGACTTAGATTTGGATGCTCAAGTAAAATTCGGGGCATTTCAAAAACTTGGAGATTCCATTAAGGTATTAACATGTAGAAAGAGTACCATGCTGTGTTCAAACTTCAAACAGTTTAGCTTTAACCAACATGTTTACTTCCATGGTGGGTAA

mRNA sequence

ATGAGCCAGCAAAGCTGTCTTGGTGCTTCAAATACCAAGAGTGAGGCTATTGCTGTAATAGACATTTGGCTTGGTGCTAGAACCTTATTCAGAGATATCTTTGTTGGGATTGACTTAGATTTGGATGCTCAAGTAAAATTCGGGGCATTTCAAAAACTTGGAGATTCCATTAAGGTATTAACATGTAGAAAGAGTACCATGCTGTGTTCAAACTTCAAACAGTTTAGCTTTAACCAACATGTTTACTTCCATGGTGGGTAA

Coding sequence (CDS)

ATGAGCCAGCAAAGCTGTCTTGGTGCTTCAAATACCAAGAGTGAGGCTATTGCTGTAATAGACATTTGGCTTGGTGCTAGAACCTTATTCAGAGATATCTTTGTTGGGATTGACTTAGATTTGGATGCTCAAGTAAAATTCGGGGCATTTCAAAAACTTGGAGATTCCATTAAGGTATTAACATGTAGAAAGAGTACCATGCTGTGTTCAAACTTCAAACAGTTTAGCTTTAACCAACATGTTTACTTCCATGGTGGGTAA

Protein sequence

MSQQSCLGASNTKSEAIAVIDIWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTMLCSNFKQFSFNQHVYFHGG

Homology

[Close]

BLAST of Cla97C03G059550 vs. NCBI nr
Match: XP_015940753.1 (uncharacterized protein LOC107466285 [Arachis duranensis])

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTMLCSNFKQFSFNQHV 81
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD     T R+ + L + +++F   Q V
Sbjct: 385 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDP----TTRRQSNLINRYERFMATQTV 440

[Close]

BLAST of Cla97C03G059550 vs. NCBI nr
Match: KAG5570944.1 (hypothetical protein H5410_060710 [Solanum commersonii])

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+FVGIDLDLDAQV+FGAFQKLGD
Sbjct: 435 IWHGARTLFRDVFVGIDLDLDAQVEFGAFQKLGD 468

[Close]

BLAST of Cla97C03G059550 vs. NCBI nr
Match: KAF4348560.1 (hypothetical protein F8388_000239 [Cannabis sativa])

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-08
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTMLCSN 72
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD         ST + SN
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRQATISTQITSN 516

[Close]

BLAST of Cla97C03G059550 vs. NCBI nr
Match: QHO42902.1 (Photosystem II CP47 reaction center protein [Arachis hypogaea] >RYR57568.1 hypothetical protein Ahy_A05g023271 [Arachis hypogaea])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GIDLDLDAQV+FGAFQKLGD
Sbjct: 461 IWHGARTLFRDVFAGIDLDLDAQVEFGAFQKLGD 494

[Close]

BLAST of Cla97C03G059550 vs. NCBI nr
Match: QEV84735.1 (photosystem II CP47 chlorophyll apoprotein [Hexalectris grandiflora])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GIDLDLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDLDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot
Match: Q0G9T6 (Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-10
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTM 68
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD     T R+ T+
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDP----TTRRQTV 508

[Close]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot
Match: Q85FJ7 (Photosystem II CP47 reaction center protein OS=Adiantum capillus-veneris OX=13818 GN=psbB PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot
Match: A2T359 (Photosystem II CP47 reaction center protein OS=Angiopteris evecta OX=13825 GN=psbB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL
Match: A0A6P4C2A4 (uncharacterized protein LOC107466285 OS=Arachis duranensis OX=130453 GN=LOC107466285 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.8e-09
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTMLCSNFKQFSFNQHV 81
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD     T R+ + L + +++F   Q V
Sbjct: 385 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDP----TTRRQSNLINRYERFMATQTV 440

[Close]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL
Match: A0A7J6DRW5 (CYTB_NTER domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_000239 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGDSIKVLTCRKSTMLCSN 72
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD         ST + SN
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRQATISTQITSN 516

[Close]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL
Match: A0A5J6KF65 (Photosystem II CP47 reaction center protein OS=Hexalectris revoluta OX=142981 GN=psbB PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.7e-08
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GIDLDLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDLDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL
Match: A0A5J6KEY1 (Photosystem II CP47 reaction center protein OS=Hexalectris grandiflora OX=397655 GN=psbB PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.7e-08
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GIDLDLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDLDLDAQVEFGAFQKLGD 500

[Close]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL
Match: A0A445D2Y2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023271 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.7e-08
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GIDLDLDAQV+FGAFQKLGD
Sbjct: 461 IWHGARTLFRDVFAGIDLDLDAQVEFGAFQKLGD 494

[Close]

BLAST of Cla97C03G059550 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 22  IWLGARTLFRDIFVGIDLDLDAQVKFGAFQKLGD 56
           IW GARTLFRD+F GID DLDAQV+FGAFQKLGD
Sbjct: 467 IWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGD 500

The following BLAST results are available for this feature:

BLAST of Cla97C03G059550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015940753.1	1.8e-08	58.33	uncharacterized protein LOC107466285 [Arachis duranensis]	[more]
KAG5570944.1	4.0e-08	91.18	hypothetical protein H5410_060710 [Solanum commersonii]	[more]
KAF4348560.1	6.9e-08	66.00	hypothetical protein F8388_000239 [Cannabis sativa]	[more]
QHO42902.1	1.2e-07	88.24	Photosystem II CP47 reaction center protein [Arachis hypogaea] >RYR57568.1 hypot...	[more]
QEV84735.1	1.2e-07	88.24	photosystem II CP47 chlorophyll apoprotein [Hexalectris grandiflora]	[more]

BLAST of Cla97C03G059550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0G9T6	5.9e-10	69.57	Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=...	[more]
Q85FJ7	1.0e-09	85.29	Photosystem II CP47 reaction center protein OS=Adiantum capillus-veneris OX=1381...	[more]
A4QJE1	1.0e-09	85.29	Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJM5	1.0e-09	85.29	Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]
A2T359	1.0e-09	85.29	Photosystem II CP47 reaction center protein OS=Angiopteris evecta OX=13825 GN=ps...	[more]

BLAST of Cla97C03G059550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P4C2A4	8.8e-09	58.33	uncharacterized protein LOC107466285 OS=Arachis duranensis OX=130453 GN=LOC10746...	[more]
A0A7J6DRW5	3.3e-08	66.00	CYTB_NTER domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_000239 P...	[more]
A0A5J6KF65	5.7e-08	88.24	Photosystem II CP47 reaction center protein OS=Hexalectris revoluta OX=142981 GN...	[more]
A0A5J6KEY1	5.7e-08	88.24	Photosystem II CP47 reaction center protein OS=Hexalectris grandiflora OX=397655...	[more]
A0A445D2Y2	5.7e-08	88.24	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023271 PE=3 SV=1	[more]

BLAST of Cla97C03G059550 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	7.1e-11	85.29	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 21..55 e-value: 1.2E-6 score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G059550.1	Cla97C03G059550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0050821	protein stabilization
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0042301	phosphate ion binding