Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGATGATCATTAAGCGCTCAATTCCAAGGATATATCAGGACTTGATTGTTGAGAGCACGAACGTCAAAGTTTTCTTGAAAGAACAAGAGCAATCCTTTGTTAAAAATGAACATGAAGAGGCAAGAGATCTTTTGACTAAGCTCATCACTATGAGGTACAGTGGGAAGGGCAACGTAAGGGAATACATAATGGAGATGTTGAGTCTCGCTTCGAGACTTAGAGCTCTAAAGTTGGAGATTTGTGAAGACCTTCTTGTGCACTTTGTTTTGATGTCTCTTCCTACACAATATACTCAACTTAAAGTGTGTTACAACACTCAAGTGCACAAATGGACTCTCAATGAACTGATCTCATTTTGTGTGGCTGAAGAGGAAAGGATGCAGCAAGAAGAAAGTGAAAGTGATCATTTGGAATCTACCTCTAGAGGCAAGAAGAAAAAGAGGGAGCAAGATGATATATAG
mRNA sequence
ATGAGTTTGATGATCATTAAGCGCTCAATTCCAAGGATATATCAGGACTTGATTGTTGAGAGCACGAACGTCAAAGTTTTCTTGAAAGAACAAGAGCAATCCTTTGTTAAAAATGAACATGAAGAGGCAAGAGATCTTTTGACTAAGCTCATCACTATGAGGTACAGTGGGAAGGGCAACGTAAGGGAATACATAATGGAGATGTTGAGTCTCGCTTCGAGACTTAGAGCTCTAAAGTTGGAGATTTGTGAAGACCTTCTTGTGCACTTTGTTTTGATGTCTCTTCCTACACAATATACTCAACTTAAAGTGTGTTACAACACTCAAGTGCACAAATGGACTCTCAATGAACTGATCTCATTTTGTGTGGCTGAAGAGGAAAGGATGCAGCAAGAAGAAAGTGAAAGTGATCATTTGGAATCTACCTCTAGAGGCAAGAAGAAAAAGAGGGAGCAAGATGATATATAG
Coding sequence (CDS)
ATGAGTTTGATGATCATTAAGCGCTCAATTCCAAGGATATATCAGGACTTGATTGTTGAGAGCACGAACGTCAAAGTTTTCTTGAAAGAACAAGAGCAATCCTTTGTTAAAAATGAACATGAAGAGGCAAGAGATCTTTTGACTAAGCTCATCACTATGAGGTACAGTGGGAAGGGCAACGTAAGGGAATACATAATGGAGATGTTGAGTCTCGCTTCGAGACTTAGAGCTCTAAAGTTGGAGATTTGTGAAGACCTTCTTGTGCACTTTGTTTTGATGTCTCTTCCTACACAATATACTCAACTTAAAGTGTGTTACAACACTCAAGTGCACAAATGGACTCTCAATGAACTGATCTCATTTTGTGTGGCTGAAGAGGAAAGGATGCAGCAAGAAGAAAGTGAAAGTGATCATTTGGAATCTACCTCTAGAGGCAAGAAGAAAAAGAGGGAGCAAGATGATATATAG
Protein sequence
MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGNVREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELISFCVAEEERMQQEESESDHLESTSRGKKKKREQDDI
Homology
BLAST of Cla97C03G053395 vs. NCBI nr
Match:
XP_038895752.1 (uncharacterized protein LOC120083916 [Benincasa hispida])
HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 135/155 (87.10%), Postives = 147/155 (94.84%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
MSLMIIKRSIPR+YQ+LIVES N KVFLKE EQSF KNE+EEARDLLTKL+ MRY+GKGN
Sbjct: 66 MSLMIIKRSIPRVYQNLIVESMNAKVFLKELEQSFAKNENEEARDLLTKLVVMRYTGKGN 125
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYI+EM SLA++L+ALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQ HKWTLNELIS
Sbjct: 126 IREYIIEMSSLATKLKALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQKHKWTLNELIS 185
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQDDI 156
FCVAEEERMQQEESESD+LESTS+GKKKKRE DDI
Sbjct: 186 FCVAEEERMQQEESESDNLESTSKGKKKKREHDDI 220
BLAST of Cla97C03G053395 vs. NCBI nr
Match:
XP_022157933.1 (uncharacterized protein LOC111024541 [Momordica charantia])
HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 104/150 (69.33%), Postives = 127/150 (84.67%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKG- 60
MSLMIIKRSI +++ DLI+ESTNV+ LKE EQ F +NE+ EA DLLTKL+TMRY+ KG
Sbjct: 25 MSLMIIKRSISKMFHDLILESTNVRALLKELEQCFARNENAEAGDLLTKLVTMRYTEKGN 84
Query: 61 NVREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELI 120
N+REYIMEM SLA+RLR LKLE+ EDLL+HFVLMSLPT+Y QLKVCYNTQ KWTL ELI
Sbjct: 85 NIREYIMEMASLAARLRTLKLEVSEDLLIHFVLMSLPTRYNQLKVCYNTQKEKWTLVELI 144
Query: 121 SFCVAEEERMQQEESESDHLESTSRGKKKK 150
S+CV EEER+++EE+E+D ST +GK++K
Sbjct: 145 SYCVGEEERLRREETETDRSASTFQGKEEK 174
BLAST of Cla97C03G053395 vs. NCBI nr
Match:
XP_024029782.1 (uncharacterized protein LOC112094049 [Morus notabilis])
HSP 1 Score: 177.6 bits (449), Expect = 8.5e-41
Identity = 95/153 (62.09%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
MSLMI+KRSIP ++ I ESTN K FLKE EQ F KNE E +LL KLI MRY GN
Sbjct: 33 MSLMIMKRSIPEAFRGSITESTNAKKFLKELEQYFAKNEKSETSNLLNKLIFMRYKANGN 92
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM ++A +L+AL LE+ EDLLVH VL+ LPTQY+Q KV YN Q KWT+NELIS
Sbjct: 93 IREYIMEMSNIAEKLKALTLELSEDLLVHLVLIFLPTQYSQFKVGYNIQKEKWTVNELIS 152
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
+CV EEER+Q++++ES HL STS+ K K+R D
Sbjct: 153 YCVQEEERLQRDKTESAHLASTSQNKNKRRAMD 185
BLAST of Cla97C03G053395 vs. NCBI nr
Match:
KYP39716.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])
HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+P +++ I ES N K FL EQ F NE +A LL KLI+MRY GKGN
Sbjct: 53 MCLMIMKRSVPEVFRGSISESKNAKGFLDAVEQYFTSNEKADASSLLAKLISMRYKGKGN 112
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 113 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDKWTLNELIS 172
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
CV EEER Q+E++ES HL S+S+ +K+K +D
Sbjct: 173 HCVQEEERQQREKTESAHLASSSQNRKRKNNKD 205
BLAST of Cla97C03G053395 vs. NCBI nr
Match:
KYP35727.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])
HSP 1 Score: 171.8 bits (434), Expect = 4.7e-39
Identity = 93/153 (60.78%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+P ++ I ES N K FL EQ F NE +A LL KLI+MRY GKGN
Sbjct: 53 MCLMIMKRSVPEVFWGSISESQNAKGFLDVVEQYFTSNEKVDASSLLAKLISMRYKGKGN 112
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 113 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDKWTLNELIS 172
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
CV EEER Q+E++ES HL S+S+ +K+K +D
Sbjct: 173 HCVQEEERQQREKTESAHLASSSQNRKRKNNKD 205
BLAST of Cla97C03G053395 vs. ExPASy TrEMBL
Match:
A0A6J1DUQ1 (uncharacterized protein LOC111024541 OS=Momordica charantia OX=3673 GN=LOC111024541 PE=4 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 5.0e-47
Identity = 104/150 (69.33%), Postives = 127/150 (84.67%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKG- 60
MSLMIIKRSI +++ DLI+ESTNV+ LKE EQ F +NE+ EA DLLTKL+TMRY+ KG
Sbjct: 25 MSLMIIKRSISKMFHDLILESTNVRALLKELEQCFARNENAEAGDLLTKLVTMRYTEKGN 84
Query: 61 NVREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELI 120
N+REYIMEM SLA+RLR LKLE+ EDLL+HFVLMSLPT+Y QLKVCYNTQ KWTL ELI
Sbjct: 85 NIREYIMEMASLAARLRTLKLEVSEDLLIHFVLMSLPTRYNQLKVCYNTQKEKWTLVELI 144
Query: 121 SFCVAEEERMQQEESESDHLESTSRGKKKK 150
S+CV EEER+++EE+E+D ST +GK++K
Sbjct: 145 SYCVGEEERLRREETETDRSASTFQGKEEK 174
BLAST of Cla97C03G053395 vs. ExPASy TrEMBL
Match:
A0A151RB35 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_038971 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 6.0e-40
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+P +++ I ES N K FL EQ F NE +A LL KLI+MRY GKGN
Sbjct: 53 MCLMIMKRSVPEVFRGSISESKNAKGFLDAVEQYFTSNEKADASSLLAKLISMRYKGKGN 112
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 113 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDKWTLNELIS 172
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
CV EEER Q+E++ES HL S+S+ +K+K +D
Sbjct: 173 HCVQEEERQQREKTESAHLASSSQNRKRKNNKD 205
BLAST of Cla97C03G053395 vs. ExPASy TrEMBL
Match:
A0A151QZJ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_043224 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 2.3e-39
Identity = 93/153 (60.78%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+P ++ I ES N K FL EQ F NE +A LL KLI+MRY GKGN
Sbjct: 53 MCLMIMKRSVPEVFWGSISESQNAKGFLDVVEQYFTSNEKVDASSLLAKLISMRYKGKGN 112
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 113 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDKWTLNELIS 172
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
CV EEER Q+E++ES HL S+S+ +K+K +D
Sbjct: 173 HCVQEEERQQREKTESAHLASSSQNRKRKNNKD 205
BLAST of Cla97C03G053395 vs. ExPASy TrEMBL
Match:
A0A151RDF9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_038014 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 6.6e-39
Identity = 92/153 (60.13%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+P +++D I ES N K L EQ F NE +A LL KLI+MR GKGN
Sbjct: 86 MCLMIMKRSVPEVFRDSISESQNAKGLLDVVEQYFTSNEKADASSLLAKLISMRNKGKGN 145
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 146 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDKWTLNELIS 205
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQD 154
CV EEER Q+E++ES HL S+S+ +K+K +D
Sbjct: 206 HCVQEEERQQREKTESAHLASSSQNRKRKNNKD 238
BLAST of Cla97C03G053395 vs. ExPASy TrEMBL
Match:
A0A151TRZ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_009021 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 92/155 (59.35%), Postives = 116/155 (74.84%), Query Frame = 0
Query: 1 MSLMIIKRSIPRIYQDLIVESTNVKVFLKEQEQSFVKNEHEEARDLLTKLITMRYSGKGN 60
M LMI+KRS+ + + I ES N K FL EQ F NE +A +LL KLI+MRY GKGN
Sbjct: 53 MCLMIMKRSVLEVLRGFISESQNAKGFLDAIEQYFTSNEKVDASNLLAKLISMRYKGKGN 112
Query: 61 VREYIMEMLSLASRLRALKLEICEDLLVHFVLMSLPTQYTQLKVCYNTQVHKWTLNELIS 120
+REYIMEM +LAS+L+ALKLE+ +DLLVH VL+SLPT + Q KV YNTQ KWTLNELIS
Sbjct: 113 IREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVIYNTQKDKWTLNELIS 172
Query: 121 FCVAEEERMQQEESESDHLESTSRGKKKKREQDDI 156
CV EEER +E++ES HL S+S+ +K+K +DD+
Sbjct: 173 HCVQEEERQLREKTESAHLASSSQNRKRKNNKDDV 207
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038895752.1 | 1.3e-65 | 87.10 | uncharacterized protein LOC120083916 [Benincasa hispida] | [more] |
| XP_022157933.1 | 1.0e-46 | 69.33 | uncharacterized protein LOC111024541 [Momordica charantia] | [more] |
| XP_024029782.1 | 8.5e-41 | 62.09 | uncharacterized protein LOC112094049 [Morus notabilis] | [more] |
| KYP39716.1 | 1.2e-39 | 60.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | [more] |
| KYP35727.1 | 4.7e-39 | 60.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DUQ1 | 5.0e-47 | 69.33 | uncharacterized protein LOC111024541 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
| A0A151RB35 | 6.0e-40 | 60.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... | [more] |
| A0A151QZJ9 | 2.3e-39 | 60.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... | [more] |
| A0A151RDF9 | 6.6e-39 | 60.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... | [more] |
| A0A151TRZ9 | 1.1e-38 | 59.35 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
