Cla97C02G048450 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G048450
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Poly(A)-specific ribonuclease
Location	Cla97Chr02: 35973433 .. 35974917 (+)
RNA-Seq Expression	Cla97C02G048450
Synteny	Cla97C02G048450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCGACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCCGCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCGTGATCTTCACGCGCCCGATTCCATCCATCTCTTGAAACGACAGGGCATTGATTTCGAACGCAACAGAGTTCACGGGGTTCACTCTTCTTTGTAACGACTCGCTCACTTGCCTATGACTTTGGCTACTTGGTTAAGATCCTCACTCGGACCAAACTGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCTCCATGACTTCTTCAAAATTCTCAGGGCCTTCTTTGGGAATAAGGTTTATGACGTCAAGCATATGATGCGGTTCTGTGATGGCCTTTATGGAGGCTTGGACCGGGTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATAGCTTGCTGACGTGGCAAGCTTTCCAGAAGATGAGGGACGTCTATTTCTTAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTATGGATTAGAAGTGTGTTAAATATATATATATATATATAAATAACATTCAATTTTTATTATTATTTTAACGATATTTTTAGTAAATGTATTCTCTAATACGGAACAAACAACCACCACCTTATATAAAAAGAAAGAAAAAAATAAATAAATAAATAAACAACCAAATATAATATATATGGGATAAATATGGAGTTATTAAGCGATTGACTTAGGAAATAACAATAACATAAGTCTGACCTCTGAAATTAATTGCAAGTAGCACCCACCTTTTCAAATTGGAAATACTATTTATCTTAACTTTCCAATATGTAACTATTTAATTATCCAAAGTTAATTTAAACTTGTTTCCAAGGTTTAACCCGTTTGTTATTTTGTTTGTTGCTACGTAATTTTCTTTCCTCCCTAACATTTTTTTCAAAGGTATTTTATGAGAATGAAAAATGGAATGGTTGTTTGGAAGGTATTCTTTTCCGTATCATTATTAAAAGATTTGGTTGAAAATCACTCTTTTTCAAACTTTACTTCGGCCGGTCATTTTTAAAGTTGAGAACATAAAGAGGTTTCTAACATTAGTTTACAGCCCATGGCTTGTGATTGGGCTTTATAAAAGCTCTTGATTCATGGCCCACCAAATAAATGCTGAATATCGGTTCGGCCCAGAGATTATGTATGGGCTGCCATTCTGATGGGCGAAGCCCTGGTCCGCCGTTATGGAAGGGTATGATTGATTATATCATTGTAATTCCCTTTATATTATATTGTTACGAAAGTGTCGTGTGTGTCTTAGTTATTTGATTGACTATTTATTGGCCTTTGTAAGCTAATCCTTTTCTTTTCAGGTAGCAAAAGAGTTCTTGTTGCTGTGCGAAGTCGAGGTCTGCCGTAG

mRNA sequence

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCGACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCCGCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCGTGATCTTCACGCGCCCGATTCCATCCATCTCTTGAAACGACAGGGCATTGATTTCGAACGCAACAGAGTTCACGGGGTTCACTCTTCTTTGGCCTTCTTTGGGAATAAGGTTTATGACGTCAAGCATATGATGCGGTTCTGTGATGGCCTTTATGGAGGCTTGGACCGGGTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATAGCTTGCTGACGTGGCAAGCTTTCCAGAAGATGAGGGACGTCTATTTCTTAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTATGGATTAGAAAGATTATGTATGGGCTGCCATTCTGATGGGCGAAGCCCTGGTCCGCCGTTATGGAAGGGTAGCAAAAGAGTTCTTGTTGCTGTGCGAAGTCGAGGTCTGCCGTAG

Coding sequence (CDS)

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCCCTCCGATCACTACCTTCTCCTCAAGTCCGACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCCGCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCGTGATCTTCACGCGCCCGATTCCATCCATCTCTTGAAACGACAGGGCATTGATTTCGAACGCAACAGAGTTCACGGGGTTCACTCTTCTTTGGCCTTCTTTGGGAATAAGGTTTATGACGTCAAGCATATGATGCGGTTCTGTGATGGCCTTTATGGAGGCTTGGACCGGGTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATAGCTTGCTGACGTGGCAAGCTTTCCAGAAGATGAGGGACGTCTATTTCTTAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTATGGATTAGAAAGATTATGTATGGGCTGCCATTCTGATGGGCGAAGCCCTGGTCCGCCGTTATGGAAGGGTAGCAAAAGAGTTCTTGTTGCTGTGCGAAGTCGAGGTCTGCCGTAG

Protein sequence

MDTEFPGVLIRPSDHYLLLKSDVDALNLIQLGLTLRTHQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSSLAFFGNKVYDVKHMMRFCDGLYGGLDRVANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYGLERLCMGCHSDGRSPGPPLWKGSKRVLVAVRSRGLP

Homology

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BLAST of Cla97C02G048450 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-68
Identity = 146/232 (62.93%), Postives = 151/232 (65.09%), Query Frame = 0


Query: 1   MDTEFPGVLI---------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTF 60
           MDTEFPGV+I         RPSDHYLLLKS+VDALNLIQ+GLTL           T   F
Sbjct: 32  MDTEFPGVVIRPALHRPRLRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDNCF 91

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--------------------- 120
           IWEFNFRDFDV RDLHAPDSI LLKRQGIDFERNR+HGV                     
Sbjct: 92  IWEFNFRDFDVVRDLHAPDSIELLKRQGIDFERNRIHGVPSSRFAELLMSSGLLCNDSVT 151

Query: 121 ----HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDR 163
               HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDR
Sbjct: 152 WVTFHSAYDFGYLVKILTRTKLPARLHDFLKILRGLFGNKVYDVKHMMRFCDGLYGGLDR 211

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BLAST of Cla97C02G048450 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 39  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 98

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 99  EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 158

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 159 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 218

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BLAST of Cla97C02G048450 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 90  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 149

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 150 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 209

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 210 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 269

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BLAST of Cla97C02G048450 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 87  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 146

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 147 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 206

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 207 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 266

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BLAST of Cla97C02G048450 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 89  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 148

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 149 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 208

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 209 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 268

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BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-58
Identity = 125/233 (53.65%), Postives = 143/233 (61.37%), Query Frame = 0


Query: 1   MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTF 60
           MDTEFPGV+ +       P D Y LLK++VDAL+LIQ+GLTL              H+ F
Sbjct: 46  MDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGF 105

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--------------------- 120
           IWEFNFRDFDVARD HAPDSI LL+RQGIDFERN   GV                     
Sbjct: 106 IWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165

Query: 121 ----HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLD 163
               HS+  F                          FG +VYDVKHMM+FC+  L+GGLD
Sbjct: 166 WVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLD 225

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BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-56
Identity = 122/236 (51.69%), Postives = 143/236 (60.59%), Query Frame = 0


Query: 1   MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTH 60
           MDTEFPGV+ +          P+  Y LLKS+VDAL+LIQ+GLTL            + +
Sbjct: 41  MDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKN 100

Query: 61  QTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS--------------- 120
           + +IWEFNFRDFDV RD HAPDSI LL+R GIDFERNR  GV S                
Sbjct: 101 RRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNE 160

Query: 121 ------------------------------------LAFFGNKVYDVKHMMRFCD-GLYG 163
                                                AFFG++VYDVKH+MRFC+  LYG
Sbjct: 161 SVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYG 220

[Close]

BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.6e-33
Identity = 86/229 (37.55%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFI 60
           MDTEFPGV+++P          +Y  LK +VD L LIQ+GLT            T +  I
Sbjct: 39  MDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCI 98

Query: 61  WEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-------------------SS 120
           W+FNFR+F++  D++A +SI LL++ GIDF++N   G+                    S 
Sbjct: 99  WQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISW 158

Query: 121 LAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVA 162
           + F G                                 VYD+KH+M FC+GL+GGL+R+A
Sbjct: 159 VTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLA 218

[Close]

BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 83/230 (36.09%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTF 60
           MDTEFPG++ RP          HY  LK++V+ L +IQLGLT              ++  
Sbjct: 39  MDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYC 98

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS------------------ 120
           IW+FNFR+FD+  D++A DSI LL++ GIDF +N   G+ S                   
Sbjct: 99  IWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVH 158

Query: 121 --------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRV 162
                                           ++ +  +VYD+KH+M+FC+ L+GGL+++
Sbjct: 159 WVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKL 218

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BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-32
Identity = 87/230 (37.83%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFI 60
           MDTEFPG+++RP          HY  LK++V+ L +IQLGLT            T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV---------------------- 120
           W+FNFR+FD+  D+ A DSI LLK+ GID  +N + G+                      
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHW 158

Query: 121 ---HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVA 162
              HS   F                         +   VYD+KH+M+FC+ L+GGL+++A
Sbjct: 159 VTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

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BLAST of Cla97C02G048450 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.5e-68
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 89  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 148

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 149 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 208

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 209 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 268

[Close]

BLAST of Cla97C02G048450 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.5e-68
Identity = 143/230 (62.17%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RPSDHYLLLKSDVDALNLIQLGLTLR----------THQTFIW 60
           MDTEFPGV++       RPSDHYLLLKS+VDALNLIQ+GLTL           T + FIW
Sbjct: 39  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 98

Query: 61  EFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS-------------------- 120
           EFNFRDFDV RDLHAPDSI LLKRQGIDFERNR HGV S+                    
Sbjct: 99  EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWV 158

Query: 121 -------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRVA 163
                                           AFFGNKVYDVKHMMRFCD LYGGL+RVA
Sbjct: 159 TFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVA 218

[Close]

BLAST of Cla97C02G048450 vs. ExPASy TrEMBL
Match: A0A6P3Z4L2 (Poly(A)-specific ribonuclease OS=Ziziphus jujuba OX=326968 GN=LOC107408817 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.4e-62
Identity = 132/236 (55.93%), Postives = 146/236 (61.86%), Query Frame = 0


Query: 1   MDTEFPGVL-------------IRPSDHYLLLKSDVDALNLIQLGLTLR----------T 60
           MDTEFPG++             +RPSDHYLLLKS+VDALNLIQ+GLTL           +
Sbjct: 52  MDTEFPGLVFRPPPQLDPTMRRLRPSDHYLLLKSNVDALNLIQVGLTLSDSLGNLPDLGS 111

Query: 61  HQTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV----------------- 120
           H  FIWEFNF DFDV+RD HAPDSI LL+RQGIDF+RNR  G+                 
Sbjct: 112 HNRFIWEFNFSDFDVSRDAHAPDSIDLLRRQGIDFDRNRDEGIDSRRFAELMMSSGLVCN 171

Query: 121 --------HSSL--------------------------AFFGNKVYDVKHMMRFCDGLYG 163
                   HS+                            FFGN+VYD+KHMMRFC  LYG
Sbjct: 172 DAVSWVTFHSAYDFGYLVKILTRRSLPGRMEEFLRVLRVFFGNRVYDIKHMMRFCKSLYG 231

[Close]

BLAST of Cla97C02G048450 vs. ExPASy TrEMBL
Match: A0A5D3B887 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00210 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.4e-62
Identity = 137/232 (59.05%), Postives = 146/232 (62.93%), Query Frame = 0


Query: 1   MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTF 60
           +DTEFPGVLIR         PSDHYLLLKS+VDALNLIQLGLTL           T  +F
Sbjct: 32  IDTEFPGVLIRPTLHRHPLHPSDHYLLLKSNVDALNLIQLGLTLSDADGNLPTLGTKNSF 91

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--------------------- 120
           IWEFNFRDFDVAR  H P SI LLK+QGIDF RNR HGV                     
Sbjct: 92  IWEFNFRDFDVARHPHNPASIELLKQQGIDFHRNRTHGVCSSQFADLLMSSGLLCNNSLT 151

Query: 121 ----HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDR 163
               HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDR
Sbjct: 152 WVTFHSAYDFGYLVKILTRTKLPSRLHDFLNILGKLFGNKVYDVKHMMRFCDGLYGGLDR 211

[Close]

BLAST of Cla97C02G048450 vs. ExPASy TrEMBL
Match: A0A1S3BNU2 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103491668 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.4e-62
Identity = 137/232 (59.05%), Postives = 146/232 (62.93%), Query Frame = 0


Query: 1   MDTEFPGVLIR---------PSDHYLLLKSDVDALNLIQLGLTLR----------THQTF 60
           +DTEFPGVLIR         PSDHYLLLKS+VDALNLIQLGLTL           T  +F
Sbjct: 27  IDTEFPGVLIRPTLHRHPLHPSDHYLLLKSNVDALNLIQLGLTLSDADGNLPTLGTKNSF 86

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--------------------- 120
           IWEFNFRDFDVAR  H P SI LLK+QGIDF RNR HGV                     
Sbjct: 87  IWEFNFRDFDVARHPHNPASIELLKQQGIDFHRNRTHGVCSSQFADLLMSSGLLCNNSLT 146

Query: 121 ----HSSLAF--------------------------FGNKVYDVKHMMRFCDGLYGGLDR 163
               HS+  F                          FGNKVYDVKHMMRFCDGLYGGLDR
Sbjct: 147 WVTFHSAYDFGYLVKILTRTKLPSRLHDFLNILGKLFGNKVYDVKHMMRFCDGLYGGLDR 206

[Close]

BLAST of Cla97C02G048450 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 125/233 (53.65%), Postives = 143/233 (61.37%), Query Frame = 0


Query: 1   MDTEFPGVLIR-------PSDHYLLLKSDVDALNLIQLGLTLR------------THQTF 60
           MDTEFPGV+ +       P D Y LLK++VDAL+LIQ+GLTL              H+ F
Sbjct: 46  MDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGF 105

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV--------------------- 120
           IWEFNFRDFDVARD HAPDSI LL+RQGIDFERN   GV                     
Sbjct: 106 IWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165

Query: 121 ----HSSLAF--------------------------FGNKVYDVKHMMRFCD-GLYGGLD 163
               HS+  F                          FG +VYDVKHMM+FC+  L+GGLD
Sbjct: 166 WVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLD 225

[Close]

BLAST of Cla97C02G048450 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 218.8 bits (556), Expect = 3.9e-57
Identity = 122/236 (51.69%), Postives = 143/236 (60.59%), Query Frame = 0


Query: 1   MDTEFPGVLIR----------PSDHYLLLKSDVDALNLIQLGLTL------------RTH 60
           MDTEFPGV+ +          P+  Y LLKS+VDAL+LIQ+GLTL            + +
Sbjct: 41  MDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKN 100

Query: 61  QTFIWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS--------------- 120
           + +IWEFNFRDFDV RD HAPDSI LL+R GIDFERNR  GV S                
Sbjct: 101 RRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNE 160

Query: 121 ------------------------------------LAFFGNKVYDVKHMMRFCD-GLYG 163
                                                AFFG++VYDVKH+MRFC+  LYG
Sbjct: 161 SVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYG 220

[Close]

BLAST of Cla97C02G048450 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 6.1e-34
Identity = 86/229 (37.55%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFI 60
           MDTEFPGV+++P          +Y  LK +VD L LIQ+GLT            T +  I
Sbjct: 39  MDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCI 98

Query: 61  WEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVH-------------------SS 120
           W+FNFR+F++  D++A +SI LL++ GIDF++N   G+                    S 
Sbjct: 99  WQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISW 158

Query: 121 LAFFGN-------------------------------KVYDVKHMMRFCDGLYGGLDRVA 162
           + F G                                 VYD+KH+M FC+GL+GGL+R+A
Sbjct: 159 VTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLA 218

[Close]

BLAST of Cla97C02G048450 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.0e-34
Identity = 83/230 (36.09%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTL-----------RTHQTF 60
           MDTEFPG++ RP          HY  LK++V+ L +IQLGLT              ++  
Sbjct: 39  MDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYC 98

Query: 61  IWEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGVHSS------------------ 120
           IW+FNFR+FD+  D++A DSI LL++ GIDF +N   G+ S                   
Sbjct: 99  IWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVH 158

Query: 121 --------------------------------LAFFGNKVYDVKHMMRFCDGLYGGLDRV 162
                                           ++ +  +VYD+KH+M+FC+ L+GGL+++
Sbjct: 159 WVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKL 218

[Close]

BLAST of Cla97C02G048450 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 87/230 (37.83%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 1   MDTEFPGVLIRP--------SDHYLLLKSDVDALNLIQLGLTLR----------THQTFI 60
           MDTEFPG+++RP          HY  LK++V+ L +IQLGLT            T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVARDLHAPDSIHLLKRQGIDFERNRVHGV---------------------- 120
           W+FNFR+FD+  D+ A DSI LLK+ GID  +N + G+                      
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHW 158

Query: 121 ---HSSLAF-------------------------FGNKVYDVKHMMRFCDGLYGGLDRVA 162
              HS   F                         +   VYD+KH+M+FC+ L+GGL+++A
Sbjct: 159 VTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

The following BLAST results are available for this feature:

BLAST of Cla97C02G048450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901771.1	4.6e-68	62.93	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
XP_022957732.1	1.3e-67	62.17	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 ...	[more]
KAG7035921.1	1.3e-67	62.17	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_023534188.1	1.3e-67	62.17	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022995114.1	1.3e-67	62.17	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]

BLAST of Cla97C02G048450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXM2	5.9e-58	53.65	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9FMS6	5.5e-56	51.69	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LEU4	8.6e-33	37.55	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SKZ2	1.1e-32	36.09	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	1.9e-32	37.83	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Cla97C02G048450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4S7	6.5e-68	62.17	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 S...	[more]
A0A6J1GZY2	6.5e-68	62.17	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3...	[more]
A0A6P3Z4L2	5.4e-62	55.93	Poly(A)-specific ribonuclease OS=Ziziphus jujuba OX=326968 GN=LOC107408817 PE=3 ...	[more]
A0A5D3B887	5.4e-62	59.05	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BNU2	5.4e-62	59.05	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103491668 PE=3 SV=1	[more]

BLAST of Cla97C02G048450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44260.1	4.2e-59	53.65	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G22250.1	3.9e-57	51.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	6.1e-34	37.55	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	8.0e-34	36.09	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.4e-33	37.83	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 85..161 e-value: 2.8E-21 score: 77.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..84 e-value: 9.6E-21 score: 75.9
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 85..163 coord: 1..82
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 85..163 coord: 1..82
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G048450.2	Cla97C02G048450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity