Cla97C02G046305 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G046305
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA polymerase epsilon subunit 3
Location	Cla97Chr02: 34162001 .. 34164486 (-)
RNA-Seq Expression	Cla97C02G046305
Synteny	Cla97C02G046305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGGTATTCCTCCGGGCGTGAGCTATATTCTTTTGCTCACACGTTTAACAGATTGACCAATGATCGTATATTCAAGAAGTTAATATGAGATGTATATAGTTTTTAGAAAAAGCTAACCAGACTAAGTTGAGATCAAACTCTTATGAACAAATGATAGTAAAACGATCAAGAAGTTGAGATCACAGACCTGCATGCACGACTTTCATTGCTTGAGAGAAGTGCCCCTCTAAATCTACATAAATGTAGGATAGCAAACAACCTGCAAAGCTTGAAGACCTCAATGTTAACTTTCTAAGCACTAACAATGTTCTAGCACATCAACTTGGAGCAAGAAAGATGTAATTGACAAACTACACCAACATTTATTCCGCTATAACTAAGTGAAGATACATCCTGAATAGCACTTTATAAAATTTCTTTGGAGGAAGCACCAACAAAACATCTTTGAGAACATAAATTTACACCATAAACATCAACTTCAGGAGTCATGCCTGAGACACTGAACTACGGAAAAGCATCTCCCGTTAAGAAAAATTTTAAATTCATCCACAACTCTTTTAACTTGCAGCACCATTTGAAGGAGAAAATGGCTTAGCATCATTTTGAAAAACAATATGTTGGTAATGCGATGCGTTAAAGTCTCAGATCAGTTAAATAAGATAATGATTATGGTTTATAAGAGAAGAAAATTATCTCCAATGGTATGAGATTTTCTTTATGAAACCAAAAGTAAAGCTACGACAATATCATACTGAAAATATCTAAAAGTTCATTGTCTCTCACTGGATCGACAAATAACTTCTATACACGTCCAGTGTGTTAGAGCTCAATAGCCTTCATAAGTGAAAGATTGCTGAATATTGTCAACCTGCAAAACCCTTAAACTAAATTTAAACATGCCCACCTGATCCAATAGAAATCAAATGCTTTGACACTGATGCAGTAGCAAAATAACGATACGAAAGTAACGTCATTATGAAATATACCCATCTCAATCCCCAGCAAACTGGATACTGAAAGAACACCAATGGTCTATTTTATAACTCTGAACCCAGAATTGCATACTACATACGTTGTAAGACTAGCCAATCAAAAATAAACTTGCAATGGTTACTTTTTGATATTTCTGTAAGAAACCTTTCTTTCATGAGGTAACACGAAAATTTCTTAAGGATACGTTGTTCATACACAAGCTGAGACAGTCATTTGTAATATACTGGTTCAACCATGATTATGTAATATCATGCACCCAGAAGATAGTTCCAAGTTGTCGAAGTTTTCTTGGCTTTTTCAACCATGATTATGTAATTTCATACTTTGCTGTATATCGATAACAAACTTATTAAAGGGTCAACTATTATCCCATTAACTTTATTACATGACAGATCTTTAACTTTCAAGATTGCGATTCTTTAATATAATTTTTTTGAGTTTGAAAATTGAACAATGACGGTTGTTGCTTATTGTAGTAAATTTGTAATATACTGGTTCTTGCAATCAGCAAATACCTTACCTAGTTCTTAGTAGCAAAATTCGTAAGATAACGGTTCTTGAATCCCATAGACAATGAAGAAATTGCTATTTCATCCACAATTATAAACGCTTTAATGCCATAAGTTGTCGATTGATGAATTTAAAAATCGAATTACAGATTCAATTTACGAGTGGGCGCGCAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAAGGTAAATTCATAGATTGACAATGATCCAGTATCTTTTTGCCAGAACAATGGAAAATGACTTGCAAAAACAAAGGTAACTAGAAGAAAAGAGACAACCTATACAACCATTCTTTAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTGTACGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTGGTAATACCCTGAATGTTGTCTCTCAGAACCTTCCGGTGACGCTTTGCTCCTCCCTTTCCCAATCCCTTGCCTCCTTTTCCACGGCCAGACATTTTCTCGATTAATTTGAGGAATGAACACTGAATTGATAGATTGGAATTTTTTGATATAATGCCCCAATCCACTGGTTTGGGGTATTTATGAATGTATGATACAGCACTCCAGATTCTAGTCGGCTTTGGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATTGAGGTTTGA

mRNA sequence

ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACGAGTGGGCGCGCAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTGTACGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTGGTAATACCCTGAATGTTGTCTCTCAGAACCTTCCGATTCTAGTCGGCTTTGGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATTGAGGTTTGA

Coding sequence (CDS)

ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACGAGTGGGCGCGCAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTGTACGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTGGTAATACCCTGAATGTTGTCTCTCAGAACCTTCCGATTCTAGTCGGCTTTGGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATTGAGGTTTGA

Protein sequence

MHRSKHVLKRSKENIVRGPKDKFVHEGRKHRYGFNLRVGAQRKKKKKKKKKEWNKRVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQSTLSVGFYIHRRFTRAIRVKPFRIEV

Homology

[Close]

BLAST of Cla97C02G046305 vs. NCBI nr
Match: KAF1894647.1 (hypothetical protein Lal_00027024 [Lupinus albus])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-18
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 63  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDT 122
           NLT++TI+ PSL  + IN+IH S+RLPPS+ S+ N ITNHIL+ED +NTS  FI+Q+TD+
Sbjct: 6   NLTTKTIEGPSLSLESINNIHSSNRLPPSMFSISNCITNHILQEDFENTSRLFINQTTDS 65

Query: 123 LHTTSTSQTANGRLGNTLNVVSQNL 148
            HT+S+ Q+ N R  ++LNVV+QNL
Sbjct: 66  FHTSSSRQSPNRRFCDSLNVVAQNL 90

[Close]

BLAST of Cla97C02G046305 vs. NCBI nr
Match: KAF3854462.1 (hypothetical protein F7725_022517 [Dissostichus mawsoni])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-18
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 62  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTD 121
           H LTSE +QS +LP QGI+HIHG H L   VL V + IT+HIL+EDLQ+ +G  +DQ+ D
Sbjct: 12  HCLTSEAVQSAALPLQGIHHIHGGHSLSLGVLGVGDGITDHILQEDLQHPTGLLVDQTGD 71

Query: 122 TLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-STLSVGFYIHRRFTRAIRVK 179
           TLH+ + SQTAN   G++L+V+++N  + +G    E  S+ S   +    F R + +K
Sbjct: 72  TLHSATASQTANSGFGDSLDVITENFTVTLGASFAESLSSFSSSTHFRVLFGRWVALK 129

[Close]

BLAST of Cla97C02G046305 vs. NCBI nr
Match: KAF3586617.1 (hypothetical protein F2Q69_00026051 [Brassica cretica])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-18
Identity = 58/144 (40.28%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 33  GFNLRVGAQRKKKKKKKKKEWNKRVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSV 92
           G  L +  + KKK      + ++ +  ++ +LT+ET++S SLP Q INHIH S+ LPP V
Sbjct: 238 GRKLLLVKKPKKKFPNSDPQTSQTLNPISVDLTAETVESASLPLQSINHIHSSNSLPPRV 297

Query: 93  LSVRNSITNHILEEDLQNTSGFFIDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVG 152
           LSV +S+T+ ILE+DL+++SG  +DQ+ +TL  TS S+T NGRLG+TL+V+ ++LP+ +G
Sbjct: 298 LSVCDSVTDDILEKDLEDSSGLLVDQTANTLDATSASKTTNGRLGDTLDVIPKHLPMPLG 357

Query: 153 FGVREQSTLSVGFYIHRRFTRAIR 177
             + +  +     Y   R+   +R
Sbjct: 358 SSLSQSFSSFPXSYSFSRYNWFLR 381

[Close]

BLAST of Cla97C02G046305 vs. NCBI nr
Match: AFK43746.1 (unknown [Lotus japonicus])

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-18
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 56  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFF 115
           R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LSV NSITNHIL++DL+NT+   
Sbjct: 23  RLIENRETLTPKSIECPSLSLESIHHIHGSNSLPPSMLSVGNSITNHILKKDLENTTSLL 82

Query: 116 IDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQST 161
           IDQ+TDTLH T  SQT N  L ++L+VV+++L +  G  + +  T
Sbjct: 83  IDQATDTLHATPASQTPNRWLRDSLDVVAEDLTVPFGSSLAQSFT 127

[Close]

BLAST of Cla97C02G046305 vs. NCBI nr
Match: KAG6540107.1 (hypothetical protein Mapa_018562 [Marchantia paleacea])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 57  VARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFI 116
           +A   H L+SE++QS SL  QG++HIH S  L P VL V + I++H+L++DLQN++  FI
Sbjct: 6   MAAAEHILSSESVQSSSLSLQGVHHIHSSDSLSPRVLGVSHGISDHVLQKDLQNSASLFI 65

Query: 117 DQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVG 153
           +Q  DTLH++S+SQT +G L N LNV+S++LP+ +G
Sbjct: 66  NQPADTLHSSSSSQTPDGGLRNPLNVISEHLPVSLG 101

[Close]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL
Match: A0A6A5PAG4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00027024 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 63  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDT 122
           NLT++TI+ PSL  + IN+IH S+RLPPS+ S+ N ITNHIL+ED +NTS  FI+Q+TD+
Sbjct: 6   NLTTKTIEGPSLSLESINNIHSSNRLPPSMFSISNCITNHILQEDFENTSRLFINQTTDS 65

Query: 123 LHTTSTSQTANGRLGNTLNVVSQNL 148
            HT+S+ Q+ N R  ++LNVV+QNL
Sbjct: 66  FHTSSSRQSPNRRFCDSLNVVAQNL 90

[Close]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL
Match: A0A7J5YY10 (Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_022517 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 62  HNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTD 121
           H LTSE +QS +LP QGI+HIHG H L   VL V + IT+HIL+EDLQ+ +G  +DQ+ D
Sbjct: 12  HCLTSEAVQSAALPLQGIHHIHGGHSLSLGVLGVGDGITDHILQEDLQHPTGLLVDQTGD 71

Query: 122 TLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQ-STLSVGFYIHRRFTRAIRVK 179
           TLH+ + SQTAN   G++L+V+++N  + +G    E  S+ S   +    F R + +K
Sbjct: 72  TLHSATASQTANSGFGDSLDVITENFTVTLGASFAESLSSFSSSTHFRVLFGRWVALK 129

[Close]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL
Match: I3SU04 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 56  RVARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFF 115
           R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LSV NSITNHIL++DL+NT+   
Sbjct: 23  RLIENRETLTPKSIECPSLSLESIHHIHGSNSLPPSMLSVGNSITNHILKKDLENTTSLL 82

Query: 116 IDQSTDTLHTTSTSQTANGRLGNTLNVVSQNLPILVGFGVREQST 161
           IDQ+TDTLH T  SQT N  L ++L+VV+++L +  G  + +  T
Sbjct: 83  IDQATDTLHATPASQTPNRWLRDSLDVVAEDLTVPFGSSLAQSFT 127

[Close]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL
Match: V9IKG5 (Uncharacterized protein OS=Apis cerana OX=7461 GN=ACCB12939 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-18
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 58  ARLNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFID 117
           A + H LT++T++  SL  Q +N+IHGS+ LP  +LSV +SI+++I +E LQ TS FF+D
Sbjct: 12  AAIEHQLTTKTVKGSSLTLQSVNYIHGSYSLPLGMLSVSDSISDNIFQEYLQYTSCFFVD 71

Query: 118 QSTDTLHTTSTSQTANGRLGNTLNVVSQNL 148
           QS +TLHTT+TS+T NG  GNTL+V++QNL
Sbjct: 72  QSRNTLHTTTTSKTTNGWFGNTLDVITQNL 101

[Close]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL
Match: A0A1J3E1Q1 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR14670_c0_g1_i1_g.45534 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 49/85 (57.65%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 65  TSETIQSPSLPFQGINHIHGSHRLPPSVLSVRNSITNHILEEDLQNTSGFFIDQSTDTLH 124
           T+E+I+S +L  Q I++IH SHRLPP VLSV +S+++ ILE+DLQN+S FF+DQ+ D+LH
Sbjct: 74  TAESIESTALSLQRIHNIHCSHRLPPRVLSVSHSVSDDILEKDLQNSSRFFVDQAADSLH 133

Query: 125 TTSTSQTANGRLGNTLNVVSQNLPI 150
            +STS++ N RL ++L+VVSQNLP+
Sbjct: 134 ASSTSKSPNRRLRDSLDVVSQNLPV 158

The following BLAST results are available for this feature:

BLAST of Cla97C02G046305 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1894647.1	3.2e-18	57.65	hypothetical protein Lal_00027024 [Lupinus albus]	[more]
KAF3854462.1	4.1e-18	44.92	hypothetical protein F7725_022517 [Dissostichus mawsoni]	[more]
KAF3586617.1	4.1e-18	40.28	hypothetical protein F2Q69_00026051 [Brassica cretica]	[more]
AFK43746.1	5.4e-18	49.52	unknown [Lotus japonicus]	[more]
KAG6540107.1	1.2e-17	50.00	hypothetical protein Mapa_018562 [Marchantia paleacea]	[more]

BLAST of Cla97C02G046305 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5PAG4	1.5e-18	57.65	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00027024 PE=4 SV=1	[more]
A0A7J5YY10	2.0e-18	44.92	Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_022517 PE=4 SV...	[more]
I3SU04	2.6e-18	49.52	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
V9IKG5	9.9e-18	54.44	Uncharacterized protein OS=Apis cerana OX=7461 GN=ACCB12939 PE=2 SV=1	[more]
A0A1J3E1Q1	1.7e-17	57.65	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR146...	[more]

BLAST of Cla97C02G046305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	PANTHER	PTHR47749	FAMILY NOT NAMED	coord: 57..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G046305.1	Cla97C02G046305.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0005694	chromosome
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding