Cla97C02G041830 (gene) Watermelon (97103) v2.5

Overview
NameCla97C02G041830
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionTMV resistance protein N-like
LocationCla97Chr02: 29699366 .. 29702350 (-)
RNA-Seq ExpressionCla97C02G041830
SyntenyCla97C02G041830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAACATCTTTGCTAATTAGGCTCCTGTTGGTTGTAAAATCCTATAATTTGAAATTTGTACCCTTTCACTCCCTCTGGGTAGCCTATGATCATACATTTGAAAGCCCTTGGGTCTACTTTGCCTTTTTTTCAAGTGAACATAGCCATCTTTCTTTTTCCCAGCAAGTATTAGTCTACCCTGCTTTACTATTTTCAAGTACCCCTTTCCAGCTTGAATGGGGTGCCTAGGTTATCAAGCATACCTAAAGAGATCATTTCTCTCTTTAGCTTTGGAACGTGTCTTACTCCTCTAAGAAGTGCCTCCCTATTATCTGATAGGTTCAATATGACTGAGCCTATGCCAATAATCTCACATTCATGATTATTAGCCATGTATTCAACATGTCCATAGTTTCTTCCATGTTTATTAGTAGTTGTTAGTACCTCAGTGTGTTCATAAGCCTCATCTCCAACAGGTCCATAGTCTCTTCCATGTTGCCTCATCCAACTTGAATCATATCTTCTATATTATCTGTTTATGTTGGTGTCTTCTTTACCATAGGACCTGAATCTTCTATTCTCTTCCTTTTTATCGGATTTTCCCCCCCGGACAATTTCTTTGTAATTTCCTTCTTTATGGCATATAAAGCATTTCAATACTGACCTGTCTTTATTCATTCATTGGCCCTTATTGTATTGATTCCTCTTGGAGTAATTTTTCCCTTCACAAAAGAAAGATTCAGCCCCACCAACATTCTTGTTCTCTGTTTTTAGTTCTGTTTTCTCTTCAATCATTTGTCTAAGTAGATTGTCAGTTATATTGAGCATGAGTGACCATTAACCAAATTCTTCCATATTTTTTTCTCCGGCACTCATACTTGCAGGAAGTTTCTTGGGGTCTTTTAGTGCCTTCAAAGCTGTCTGAGAACTCAAAATGGTTGTAATTCCTTTTGCCTAGAGGGTGAAATATCCCCCTCTGCTAAACTTCTCAATTTCAAACTTTGTGGAAGTTGTTGCGTTGAAACTAGGTTACGCATGATGCGTTGTATTGGCCTTATGCCGCGTTGAAGTTAGCTAAGATTGATTCATTTAAACGCAAGTTTTCCTATTAAAAACCCAAGTGTAAGTTTACAATAGGTTTCCTAGAGAGTCCCGGGTTGAACACAAGATTTGTAACAATCTGATGTTAAGAAAGTTCTCTTATTTAATGTGGTTTGCTGTACAAATGAATATGTGTAAAAATAATGTGTTGAGGTGTCTTTACAATAACTAAAATAAATTTACGAAGTATAAAAATGGTGGATGAACGTATGTGATCATGATGCTGGGAGGAAATGGTTGAAAGTGTCAAGTACAAATATAATCAAAACCACATGCATTGGAATGGAGAAGTCAATGGAAAAAGTAGCGTTGAGACGACTTCACTAGCATATTTCTAAGTACTATTTAAGTTGGCGTTCATGTTGCAAACTCGAAATTGAGAACGCATCTCTCGATGTTTCGACGCCACATTTATCAGGTTTTTAAGACGCATAATGAGCTCTTACAAAAGCCCAACTTTATCTCTAAAACTAATTCTTTTCTGGTTTAAATGAAAATAGTAAATCACTTACTCTCTCAAGTAGTTGATCAAATTTAATTAAACCTATTTGTTCGATATATTCATGCAATATTACATGAATCTTATCTCAAGACTCTAATACCAATTATTGGAAAACAATGTTTAATGTGTTGTCACTATTGGAACGTGCTTCCTTCCACCTTTCACCACGAATTCCACATTTACTGCTTTGTAGATCAAATCGGCTCTCAAAAACCACATGCAAATTGAGAAAAGAAATGGGAATCGATTACTTAATGTTAGTGTTTGATTTCTTCAAGTGGATTGATAGCACTTGAAATGTGCTATTTTCCTCAACTTAGCTCGGGATCGTTGTACTATTTAATGTGTTAAAAATGTTATTTTGTAGGTAACAAGCTCCTAAAGAGTAGAATCGAACGTTAGGAAGAAAATAGAGCTAAAATGGACCAATATGGAGTCCTAATGAAGCAATTAGATCAAATGAAAGCTAAAAAGACCAAAACGTCCCTGAAGAACCTTGTCGTTGTGCTAAAACTAGTAGGTAACTGATTTTGACAACACCGCGGCACTATCACGGGGAAACAAAGACTACATTTCGATAATTAGGTCATATCTTTTGATCCGGGTGGCTGTTTTGAGCGAATGACCACTCATTTTTTTCATCCTCTATCCATCTACAACATTAGATTTTAGAGTTCTTTCCATCTTCTCTCTATAATCAAGTTAAATGGTGACGAGTTTTGATGATATTGCCTCGGCGGATTGTTAAGGTTCGTTTTCTAGCTTAGGAGTAGGGAAAAACCCATTTGTGTTGATTGTGAGATTTTGTTCTTCATCAAACTCATTTATATTTCTTGTTTTTTTTGGGTTTCTTTCTGATTTAATAGATTAACAATCAAATTATCTTGGATTGTCTGACAAACGGTTGTTGATTGTATGATTGGATGCTTTTGATTAGCGTTGTATGATTATGTTATTTTTAATAACCACACTGCACAATTTTAATCTTAGAAGATTGGTTCTCTCTTAAGATGCAATTTAACTAAGTTTATCATCTTTTATTTGGCTATGATTATGTACTTAGCAACCGGAAGGAGGTTGATATTATTCGAGATCTTGTTAAAGAAGTGTCGTCTAAGTATGGAGTGGGAATTGATTCTCAACTAGAAACATCATCTTTATACGAGAAGGAGAACAAATTCCATTATAGGACACAACATGAGTATGAGTCTGATATTACTTTGGCCAAATTAAGCTTAATTGCGAATCAATTGGGAAGGTTGTTGCTTAATGTTAGAGAAGCTTCAAAGCAATTGGATGGCCTTGTTCAACTACAGGAAAAACCACTCTATGAGATGTTAAAGGATGATTTGAAGGTTGTCAATCTTGACACGGAAATTAAGATCGTAAAGGAATAG

mRNA sequence

ATGAAAACAACATCTTTGCTAATTAGGCTCCTGTTGGTTGTAAAATCCTATAATTTGAAATTTGTACCCTTTCACTCCCTCTGGGTAGCCTATGATCATACATTTGAAAGCCCTTGGGTCTACTTTGCCTTTTTTTCAAGTGAACATAGCCATCTTTCTTTTTCCCAGCAAAAAGATTCAGCCCCACCAACATTCTTGTTCTCTGTTTTTAGTTCTGTTTTCTCTTCAATCATTTGTCTAAGTAGATTCAACCGGAAGGAGGTTGATATTATTCGAGATCTTGTTAAAGAAGTGTCGTCTAAGTATGGAGTGGGAATTGATTCTCAACTAGAAACATCATCTTTATACGAGAAGGAGAACAAATTCCATTATAGGACACAACATGAGTATGAGTCTGATATTACTTTGGCCAAATTAAGCTTAATTGCGAATCAATTGGGAAGGTTGTTGCTTAATGTTAGAGAAGCTTCAAAGCAATTGGATGGCCTTGTTCAACTACAGGAAAAACCACTCTATGAGATGTTAAAGGATGATTTGAAGGTTGTCAATCTTGACACGGAAATTAAGATCGTAAAGGAATAG

Coding sequence (CDS)

ATGAAAACAACATCTTTGCTAATTAGGCTCCTGTTGGTTGTAAAATCCTATAATTTGAAATTTGTACCCTTTCACTCCCTCTGGGTAGCCTATGATCATACATTTGAAAGCCCTTGGGTCTACTTTGCCTTTTTTTCAAGTGAACATAGCCATCTTTCTTTTTCCCAGCAAAAAGATTCAGCCCCACCAACATTCTTGTTCTCTGTTTTTAGTTCTGTTTTCTCTTCAATCATTTGTCTAAGTAGATTCAACCGGAAGGAGGTTGATATTATTCGAGATCTTGTTAAAGAAGTGTCGTCTAAGTATGGAGTGGGAATTGATTCTCAACTAGAAACATCATCTTTATACGAGAAGGAGAACAAATTCCATTATAGGACACAACATGAGTATGAGTCTGATATTACTTTGGCCAAATTAAGCTTAATTGCGAATCAATTGGGAAGGTTGTTGCTTAATGTTAGAGAAGCTTCAAAGCAATTGGATGGCCTTGTTCAACTACAGGAAAAACCACTCTATGAGATGTTAAAGGATGATTTGAAGGTTGTCAATCTTGACACGGAAATTAAGATCGTAAAGGAATAG

Protein sequence

MKTTSLLIRLLLVVKSYNLKFVPFHSLWVAYDHTFESPWVYFAFFSSEHSHLSFSQQKDSAPPTFLFSVFSSVFSSIICLSRFNRKEVDIIRDLVKEVSSKYGVGIDSQLETSSLYEKENKFHYRTQHEYESDITLAKLSLIANQLGRLLLNVREASKQLDGLVQLQEKPLYEMLKDDLKVVNLDTEIKIVKE
Homology
[Close]
BLAST of Cla97C02G041830 vs. NCBI nr
Match: XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-18
Identity = 73/145 (50.34%), Postives = 87/145 (60.00%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+IRD+VKEV S            KY VGIDS+LE     +   +EK NKFHY+TQ
Sbjct: 159 RKEADLIRDIVKEVLSILNHTCTPLNVAKYPVGIDSKLEYMKFCSRYFFEKGNKFHYQTQ 218

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           H+YESD                 TLAK   + IA+Q      L NVREASKQ +GLVQLQ
Sbjct: 219 HKYESDTGVYMMGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLVQLQ 278

[Close]
BLAST of Cla97C02G041830 vs. NCBI nr
Match: ADU33178.1 (putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-17
Identity = 73/145 (50.34%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + SL+EK NKFHYR Q
Sbjct: 160 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHSLFEKSNKFHYRKQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

[Close]
BLAST of Cla97C02G041830 vs. NCBI nr
Match: KAE8651600.1 (hypothetical protein Csa_023480 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-17
Identity = 73/145 (50.34%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + SL+EK NKFHYR Q
Sbjct: 350 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHSLFEKSNKFHYRKQ 409

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 410 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 469

[Close]
BLAST of Cla97C02G041830 vs. NCBI nr
Match: ADI99934.1 (TIR-NBS-LRR-AAA+ATPase class resistance protein [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + +L+EK NKFHYR Q
Sbjct: 190 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHNLFEKSNKFHYRKQ 249

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 250 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEACCFLSNVREASKQFNGLAQLQ 309

[Close]
BLAST of Cla97C02G041830 vs. NCBI nr
Match: TYK18304.1 (TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I D+VK+V S            KY VGIDS+LE     + +L+EK NKFHYRTQ
Sbjct: 160 RKEADLIGDIVKKVLSTLNRTCMPLYVAKYPVGIDSKLEYIKLRSHNLFEKNNKFHYRTQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYE D                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYEFDTGIYMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

[Close]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match: A0A0A0LJM0 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 73/145 (50.34%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + SL+EK NKFHYR Q
Sbjct: 160 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHSLFEKSNKFHYRKQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

[Close]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match: E7CHD3 (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 73/145 (50.34%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + SL+EK NKFHYR Q
Sbjct: 160 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHSLFEKSNKFHYRKQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

[Close]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match: D9I8I4 (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-17
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I DLVK+V S            KY VGIDS+LE     + +L+EK NKFHYR Q
Sbjct: 190 RKEADLIGDLVKKVLSVLNRTCTPLYVAKYPVGIDSKLEYMKLRSHNLFEKSNKFHYRKQ 249

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYESD                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 250 HEYESDTGVYMVGLYGIGGIGKTTLAKALYNKIASQFEACCFLSNVREASKQFNGLAQLQ 309

[Close]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match: A0A5D3D443 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00110 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.8e-17
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I D+VK+V S            KY VGIDS+LE     + +L+EK NKFHYRTQ
Sbjct: 160 RKEADLIGDIVKKVLSTLNRTCMPLYVAKYPVGIDSKLEYIKLRSHNLFEKNNKFHYRTQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYE D                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYEFDTGIYMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

[Close]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match: A0A5A7TWK7 (TIR-NBS-LRR disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00340 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.8e-17
Identity = 71/145 (48.97%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 85  RKEVDIIRDLVKEVSS------------KYGVGIDSQLE-----TSSLYEKENKFHYRTQ 144
           RKE D+I D+VK+V S            KY VGIDS+LE     + +L+EK NKFHYRTQ
Sbjct: 160 RKEADLIGDIVKKVLSTLNRTCMPLYVAKYPVGIDSKLEYIKLRSHNLFEKNNKFHYRTQ 219

Query: 145 HEYESD----------------ITLAK--LSLIANQLGR--LLLNVREASKQLDGLVQLQ 193
           HEYE D                 TLAK   + IA+Q      L NVREASKQ +GL QLQ
Sbjct: 220 HEYEFDTGIYMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ 279

The following BLAST results are available for this feature:
BLAST of Cla97C02G041830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877835.14.3e-1850.34LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
ADU33178.16.3e-1750.34putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus][more]
KAE8651600.16.3e-1750.34hypothetical protein Csa_023480 [Cucumis sativus][more]
ADI99934.11.4e-1648.97TIR-NBS-LRR-AAA+ATPase class resistance protein [Cucumis sativus][more]
TYK18304.11.8e-1648.97TMV resistance protein N-like [Cucumis melo var. makuwa][more]
BLAST of Cla97C02G041830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJM03.0e-1750.34TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022270 PE=4 SV... [more]
E7CHD33.0e-1750.34Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
D9I8I46.8e-1748.97TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus OX=3659 PE=4 ... [more]
A0A5D3D4438.8e-1748.97TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7TWK78.8e-1748.97TIR-NBS-LRR disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
BLAST of Cla97C02G041830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G041830.2Cla97C02G041830.2mRNA